Xiphophorus couchianus (Monterrey platyfish): 114144505
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Entry
114144505 CDS
T05908
Symbol
helz
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114144505 (helz)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
114144505 (helz)
3'-5' decay
Other 3'-5' decay factors
114144505 (helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_19
AAA_30
UvrD-helicase
ResIII
PAM2
zf_CCCH_4
AAA_22
PhoH
Mov-10_helical
AAA_16
zf-CCCH_4
AAA_7
AAA_5
Motif
Other DBs
NCBI-GeneID:
114144505
NCBI-ProteinID:
XP_027873209
LinkDB
All DBs
Position
5:33248800..33311779
Genome browser
AA seq
2012 aa
AA seq
DB search
MADRRAEKSCEEASKSLARREYEAAVTHSTDALVVLAPQASSPGAPVLPSPPSAVAAGPL
RSRALLYRIAAFLQLKNYDGADEDCKHVLADEVARGDGSLQASLRSMLLDGSLQEVVSIL
SKAQVVKVEVQNGIVTKDLTRLKMLFSEIEATKREMAPEYTDDQDEEVQDGWQFRPPPRG
VTSSEEYTLCKRYLEQGLCRYGAQCTSAHSQEELMEWQKRYASRLIRLKQQQESKHFTEN
YMETLIEKWMNSLSPEKVLSDSLEGVTVETSSGLSVTVTSKKSSNSWIFSLLCKPARKLF
RIALLYDAHRPHFFITGVSAGDRLQSVPKGCQEWTPGDDSAAAANNGLDHCVYKVAVGFS
TEIFGTFRQTIVFDFGSEPVLMQRIMVDAASIEDLEHLLAARQQLLITAKRWDSSCKTIV
EFTPNETVADLERSLLARYQIPLSADQLFTQSVLDKTLTKDNYQARLHDLLYIEEIAQYK
EVSKFNIKANLQLVTSFMLTGISVGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNS
VLLLPLGREGFGGHAPSGVKERVYEAVIEEKTKDYIFLRICKSCCEELMLQPDREIQVEL
QFQLNRQPLCEMHYALDRIKDNTILFPDVGLVPTIPWSPNRQWDEQLDPRLNAKQKEAIL
AITTPISISLPPVLIIGPYGTGKTFTLAQAVKHILRQDTSRVLICTHSNSAADLYIKDYL
HPYVEAGNEHARPLRVYFRNRWVKTVHPVVQQYCLISSTQVTFQMPTREDILRHRVVVVT
LSTSQYLCQLDLEPGLFSHILLDEAAQAMECETIMPFPLASKTTRIVLAGDHMQLSPFVY
SEFARERNLHVSLLDRLYEHYPPEFPCRILLCENYRSHEAIINYTSELFYDGKLIASGKQ
PCHKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEELRKKWPVAWGKLDEGSIG
VVSPYADQVFRIRAELRKKRMHEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKR
KEQLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEHFISIC
HENSSLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRPLQGHQSSSQGLHPHHHP
HPQHGLPASNKQAAQHHQQQQQQQSPPKGKQSNHTEHLPPDGYVQSSPAVLMGNPIRAFT
PPLGATPAGIGKSPSPVQRIDPHTGASILYVPAMYGGNVVMPMPLSLPWPGYQNRFAVDP
RIMSHPAAMAYNLNLLQPQNRGSPIPYSGVAHPSPLGLAQLSPEKDLQADLIRNGKVDGC
TKAEQTRLQTPERKNADIREKQGDLDTGQSRSLDSQPEGLVGFPNALLHRKDPSATQRSL
NYHLAPPSPAFPPHPASGRTFPQQYPVPRLPYRVGQPQHPGMPQQNQQQQLSPAFTGGSH
ASFFSGSMAAHRSVQSPTVDGAESSGEEMSGTIRTHMGHQGAQHPGLPQHSRVSNFGEDG
QDGSLVDGLDLQSPLTLEALSQQQQQAARLGQWGEAAGPFLQGSVAFPLPQQLAHLAQSG
MARFPPQLLRAATWGLSANMDDEAVSSATAGPTCSRYPGLLREMPPQEQPEPREATELQP
PPQSRLLQYRQSQTRASGEPSSSLAPLSNHAGPFPAGLYSHETGRNLLNENLLNNPALQQ
QQHPGNPLYNAGSYPNQPPAQSGGSSPPPSNVKYLLQEAQWSHGGAASVSQQNHLLGNQS
HSLLYGLPLMAHPSRPEQVLMQLQQQQQQQQQQHHQQQQQQNQGPDSESYHPLSPRTSAA
AALHSIDEYEPRGPGRPLYQRRISSSYPDESSPAHPCHPEPQDHPQQPHGSYTYPPHDHL
WPSNGGGPGPFQNIPCNGASKLVQHRELLASKVHRQTDEQVKAEPAGAQQQAHPHNLNSL
QHQFPPLMPNKKQQQPPPPPPPPPQPPTEPTQGAPSLVKPPTMSYASALRAPPKPRAVRP
EQVKKNSDPLSLLQELSIGSSNGSNGYYSYFK
NT seq
6039 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaggagagcggagaagtcatgtgaagaagccagcaaatcgttagcaaggcgg
gagtacgaggcggcggtcacccacagcacggacgccctggtggtcctcgcgccccaagcc
tcgtcgcccggcgcccccgtactgcccagccctccctcggcggtcgccgccggacccctc
cgcagccgcgccctgctctaccgaattgctgccttcctacagctgaaaaactacgacgga
gcagatgaagactgcaaacatgtattggcagatgaggttgcccggggtgacggctctcta
caggctagtttgcgctccatgcttttggatggcagcctgcaagaggtggtcagcatccta
tctaaagcccaagttgtaaaggtggaggtccagaatggcatcgttacaaaagacctgacc
agattaaaaatgctcttctccgaaattgaggcaacaaaaagagagatggcccctgaatac
acagatgaccaggatgaagaagtccaagatggctggcagttccggcctcctcccagaggg
gtcactagcagcgaggagtacacactctgcaaaaggtacttggagcaaggcctgtgtcgg
tacggggcacagtgtacgtcggcccactcgcaagaggagctgatggagtggcagaaacgt
tacgcctcccgactcattcgcctcaaacagcagcaggaaagcaaacacttcactgagaac
tacatggaaactctaatcgaaaagtggatgaactccctttccccggagaaagtgttaagt
gatagtctagaaggcgtgacagttgagaccagctccggcctttctgttacagtcacctcg
aaaaaatcctccaactcctggatcttttccttgttgtgcaagccggccagaaagctgttc
cgcattgccttgctctacgacgcccatcgaccacacttcttcatcaccggcgtgtcagcc
ggggatcgcctgcagtcggttcccaaaggatgccaagagtggacgcccggagacgattca
gcggcagcggccaacaacggcctcgaccactgcgtctacaaagtggcggtgggcttcagc
accgagatctttggcaccttcagacagaccatcgtgttcgacttcggctccgagccggtg
ctgatgcagaggatcatggtggacgccgcctcgatcgaagacttggagcacctgctggca
gccaggcagcagctgctgataaccgccaagcgctgggactcgtcctgtaaaaccatcgtg
gaattcacgcccaacgagacggtggccgacctggagaggagcctgctggcccgctaccag
atccctctgtcggccgaccagctcttcacccagtccgtcctggacaagacgctgaccaaa
gacaactaccaggcccggctgcacgacctgctctacatagaggagattgctcagtacaag
gaagtcagcaagtttaacatcaaggccaacctccagctggtaaccagcttcatgctaact
gggatttctgttggagccaagtacgctcagaacggacagctctttgcacgcttcaaactt
actgaaacactttccgaggacactctggctgggagactagtaatgaccaaggtgaattca
gttctgctgctgccgttggggagggaagggttcggcggtcacgctccttctggggtcaaa
gagcgcgtttatgaggctgtgatagaggagaagaccaaggattacatcttcctgaggatt
tgcaagagctgctgcgaggagctgatgctgcagcctgacagagaaatacaggtggagctc
cagtttcagctcaacagacagccactgtgtgagatgcactacgccctggatcgcatcaaa
gacaacaccatccttttccctgatgttggccttgtgcccacaatcccctggagcccaaac
aggcagtgggacgaacagctggacccccgtctgaatgccaagcagaaagaggccatcctg
gccattaccacacccatctccatctctcttcccccagtcctcatcattgggccctatggt
accggcaagaccttcaccctggcacaggctgtcaaacacattcttcgccaggacaccagc
agggtcctgatctgcactcattccaacagcgcagctgacctttacattaaagactatctt
catccatatgtcgaagcaggcaacgagcacgccagacctctcagggtatatttcaggaac
cgctgggtgaagaccgtccacccggtggtccagcagtactgtctcatctccagcacacag
gtcactttccagatgccgacaagggaggacatcctcaggcaccgtgttgtcgtggtcacc
ctcagcacctcccagtacctctgccagctggatttggagcctgggttgttctcccacatc
ctgttggatgaagcagctcaggccatggagtgtgaaaccatcatgccttttcctcttgct
agcaagaccacccgcatcgtgctggctggggaccatatgcagctcagtccgtttgtgtac
agcgagtttgcacgggagcgcaacctgcacgtgtcactgctggaccggctgtatgagcac
tacccccccgaatttccctgtcgcatcctcctgtgcgagaactaccgctcccacgaagct
atcataaactacacatccgagttattttacgacgggaagctcattgcgagtgggaagcag
ccgtgccataaggatttctacccgctgaccttcttcacagccagaggagaagatgtccag
gagaagaatagcactgcctactacaacaatgcagaggtgtttgagattgtggagcgggtg
gaggagctgcgtaagaagtggccggtggcctgggggaagctggacgagggcagcatcggg
gtggtgtcgccgtacgccgaccaggtcttccgcattcgtgccgaactccgaaagaagaga
atgcacgaggtcagcgtcgaaagagtgcttaacgtccaaggtaaacagttccgggtgctg
ttcctcagcacggtgcggacgcggcatacctgcaagcacaagcagaccgccatcaaacgc
aaagagcagctggtggaggattcgaccgaggacctcgactacggtttcctgtcaaactac
aagctgctcaacacggccatcaccagagctcagtccctggtcgccgtggtgggagacccc
atagcgctctgctctgttggacgctgcagaaaattctgggagcattttatctcaatctgc
cacgagaactccagcctgcacggcatcaccttcgagcagatcaaggctcagctggaggcc
ctggagctcaagaagacgtacgtcctcaaccccctggccccggagttcatccctcgggcc
ctcaggccccttcagggacaccagtcttcctcccagggccttcatccccaccatcatcct
catcctcagcacggtctgcctgcctccaacaagcaggccgcgcagcatcaccaacaacag
cagcagcagcagtcccctccaaaggggaaacagtcgaaccacacagagcacctcccaccc
gatggatatgtgcagtccagccctgctgtgttgatgggaaaccccatccgggccttcacg
ccccctctgggtgccacgccggccggcataggaaagtcgcccagccccgtgcagcgcatc
gaccctcacaccggagccagcatcctctacgtaccagctatgtacggaggaaacgtggtc
atgcccatgcctctgtcgttgccctggccaggttaccagaaccgctttgctgtggaccct
cgcatcatgagccacccggcggccatggcctacaacttaaacctgcttcagccgcagaac
cgaggctctcccatcccttatagcggcgtcgcccacccctctcctttaggactggcccag
ctcagcccagagaaggacctgcaggccgacctcatcaggaacggtaaagtagacggctgc
acaaaggccgaacagacccgtcttcagacgccagagaggaaaaacgcagacataagggaa
aaacagggagatttagacaccggtcaaagtcgaagtttagattcccaaccagagggtctg
gttggctttccgaacgctctgcttcaccgaaaagacccttcagctacccaaagatccctc
aactaccacctggcaccgcccagcccagcttttcctccacaccccgccagcggaagaacc
ttcccccagcagtaccccgttcctagacttccctaccgggtcggccagcctcaacatcca
gggatgccccaacagaatcagcagcaacagctcagtcctgccttcactggtggaagccac
gcttccttcttcagcggttccatggccgctcaccgatccgtgcaatcgcccaccgtggac
ggggcggagtcttcgggggaggagatgagtggcaccattaggactcacatgggccaccag
ggggcacaacacccaggcctaccacagcacagcagggtcagcaactttggggaggatgga
caggatggaagtctggtggacggtttagacctccagagtcccctgactttagaagccctg
agccagcagcagcagcaggcggccagactgggccagtggggggaagcagcaggccccttc
ctccagggcagtgttgcctttcctctgccccagcagctcgcccacctcgctcaatctggc
atggctcgctttccccctcagctgctccgggctgctacctgggggcttagtgccaatatg
gacgacgaagccgtttcctctgccaccgcgggtccaacatgctccaggtacccgggcctt
ttgagagaaatgcccccccaggaacagccggaaccacgggaagcgaccgaattgcagccg
ccgcctcagtcccgcctgctccagtatcgacagtcccagacccgtgcctccggcgagccc
tcgtcctccttagcccccctgtccaatcacgctggccccttccccgcaggactgtactcc
cacgaaaccggccggaacctcctcaacgaaaaccttctcaacaacccggctctgcagcag
cagcagcacccagggaaccccctgtacaatgccggtagctacccgaatcagccgccagcg
cagtccggcggcagcagccccccaccatcgaacgtgaagtatctcctgcaggaagcgcag
tggtcccacggcggagcggcgtccgtgtcccagcagaaccacctcctagggaaccagagc
catagccttctgtacggactgcccctgatggctcaccccagcaggccggagcaggtgctg
atgcaactccagcagcagcagcagcagcagcagcagcaacaccatcaacagcaacagcaa
caaaatcaaggcccggactccgagtcctaccaccctctgtcccctagaacatcagcagcc
gctgccctccacagcatagacgagtatgaaccgagaggtccgggccggcccctctatcag
cgccgcatctcctccagctacccggatgaatcatctccagcccacccctgtcatcccgag
ccccaggatcacccacagcaaccgcacggctcctacacctaccccccccacgaccacctc
tggcccagcaacggcgggggtcccggtccattccagaacattccatgcaatggagctagc
aaactagttcagcatcgtgagcttctagcttcaaaggtccaccgtcagacggacgagcag
gtgaaggcggaaccggccggcgcgcagcagcaggcgcatccacacaacctcaactccctt
cagcaccagtttccccctctaatgcccaataagaagcagcagcagccgccaccgccgccc
ccgccgccaccacagcctccgacggagcccacccagggggctcccagtttagtaaagccg
cccaccatgtcgtacgcgagcgccctccgagcgcctcccaaaccgagagccgttcgaccc
gagcaggtgaagaagaacagcgacccgctgtccctcctccaggagctgagcatcggaagc
tcaaacggtagcaatggttattattcttactttaaatga
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