Xiphophorus couchianus (Monterrey platyfish): 114144501
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Entry
114144501 CDS
T05908
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
114144501 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xco03021
]
114144501 (smarca5)
03036 Chromosome and associated proteins [BR:
xco03036
]
114144501 (smarca5)
Transcription machinery [BR:
xco03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
114144501 (smarca5)
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
114144501 (smarca5)
RSF complex
114144501 (smarca5)
WICH complex
114144501 (smarca5)
B-WICH complex
114144501 (smarca5)
NORC complex
114144501 (smarca5)
BRF complex
114144501 (smarca5)
NuRF complex (fruit fly)
114144501 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
DBINO
Myb_DNA-binding
AAA_14
Motif
Other DBs
NCBI-GeneID:
114144501
NCBI-ProteinID:
XP_027873202
LinkDB
All DBs
Position
5:4862851..4873909
Genome browser
AA seq
1035 aa
AA seq
DB search
MSESENCVEQREEPTELEEAGGAEEKSDSSDAGKESSSEGGADAQDASSSSSSKTKESTP
GYEEKVQTDRTNRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSA
GDNRHRRTEQEEDEELLNESTKTTNVCTRFDESPSYVKTGKMRDYQVRGLNWLISLYENG
INGILADEMGLGKTLQTIALLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRAV
CLIGDRDQRTALIRDVLLPGEWDVCVTSYEMLIIEKAVFKKFNWRYLVIDEAHRIKNEKS
KLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDQ
KLVERLHTVLRPFLLRRIKADVEKTLLPKKEIKIYVGLSKMQREWYTKILMKDIDILNSA
GKMDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNGGKMVVLDKLLPKMKEQ
GSRVLIFSQMTRMLDILEDYCMWKNYEYCRLDGQTPHEERQVSINAYNEPNSTKFIFMLS
TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQQKQVRVYRFITENTVEERIV
ERAEMKLRLDSIVIQQGRLVDPSANKLGKDEMLSIIRHGATHVFASKESEITDDDIDAIL
ERGERKTMEMKEKLSSLGESTLRNFTMDTENTSVYTFEGEDYREKKKVITNWIEPPKRER
KANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGY
KVPRNPDIPNSAQVQKEEQAKIDEAEALTEEELEEKENLLQQGFTIWSKRDFNQFIKANE
KWGRDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIK
KALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCIR
NSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPKSSSAQKRKA
EGTPDGRGRRKKLKL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaagcgaaaactgcgttgaacagcgggaagaaccaactgaacttgaagaagcc
ggaggagcggaggaaaaatcagactcttcagatgctggaaaagaatcctcatcagaaggt
ggtgctgatgcacaagatgcatcctcctcttcatcatctaagactaaagaatccactcca
ggttatgaggagaaagtgcaaactgaccgaaccaacagatttgaatatctgttaaagcaa
acggagctgtttgcacatttcatccaaccagctgcacagaagaccccaacttcccccctg
aagatgaagccgggccgtcctcggatcaaaaaagacgagaagcagaacctgctctctgct
ggagacaaccggcaccgccgcaccgagcaagaggaggacgaagagcttctcaacgagagc
acaaagaccaccaatgtgtgcactcgctttgatgagtctccctcctatgtgaaaacagga
aaaatgagggactaccaggtccgtggtctgaactggctcatttctctgtatgaaaatgga
atcaacggcatcctggcagatgagatgggactggggaagaccctccagaccatcgccctg
ctgggttacatgaagcactacagaaacattccaggtcctcacatggtgctggtccccaag
tccactctgtacaactggatgaacgagttcaagcgatgggtgccctctctgcgcgccgtc
tgcctgatcggagaccgggatcagcgtaccgccctgatcagagacgttctgctgccagga
gagtgggacgtctgcgtcacgtcttacgaaatgctcatcattgaaaaggccgtgtttaag
aagttcaactggaggtacctggtcatcgacgaagctcacaggatcaagaacgagaagtca
aagctgtcagaaattgtgcgtgaatttaaaaccaccaaccggctcctcctgactggaacg
ccgcttcagaacaacctgcatgagctctgggctctgctcaacttcctgttgcctgatgtc
ttcaactcatcagaggatttcgactcatggtttgacacaaacaactgcttgggcgaccag
aagctggttgaacgtcttcacaccgtgctgcgtcctttcttgcttcgtcgtatcaaagca
gacgtcgagaaaactttgcttcccaaaaaagagatcaagatttacgtgggtctgagtaaa
atgcagcgagagtggtacacaaagattctcatgaaggacatcgacatcctgaactctgca
ggcaaaatggacaaaatgcgtctgctgaacgtcctcatgcagctcaggaaatgctgcaac
catccgtacctgtttgacggggcggaacccggcccgccctacaccaccgacctccacctg
gtggtgaacggcggcaaaatggtggtgctggacaagctgttgcccaaaatgaaggagcag
ggctcccgtgtgctcatcttcagtcagatgaccaggatgctggacatcttggaggactac
tgcatgtggaagaactatgagtattgccgtctggacggacaaactccacacgaagaaaga
caggtctccatcaacgcatacaacgagccaaacagcacaaagttcatcttcatgttgagc
accagggccggcggtctgggcatcaacctggctacagccgacgtagtcattctctacgac
tcggactggaacccccaagtcgacctgcaggcgatggatcgagctcacagaatcggtcag
cagaagcaggtgcgtgtttaccgtttcatcacagaaaacactgtggaggagagaatcgtg
gagagggctgagatgaagctgcgcctggactctatcgtcatccagcagggaagacttgtg
gatccaagtgcgaacaagctgggtaaagacgagatgttgtccatcatccggcacggtgcc
acacacgtgtttgcttccaaagagagcgagatcacagacgatgacattgatgcgatcctg
gagcgcggagaaagaaagaccatggagatgaaagagaagctgtcatctctgggtgaaagc
acactgaggaacttcaccatggacaccgagaacaccagtgtgtacacatttgaaggagag
gactacagagagaagaaaaaggttatcaccaactggattgagcctcccaaaagagaacgg
aaagccaattacgccgtagatgcgtacttcagggaagctctgcgagtcagtgagcccaaa
gcacccaaggctcctcgtccgccgaagcagccaaacgttcaggacttccagttcttccct
ccacgtctgtttgagcttctggagaaggagatcctgttctacagaaagaccatcggatac
aaggttccacgtaatcccgatatccccaactcggcccaggtccaaaaagaagagcaggcc
aagatcgatgaggccgaagctctgactgaggaggagctggaggagaaagagaatctactg
cagcagggattcacaatttggagtaaacgtgacttcaaccagttcattaaagctaacgag
aaatggggaagagacgatatcgagaacattgccagagaagtcgaggggaaaacacctgaa
gaagttatggaatattctgccgttttctgggagcgctgcaacgagttgcaggatatcgaa
aagatcatggcccagatcgagagaggagaagccagaattcagagaagaatcagcattaaa
aaagctctggactcgaagatcggacgctacaaggctcccttccatcagctccgcatctcc
tacggcaccaacaagggcaagaactacacggaggaggaagaccgcttcctcatctgcatg
ctgcacaagctgggcttcgacaaggagagcgtctacgacgagctccgccagtgcatccgc
aactcgccccagttccgcttcgattggttcctcaagtccaggacagccatggagctgcag
aggcgatgcaacactctgatcacactgatagagagagagaacatggagctggaggagaga
gagaaggctgagaaaaagaagaggggaccaaagagcagctcagcgcagaaacgtaaagca
gagggaacccccgacggccgaggacgcaggaagaagctcaagttgtga
DBGET
integrated database retrieval system
