Xiphophorus couchianus (Monterrey platyfish): 114144752
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Entry
114144752 CDS
T05908
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
114144752 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xco04121
]
114144752 (slx4)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114144752 (slx4)
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
114144752 (slx4)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
114144752 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-met
zf-C2H2_jaz
zf-C2H2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
114144752
NCBI-ProteinID:
XP_027873665
LinkDB
All DBs
Position
5:31320654..31342239
Genome browser
AA seq
1442 aa
AA seq
DB search
MDDSELDFVDLCSKLLKRVRKKEPAGRPSRKAEQQSCSKATRGDKRAVDEQDEHSLSGFS
ATGSEVVCGGTGRDSGDAVQSSAFPPADADLRAKGNVLLRMQEFKRASPQKMMHSNRIEP
AKTDGRTLTAQHQKADKAAAPRSELPESDEALALRLQRELDREAAEAQMVDLEDGGLFFC
QICHRDLSHMTPDGRTQHLNRCLDQNEQSALSLPPPSAVPNCPICGKKFKSQKSRSAHLK
RCSADMGVSPAVLLQALQRQAEESRSSAVAAHLETGGIKRKGPPQPELPARKKPRKKADR
LDEDTMVALALSSSLLEQQKEQQVQSGSSHSSVTPLLTWKPDAAKGRVKKKKVAVPRPPP
LLLVQDAETALARLQERVTALLLRRRSPSPPTPTRRPSKLPCWAGAAPLWRKSTLLGGGS
TCPSQFYAAELQHLFTAELSKPDPVFSSSSNKPESSVPPALPSQMASSSPSTPGTGELHV
GSQALRDLMELAEEGMTLTQYGYADKAKHPSGFIQEEELEDQAEPSDDTASSSRAVRRSD
QPEADRDAVRHESVALSKLSSDLSSMVNNPQLSDVQLQVDSGEVYFAHSFMVYARCPLLA
EMVHESGFGVQEEGMAAAQRVLLSDVPGQAVLAVLRYLYTAHCSVAASLQPHVLELASRF
DLQELERLCHFQPENMAAGDDRLDVNQEENVNNQTDQTFVELLRSMWNEEDSDGDAGDSD
GGGRSEGDQPEDEVAAGDGEIGEERVNEEELEEIYEFAATQRQRVKEEEEKKEEEEDAEP
EPGSDRSYSRLFSQSWGVYHDGEASFSPPLLPHEAAPKHSARTLLQSSASFTDESSLNLP
VPGPSPWRPAQEAGHRRGEEAAAESQARRSALPSPARRDEAELIVLSDSSEEAEADRSFT
GIKPGQNPSPRESVCGSQYSPGDPAGCSPELSWLVPSTPVRSPVGNTKTASMQTDSSMCR
TRLFPRVDLASPSRNTVLTSSTPFKASPERRVSPDNRKSTEVFAAHRSVRDSSKPPSIIS
STPLHADPERQSTSGQMKTGTRVSNRSGQPSSSSPTESSLQPGVTDMNEETSVPDVRDSS
FQQSFMDEPPIAFNDSWGLDACADGDLGGFSLKLDDTEESSSGGRPGVSGPTATSSVQNP
AAGPGPLTTSEDHNGLLDSKIWGSWEGDGGAGEEEDEEEEGLPLSQRADPAAQLKTPKLR
KQKRFRPPVPITPTPHYSDMDTPELKNKLSSFGVRPLPKRQMVLKLKEIHQYTHQLTSSE
EEEGEEAGLPLGRAVSCARFKEPTAPAAAASPVRTDQEEAGDPLSASQGSNASSTAASDE
SERSNPELALSSDGDSDSDVSSSQAASCLQDRLQAVRSFILSDSDLYSRILQYQPLVLSQ
LQQRLKAAGVRLGAAKLVDYLDSQCITFTTAKPGHQAAGRRRGAWTGRGARGGGRRNGAS
KR
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atggatgattccgagctggattttgtggacctctgctccaagttgctgaagcgcgtccgc
aagaaagaaccagcaggcagaccgagcaggaaggcagaacagcagagctgcagcaaagca
acccggggggacaagagagcggttgatgagcaggatgagcattctctgtccgggttttca
gccactgggtcggaggtggtctgtggaggaaccgggcgtgactcgggggatgctgtgcag
tcttctgcttttcctccagctgacgcagacctgagggcaaaaggcaacgtactcctcagg
atgcaagagttcaagagagccagcccacagaagatgatgcacagcaacagaatcgagcca
gcaaagaccgacggccgtactctgactgcacagcatcaaaaagcagataaggcggcggcg
ccccgctctgagctcccagagagtgacgaggcgctggccctgcggctgcagcgggagctg
gacagggaggcggcagaggcccagatggtggacctggaggacggaggccttttcttctgt
cagatctgccaccgggacttgtcacacatgacccccgacgggcgcacacaacacctcaac
aggtgtttggatcagaacgaacagagcgcgctgtctctccccccgccttccgctgtcccc
aactgtcccatctgcggcaagaagttcaagagccagaagagccgctcggcccacctgaag
cgctgctccgcagacatgggcgtctccccggccgttctgttgcaggctctgcagagacag
gccgaggagagccgcagttctgccgtcgccgcacacctagagacgggcggcatcaaaagg
aaagggccgcctcagccggagcttccagcaaggaagaagcccaggaagaaggccgaccgg
ctggatgaggacaccatggtggctctggctctgtcctcctccctgctggagcagcagaag
gagcagcaggttcagagcggttcgtctcacagctccgtgacgccactgctgacgtggaag
ccagatgctgctaaaggacgtgtcaaaaagaaaaaagtagccgtccctcgtcctccgcca
ctcctcctagttcaggacgcagagacggccctggcgaggctgcaggaacgagtcactgct
ctgctgcttcgccgccggtcgccctctcctcccaccccgacgcgacgccccagcaagctg
ccctgctgggcaggtgctgcccccctctggcggaaaagtacactgctgggtggaggctcc
acctgtccgtctcagttctacgctgcggagctccagcacctgtttacggcggagttatcg
aagccagatccggtcttctcaagcagcagcaacaagccggagtcttctgtcccacctgcc
ctgccctcccagatggcgtcctcatctccttccactccagggacgggagagctccacgtg
ggaagccaggccctccgagacctgatggagctggctgaagaaggcatgactctgacccaa
tacggatacgcggacaaagccaagcacccgagcggtttcatccaggaggaagagttggag
gatcaggccgagccgtcggacgacaccgcgagcagcagccgggcagtgaggaggtcagat
cagccagaggcagaccgagacgcagtcagacatgagtcggtggcgctctccaagctgtcc
tcagacctgagcagcatggttaacaaccctcagctcagtgatgtgcagctccaggtggac
agtggagaggtctactttgcgcattccttcatggtgtacgctcgctgccccctgctggct
gaaatggtgcatgaaagtgggttcggtgtgcaggaggagggcatggccgcagctcaaagg
gtgttgctaagcgacgtgccgggtcaggcggtgctggctgtgctgcggtacctctacacc
gcccactgctccgtcgctgcgtcgctgcagcctcacgtgctggagctggcatccaggttt
gacctgcaggagctggagcggctgtgtcatttccaaccggagaacatggcggcgggagac
gacaggctcgacgtaaaccaggaagaaaacgtcaacaaccaaacggaccagaccttcgtg
gagctccttcgatccatgtggaacgaggaggactcagacggagacgccggggactcggac
ggaggaggacggtcggagggggatcagccagaggacgaggtcgctgcgggtgacggagaa
atcggcgaggagcgagtgaatgaggaggagctggaggagatttatgagtttgccgccacg
cagaggcagagggtaaaggaggaagaggagaaaaaggaggaggaggaagatgcggaacca
gaacccggctcggaccgcagctacagtcggcttttctcccagtcctggggcgtctaccat
gatggagaggcttccttctcgcctcctcttctccctcatgaagcggcacccaagcactct
gccaggactctgcttcagtcgtcagcaagtttcaccgatgaatcctccctcaaccttccc
gtccccgggccgtctccgtggcgaccagctcaggaggccggacacaggagaggcgaagaa
gctgcagcagaaagccaagctcgtcgcagcgccctcccttcgcctgcgaggagagacgag
gccgagctcatcgttctgtccgactccagcgaagaggcagaagccgatcggagcttcacg
gggatcaaacccggccagaacccgagtcccagagaatcggtctgtggatcccagtacagt
cccggtgatcccgccgggtgttcgccggagctttcctggctcgtcccttccacgcctgtc
aggtctccggtcggaaacacaaagaccgcctccatgcagaccgacagcagcatgtgcagg
acgcggcttttccccagagtggacctcgcctcgccgtccaggaacacagtcctgacctcc
agcactccttttaaagcctccccagaacgcagagtctctcctgacaatcgaaagagtact
gaagtgtttgcagcccaccgttccgttagagattcctcaaagccgcccagcatcatcagc
agcacgccgctgcatgcggacccagagaggcagagcacatctggtcaaatgaaaacgggg
acacgtgtgtccaaccgttcaggtcagccctcgtcttcttctcctacggagtccagtttg
cagcctggcgtcaccgacatgaacgaagaaacgtctgtcccagatgtgagggactctagt
ttccagcaaagtttcatggatgagcctcctatagcttttaacgattcctggggcctggac
gcctgcgccgacggcgacctgggcggcttcagcctgaagctggacgacaccgaagagtcc
agctccggagggagacctggagtatccggtccaacagctaccagcagcgtccagaaccct
gctgcaggtccaggcccgctgaccacgtcagaggaccacaacggcctgctggactcgaaa
atatggggcagctgggagggcgatggaggagcaggagaggaggaagacgaagaggaggag
ggtcttcctctgtctcagagagcggacccggcggctcagctcaaaactccaaaattgagg
aaacagaaacggtttcgtccgccggtgcccatcacccccacgcctcactactctgacatg
gacacgccggagctcaagaacaaactcagcagcttcggcgtgcggcctttaccgaagcgt
cagatggtcctcaagctgaaggagatccaccagtacacccaccagctgaccagctccgag
gaagaggagggggaagaggcggggctgcccctcggcagagcggtctcctgcgcccggttc
aaagagccgacggcgcccgctgctgctgcgtcccccgtcagaacggaccaagaggaagcc
ggcgatccgctctctgcctcccagggctcaaacgcctcctccaccgccgccagtgacgag
tcagaaaggtccaaccctgagctggctctctcctccgacggcgattcagacagcgacgtg
tcgtcctctcaggccgcttcgtgcctccaggaccgcctccaggcggtgcgctccttcatc
ctgtccgactccgacctgtacagccggatcctccagtaccagcctctggttctctcccag
ctccagcagcggctgaaggcggcgggggtccgcctgggcgccgccaagctggtggactac
ctggactcccagtgcattaccttcaccacggccaaaccgggccaccaggcggccggccgc
aggcggggagcgtggacaggccggggggcgagaggaggcggaaggaggaacggagcttca
aaacgctaa
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