Xiphophorus couchianus (Monterrey platyfish): 114144545
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Entry
114144545 CDS
T05908
Name
(RefSeq) LIM and calponin homology domains-containing protein 1-like isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
xco04990
]
114144545
Domain-containing proteins not elsewhere classified [BR:
xco04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
114144545
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
114144545
NCBI-ProteinID:
XP_027873285
LinkDB
All DBs
Position
5:complement(37480009..37513555)
Genome browser
AA seq
1659 aa
AA seq
DB search
MAGPEPSHPEPACLEAQKWIEAVTGKSFGDKDFRSALENGILLCELLSAIKPGLVKKINR
LPTPIAGLDNLSVFLRGCEELGLKGSQLFDPGDLQDTSIRANLKDSDCNRKLKNVLNTVF
WLGKAASGCPSYSGPNLNLKEFEGLLAQMKLESDDGGDSSQKRSVRDSGYDCWDSERSES
LSPPQHTRDNSLDSLDSFGSRSQHSPSPDVVNRGNSDGRCSDSEADAPSRKPDVRKDDML
ARRTASNDSRCPVPFNQFLPNRANASCYIPTPRRKQHPEEGEQRSHLQTIPEQTKRTGFH
QKPPKTVTWAPESQAEKLKQGEDLEVLEQRRLEKLKKAGIKVLPAAVRYNSTAITEEKEA
RSPSPNIILRSENEFLSSHSPACDSSSDGEQDVETRRVPDVHRDDLASRRVHRSPGNSRV
HQFVPPPACTTKDRERWEGIRRASQQTLQQTEISVKEAVCDIITRKDNPSLKEEEDEGEE
GKDKAMPNKQRDDLARRRGQSRPLPQRDGPMSFVSSSMSPSDVQKWERLRMTEPSEDRPA
PVCQACLQRTYGISGSAKAGRVHGRVVTFGGLTEIEQPTEAAMSRGEELESLRRLQSKAT
VAMTTVDLGFQLSEGDRSVVMDGCASSPPPAEHRPWTAEPTPTAAEIDARFALYEQRAQA
EDEEEEEERIPDLQKDDMMARRTGAFLKQTAGSADFRRFLPPPGSGWSSRGEIAADAAPP
SNKEVLICTRAASQKPRIPEETTHCSLKPAVIRAPTQTEGEPDESDRDKNILDLDRDDMV
AQRSGTFQKAVAFRGNQGFNQFLPVPGSVRRNISSETAGKQSGNRSKLRADMDGGSGCVA
MAAELEAPPFKAPSSPTCPGLAGRQVPDAAVINAIGPSSSSSSSLICPPSPLSAHTWRVE
EQVEAGREEEKSEDGKMRREKKPCWLEDELPPMMVSRRVAFLLDNESASMGDMANEDEAG
HFPSLSPSRFERMHQQCNAFVEEEDQWQDDLARWKNRRRSTSQELIKKEEERKRMEKRMK
GNGVDGNKRKSIKTYKEIVEEKERREAELCEAYRQAATPEEAALVLQRYALRFTISDATL
DSLKLPRSTNKPNQFLNQTEQEHSQTSGADDSERLERPSQQDTDGLTEQERCGQTEDSHE
KHQPGVNLSSSSAPDALQLKDTNSHSEKFQSEQLPEPPSHLTDPHDEHKNQPDPEAPQSP
TEPAAAPQPKHKLPSLAPSRPLPLLAAKPYCPPRCSPPEHKHVEVQQLDGSVQLNGDTAE
DFASLLDPLQENPAVSSPHTQEVDPPEDSAEQQQPPLPERPTPTSGSAINSLIAGRNCII
TTTIVTELTKTHVEPLHPDVQDDAQDGATETPAEKENPQPVQSPSSLPEYSPSVSEGLEE
SSVTIETPMLNLAKRVNHWVWDPNEERKRLESWQQEQERLLQEQYQKEQEKLKKEWEKAQ
LEVEEEERKHNEEERRILEETVAPLSPSASVQRQLERMATAPFSAEENNKAAVRGNVSLQ
QNGQKIHTGSEDQHASKLHFFQDPGCDEQLPQKQEMWKTSSLDRSPQTNQMQNVKRSESH
DAVAGNQDVSPSAPQPPSPSRCVSGKRLCSGCSKPLERGAAMIIDTLGLFFHMQCFKCGV
CKGQLGDATAGTDVRIRNGLLSCYECYIASRGRGQPTPL
NT seq
4980 nt
NT seq
+upstream
nt +downstream
nt
atggccggtcccgagccgagccatcccgagccagcctgcctggaggcgcagaaatggatc
gaggctgtaacagggaagagctttggagacaaagacttccgcagcgcgctagagaacggc
atcctgttatgcgagctgctgagtgcaatcaaacccgggctggtgaagaagatcaacaga
ctgcccacccccatcgccgggctggacaacttgtccgtcttcctccggggctgtgaggag
ttgggcttgaagggctcccagctgtttgacccgggggacttacaggatacttccatacgc
gccaatctcaaggactctgactgcaaccgcaaactaaaaaatgtgctgaacacggttttc
tggcttggaaaagctgccagtgggtgtccttcctacagcggtcctaatctgaacctgaaa
gagtttgaagggctactggctcaaatgaagttggaaagcgacgatggcggcgacagctct
cagaagcgcagcgttcgagacagcggctacgactgctgggactcggagaggagcgagtct
ctctctccgcctcaacacactcgggacaactctcttgacagtctggattccttcggttcc
cgctcgcagcacagcccctctcctgatgttgtgaatcgaggcaacagcgatggacgatgc
agcgactcggaggctgatgctcccagcaggaaacccgacgtacggaaagatgacatgttg
gccagaagaacagccagcaacgactccagatgcccggttcccttcaaccagtttcttcca
aaccgagccaacgccagctgctacatcccgaccccacgacgcaaacaacacccagaggaa
ggagagcagcggagtcaccttcagaccattccagaacaaaccaaacgaactggatttcat
cagaaaccccccaaaacggtgacttgggcacctgaaagccaggctgaaaaactgaaacag
ggagaggacttggaggttttggagcagaggaggctggagaagttgaagaaggcaggaatt
aaggttctacctgctgctgttcgctacaacagcactgcaataacggaggaaaaagaagcg
aggtcaccgtctccaaacatcattcttcgctctgaaaatgaatttttgagctcccacagt
ccggcttgtgattcctcctccgacggggagcaggacgtggagacgaggagggttcccgat
gtccacagagacgacttggcgtcccgacgagtccaccggagcccaggtaactccagggtc
catcagttcgtccctcctccagcctgcaccaccaaagacagagagcgctgggagggcatc
aggcgagcctcacagcagaccctgcagcagacggagatcagcgtgaaggaagcggtctgt
gacatcataacccgtaaagacaacccctccctgaaggaagaggaggatgagggagaagag
ggaaaagataaggcgatgccaaataagcagagagatgacctggctcgtaggcggggccaa
agcaggcccctccctcagagggacggaccaatgagctttgtttcctcctccatgagtccg
tctgatgtacagaagtgggagaggctcaggatgactgaaccaagtgaggataggccagcc
cccgtgtgtcaggcttgtctgcagagaacttacggaatcagcggatcagcaaaggctgga
cgagttcatggcagggttgtgacctttggaggtctgactgagatcgagcagccgacagag
gcagccatgtcgagaggggaggagctggagtcgcttagacgactccagtccaaagcaacg
gtagccatgactaccgttgacctgggcttccagctttcagagggggatcgcagtgttgtc
atggatggctgtgcatcctcccctccccctgcggaacaccgaccctggaccgccgaaccc
acccctacggccgccgagatagacgctcgttttgctctgtacgagcagagagcacaggca
gaagacgaagaggaggaagaggagcggatccctgaccttcagaaggacgacatgatggcc
aggaggacaggtgctttcctaaaacaaacagctggctcagcagatttcaggcgtttcctg
cctccgcccgggtctgggtggagcagccgaggggaaattgctgctgatgctgcgcctcct
agcaacaaggaagtgctcatctgcaccagagcggccagccagaagcccagaatcccagaa
gaaacaactcactgctcactgaagcctgcagtgatcagagcaccgacccaaactgaaggc
gaacccgatgagtccgatagagacaagaacatcctcgatctggacagagacgacatggtg
gctcagaggagcgggacattccagaaagcggtggccttcagaggaaatcagggcttcaat
cagttcctgccggtacctgggtcggtcagacgcaacatcagttcagagactgcagggaag
cagtcaggcaacagatccaaactcagagcagacatggatggaggaagcggctgtgttgcc
atggcagcggaacttgaagctccgcctttcaaagccccgtccagcccgacgtgtcctggg
ctggcgggcaggcaggtccctgatgcagctgttatcaatgcgatcggaccatcctcttcc
tcctcctcctcactcatatgtcctcccagtcctctctcggctcacacctggagggtggag
gagcaggtggaggcgggaagagaggaggagaaaagcgaggatgggaagatgaggcgggaa
aagaaaccatgctggctggaggatgagcttcctccaatgatggtgagccgacgagttgct
tttctcttagacaacgagagtgcgagtatgggagacatggccaacgaggatgaggcggga
cacttcccttcgctgagcccatcacgattcgaacgcatgcaccagcagtgcaacgctttc
gtggaagaggaggaccagtggcaggatgacctggcccgttggaagaaccgccgccgcagc
acgtcacaggagctgattaaaaaggaggaggagaggaagaggatggagaaaaggatgaag
gggaacggagtggatggcaataagaggaagagcattaagacttacaaggagatcgtggag
gagaaagaacgcagggaagctgagctgtgtgaagcgtacagacaagcagcgactccagag
gaggcagctttggttttacagcgctacgccctccgcttcaccatcagcgatgcaacactg
gacagcctgaagctgcccagaagcactaacaaacctaaccagttcctgaaccagacagag
caggaacacagccagacatcaggcgccgatgactcagagaggctggagcgtccaagccag
caggacacagacggtctcaccgaacaggaacgctgtggacagacagaggacagtcatgaa
aaacatcagcctggtgtgaacctcagcagctcttctgcaccagatgccctccaactcaaa
gacacaaactcacacagtgagaagttccagtcggaacagcttcctgagcccccctcccac
ctgacagaccctcatgatgagcataagaatcagccagacccagaagcccctcagtccccc
actgaacctgctgctgcacctcaacccaaacacaaactcccctcccttgcgccctccaga
ccgctcccactgctggcggccaagccctactgcccgcccaggtgttctcctcctgaacac
aaacatgtggaggtccaacagctggacgggtcggtgcagctaaacggagacacagctgag
gactttgcttcccttctggacccgctacaggaaaacccagccgtttcctccccgcacaca
caggaagtggatcccccagaggacagcgcagagcagcagcagcctccactgcccgaaagg
ccaaccccgacttcaggctccgccatcaactccctgatcgcaggccgaaactgcatcatc
accaccaccatcgtgacagaacttacaaagacccacgtggagccgctccacccggacgtc
caggacgacgctcaggatggagccactgagactccagcagagaaagagaatcctcagcct
gtccaatcacccagcagtttaccagaatattctcccagtgtctccgaggggctggaggaa
agcagcgtgactattgagacccccatgttgaacttggctaaacgtgttaatcactgggtc
tgggaccccaatgaggagcgtaagcgcttggaaagctggcagcaggagcaggagcgcctc
ctacaggaacaataccagaaagaacaagagaagctgaagaaagagtgggagaaagcccag
ctggaggtggaggaggaggagaggaagcacaatgaagaggaaagacgaattttagaagag
accgtggcccctctcagtccctcagcctcagtgcagaggcagctggagcgcatggccaca
gcgcctttttctgccgaggaaaacaacaaggccgcagtcagaggaaacgtgtctctgcag
cagaacggacagaaaatccacacaggaagtgaggatcagcacgcatcgaagcttcatttt
ttccaggatcctggatgtgatgaacagctcccacagaaacaggaaatgtggaagacatca
tctctggaccgcagccctcagaccaaccagatgcaaaatgtcaaaagatcagaatcacat
gatgctgtagcaggtaaccaggacgtctccccttcagcacctcagcctccgtcacccagc
aggtgtgtcagtgggaagcgactttgttcgggctgctccaaacctctggaaagaggagct
gctatgatcattgacactctgggcctgtttttccacatgcagtgttttaagtgtggcgta
tgcaaagggcaactgggtgacgctacagcagggaccgacgtcaggattcggaacggactg
ctgagctgttatgagtgctacatcgcatctcgaggcagaggtcagcccactcctctataa
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