Xiphophorus couchianus (Monterrey platyfish): 114144787
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Entry
114144787 CDS
T05908
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03030
DNA replication
xco03410
Base excision repair
xco03420
Nucleotide excision repair
xco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114144787 (rfc1)
03410 Base excision repair
114144787 (rfc1)
03420 Nucleotide excision repair
114144787 (rfc1)
03430 Mismatch repair
114144787 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xco03032
]
114144787 (rfc1)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114144787 (rfc1)
DNA replication proteins [BR:
xco03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
114144787 (rfc1)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
114144787 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
PTCB-BRCT
AAA_30
AAA_5
AAA_17
RuvB_N
Rad17
AAA_14
AAA_16
AAA_7
nSTAND3
NTPase_1
BRCT_2
AAA_33
RNA_helicase
AAA_18
AAA_19
Motif
Other DBs
NCBI-GeneID:
114144787
NCBI-ProteinID:
XP_027873766
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All DBs
Position
5:complement(14037882..14049992)
Genome browser
AA seq
1176 aa
AA seq
DB search
MDIRRFFGPVSGKPAPNVDRKPDEKRKKKTSSEEDVKKKKKKEEEEEEGSKVKSSKNEEQ
HKSSEKKRKKRQVIESDSDEEEPVMKAKKSSKGKAATSKADPPPKKNPVQYVSETDSDSD
NFQSLKKASKPKQNGANKKSEEDSCSPKVKERVKSPAKPPLSWGKTEIKSPKVPTTLKLA
PPPPPKQTLTSVLDYFGSGEIHRSDKKLVASTKRKAPTQELDDLISDEELARQLQMEEDM
EVEKQVHEDEEFARTLAMLDTEPQPKKSRKNSEEKPSTTTTPKKSRVSVPSKTSRTPPED
VISPSPQKSPAAVRASSKLAMMKKQDEAKDEGAKSKTPTSPRKNKISPKKEPRASSISDM
KFTPKAGTTPAALKTSPKKPESTSTSPDDAEKKKMHTLAFRNYLNRDGPRALGSKEIPEG
AENCLEGCVFVLTGVLESMERDDTKALIERYGGKVTGNVSKKTNYLVQGRDSGASKLDKA
ESLGTVILDEDGLLELIRTKPGKKSKYEIAAEAECKASKTRTPSSEISKVTPKAQKISPS
KGNSRSPKTPSPSKTGQRQRASGSSSSTPTGRGSRQTARRELGLPNTPSSSSAPGPSPPS
PQGDAAGLLWVDKYRPRSLKGVIGQQGEQSCANKLLRWLQNWHRHHSGGPDKPAASRFGK
FGGGKDDGSGYKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVAES
LNNTSIENFYKGTSQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIKNSKIPIICMCND
RNHQKIRSLANYCFDLRFQRPRMEQIKGAMMSLAYKEGIKIPPPALNEIILASNQDVRQV
IHNLSMWSAKDKVMTYDRCKSDAARARKDMKLGPFDVCRKVFASGEETAHMSLIDKSDLF
FHDYSLAPLFVQENYLHVRPAAARGDMTSHLVLLSKTADSIADGDLVDRRIRSSQNWSLL
PTQAIFASVLPGELMRGYMSQFPVFPSWLGKHSSTNKHSRIVQELTAHMSLKTLSSRQAV
NLDYMHYLRQALLHPLQRHGAEGAAQAVQLLDDYKLLKEDVDSIMEISVWGGQPDPYSKL
DSKVKAAFTRAYNKEVHLTPYSLQAVKKGRRGGGGGADLDGGDEGPDDQESGDEAEGLKA
DAMIKQKKTKTTKESTKEKKQESGKGKGKGKGKAKK
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttggaccggtatcaggcaagcctgccccaaacgtagacaga
aaaccagacgagaagaggaaaaagaagacttcctcagaagaagatgtgaaaaagaagaag
aagaaggaggaggaggaggaggagggctccaaggtcaaaagctccaaaaatgaagagcaa
cacaaaagcagcgagaagaaaagaaagaaacgccaagttatagaatcggattcagacgag
gaagagccggtgatgaaggctaagaaatcctccaaagggaaagctgcgaccagcaaagca
gatccgcctcctaagaagaatcctgtgcagtacgtctctgaaacagactcggacagtgac
aactttcagagtctgaagaaggcctccaagcccaaacagaacggcgctaataaaaagtca
gaggaagacagttgcagtcctaaagtcaaagagcgagtcaagtctcctgctaagcctcct
ttgagttgggggaaaactgagataaagagtcccaaagttcctacaacccttaaactagcc
cctccccctccgcctaagcaaactctcacctctgtactcgactacttcggcagcggagag
attcaccgctcagacaagaagctggtagccagcaccaaacgaaaggctccgactcaagag
ttagacgacctgataagcgacgaggaattggcccggcagctgcagatggaggaggacatg
gaggtggaaaaacaagtccatgaggacgaggagtttgccagaacgttggccatgctggac
accgagccacagcccaaaaaatctcgcaaaaactctgaggaaaaaccaagtacaaccacg
acccccaagaagagccgcgtgagcgtcccgtcgaagaccagtcggactcctccggaggac
gttatcagtccgtcgccccagaagagccccgctgctgtcagagccagctccaagctggcc
atgatgaagaagcaggacgaggcgaaggacgaaggcgcgaaaagcaaaacacccacttca
ccgaggaaaaacaaaatctctccgaaaaaagagccgcgtgcttcatcgatttcagacatg
aaattcacacccaaagcaggaacgacaccagcggcgctgaaaacgtctcctaagaagccc
gagagcacaagtacgagtcctgacgatgcggagaagaagaagatgcacactctagctttc
aggaattacctcaacagagacggaccacgagcgctgggatccaaggaaatcccagaggga
gcagaaaactgtttggaggggtgtgtgtttgtgctgactggagtcctggagtcgatggag
agagacgacaccaaagctctcattgagcgttacggaggcaaagtgacgggaaacgtcagc
aagaagaccaactacctggtgcagggcagagacagtggagcgtccaaactggacaaggct
gagagtttaggcaccgtcatcctggatgaggacggcttgttggagttgatcagaaccaaa
ccagggaagaagtcaaagtatgagatcgctgcagaagctgagtgcaaagcctcaaaaacc
agaactccttcaagtgaaatctcaaaggttacccccaaggctcagaagatctccccctcc
aaggggaactccaggtcccccaagaccccgagcccctcaaagacgggccagaggcaaaga
gccagtggcagcagcagcagcactccaactgggaggggctccagacagacagcccgaagg
gagctgggccttcccaacacaccctcctcttcctcagctcctggaccctcccccccttcc
ccgcagggggacgctgccggtctcctgtgggtggacaagtaccgtccacgttctctgaag
ggtgtgatcggccagcagggggagcagagctgcgccaacaagctgctccgctggctgcag
aactggcacagacaccacagcggaggaccggacaaacccgcagcatcgaggtttggtaaa
tttggaggagggaaggatgacggatcaggatacaaagctgctctgctctctgggcctcca
ggggtggggaagaccaccacagctgccctggtctgtgaggagctgggcttcagctacgtg
gagatgaacgccagctgcactcgcagcaaaaacagcctgaaggaagtcgtggcggagtcg
ctcaacaacaccagcatcgagaacttctacaaaggaacgtctcagacggtgagcagtaag
cacgtcctcatcatggacgaagtggacggcatggctggaaatgaagaccgaggaggaatc
caggaaatgatcggcctgatcaaaaactcaaagattcccatcatctgcatgtgcaacgac
cgcaaccaccagaagatcagatcgttggccaattactgctttgacctgcgtttccagagg
ccgcggatggagcagatcaagggagccatgatgtctcttgcttataaagagggtatcaag
atccctcctccggctctcaatgaaatcatcttggcctccaaccaggacgtgcgacaggtg
attcacaacctgagcatgtggtcggccaaagacaaggtgatgacgtacgaccggtgcaag
tccgacgcggccagggcccgcaaggacatgaagctggggccgttcgacgtctgcaggaag
gtgttcgcctcgggcgaagagacggcccacatgagcctcatcgacaagtctgacctcttc
ttccacgactactctctggcgccgctcttcgtccaggagaactacctgcacgtccgtccg
gctgcggctcgtggagacatgacgtcccacctggtgctgctcagtaagactgccgactcc
atcgccgacggcgacctggtggacagacggatccgatcgagtcaaaactggtccctgctt
cccactcaggccatctttgccagcgtgttgccgggcgagctcatgagaggctacatgtct
cagttccccgtcttccccagctggctgggcaagcactcctctaccaacaaacattcccgc
atcgtgcaggagctgaccgcacacatgagcttaaagaccctgagcagcagacaggcggtg
aacctggactacatgcattacctgcgccaggcgctgctgcatccgctgcagaggcacgga
gcggagggagcggcgcaggccgtgcagctgctggacgactacaagctccttaaggaggac
gtagacagcatcatggagatcagtgtgtggggcgggcagcctgacccctactccaaactg
gactccaaggtgaaggcagctttcacgcgggcgtataacaaggaggtccacctgacgccg
tattccctccaagctgtgaagaaggggcgccgaggaggaggaggaggagcggatctggac
ggaggagacgaaggtccagatgaccaggagtctggggacgaagccgagggcctcaaagca
gacgccatgatcaaacagaagaagaccaaaacaactaaagagtcgacgaaggagaagaag
caagagtccgggaagggcaaaggcaaggggaaaggcaaagcaaagaaatga
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integrated database retrieval system
