Xiphophorus couchianus (Monterrey platyfish): 114144706
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Entry
114144706 CDS
T05908
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
114144706 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xco03021
]
114144706 (taf5l)
03036 Chromosome and associated proteins [BR:
xco03036
]
114144706 (taf5l)
Transcription machinery [BR:
xco03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
114144706 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
114144706 (taf5l)
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
114144706 (taf5l)
STAGA complex
114144706 (taf5l)
TFTC complex
114144706 (taf5l)
SAGA complex
114144706 (taf5l)
SLIK complex
114144706 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
TFIID_NTD2
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_IFT122_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_Vps41
PROPPIN
Beta-prop_WDR19_1st
Nbas_N
PEP5_VPS11_N
WD_LRWD1
WDR54
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
114144706
NCBI-ProteinID:
XP_027873589
LinkDB
All DBs
Position
5:complement(7346599..7351032)
Genome browser
AA seq
601 aa
AA seq
DB search
MKRVRAEQIQYAVAQYLKRRQYVDTDGSLKGAKLFQSTEELAAGLTVQTESGCANIVSAA
PCQPDPQQYEVQFSRLRCFLSETEISYAQEVSCLLYPLFVYLHLDMVHCGLKGAVDSFYV
RFHDTFLHDGEQRSVVEQLRHVVTAQDVAANPKLRSFLEHKYVVHLTEPAHSYLLRYLQS
DDNSAICRTLSTHLQVEVTASRRTEYQLYGATAGSMAAANAGSWAGVGRAEGGAEALEVP
AGIPQNEVALLALQDCIKKVREGPPSLTTICFYAFHHTEQMLNAAEVSPDSRLLAAGFDS
SAVKLWSLRARKLKAKPHQADVSYIHLACDVQEEEVDEEDGCGSEVKMLHGHSGPVYRTA
FLTDSSGLLSCSEDSTIRYWDLGSFTNTVLYQGHGYPVWDLDVSPCSLYFASGSHDRTAR
LWTFSRSYPLRLYVGHLSDVDCVKFHPNSNYLATGSTDKTVRLWSTQQGQSVRLFTGHRG
AVLALAFSPNGKYLASAGEDQRVKLWDLAAGTLFKELRGHADSITSLSFSPDSSLVASSS
IDNSVRVWDIRSAHGGAPAADGSSGELVGQYVGNTSNVLNVQFMACNLLLVTGTALEKTE
P
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgggtccgggccgagcagatccagtacgctgtggctcagtacctgaagaggaga
cagtatgtggatactgacggctccctgaaaggagccaaactcttccagtccacagaagag
ctggctgctggtctgactgtgcagacagagtcgggctgtgccaacatcgtctctgctgct
ccctgccagcccgacccgcagcagtatgaggtccagttctccaggctccgctgctttctc
tcagaaacagaaatctcttatgcccaggaggtcagctgcctcctctacccgctcttcgtt
tatctccaccttgacatggtgcactgcggcctgaagggggcagtagacagcttctacgtc
cgttttcacgacacctttcttcacgacggggagcagcggtcggtggtggagcagctccgc
cacgtcgtcacggcgcaggacgtcgccgccaatcccaagctgaggtctttcctggagcat
aagtacgtggttcacctgacggagccggctcacagctacctgctgcgctaccttcagagc
gacgacaacagcgccatctgcaggacactcagcacacacctgcaggtggaggtcaccgct
tccaggcgaaccgagtaccagctgtacggagccaccgctggctccatggcggctgccaac
gccggctcctgggcgggcgtgggcagagccgagggcggcgccgaggcgttggaggttcct
gccgggatcccgcagaacgaggtggcgcttctggcgctgcaggactgcatcaagaaagtc
cgcgaaggccctccgtcgctcaccaccatctgcttctacgccttccaccacacggagcag
atgctgaacgcggcggaggtttcgccggacagccggctgctggcggccgggttcgacagc
tccgccgtgaagctgtggagcctccgggccaggaagctgaaggccaaaccgcaccaggcc
gacgtgtcgtacatccacctggcgtgcgacgtgcaagaggaggaggtggacgaggaggac
ggctgcggcagcgaggtgaagatgttgcacggccacagcggtcccgtctatcgcaccgcc
ttcctgaccgacagctccggcctgctgtcctgctccgaggactcgaccatccgctactgg
gacctgggcagcttcaccaacacggtgctgtaccagggccacggctacccggtgtgggac
ctggacgtcagcccctgcagcctctatttcgccagcggctcccacgaccgcactgcccgc
ctctggaccttctcgcgctcctacccgctgcggctctacgtcggccacctgtctgacgtc
gactgcgtcaagttccaccccaactccaactacctggccaccggctccacggacaaaacg
gtgcggctgtggagcacccagcagggccagtcggtgcggctcttcacgggccaccgcggc
gctgtgctggcgctcgccttctcaccgaacgggaagtacctggcgtcagccggcgaggac
cagcgggtgaagctgtgggacctggcggcggggacgctgttcaaagagctgcgcggccac
gcggacagcatcaccagcctgtccttcagcccagacagcagcctggtggcgtcctcctcc
atagacaactccgtccgcgtctgggacatccgcagcgcacacggcggggcgccggctgcc
gacggctcgtccggcgagctggtgggtcagtacgtaggaaacaccagcaacgtcctgaac
gtccagttcatggcctgcaacctgctgctggtcacaggaacggcgctggagaaaaccgag
ccgtag
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