Xiphophorus couchianus (Monterrey platyfish): 114144815
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Entry
114144815 CDS
T05908
Symbol
col17a1
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
114144815 (col17a1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
114144815
NCBI-ProteinID:
XP_027873812
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Position
5:complement(2957608..2976887)
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AA seq
1472 aa
AA seq
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MDKVTAVKVVSSSGGAAASSSSVVKKSVTTSGVTSQSDFSFSSGGSGGRVAAGGSEGTSS
SVLIKSSSSHRCGFGAGNERITTVGTSSAQSSGQRSGASGAAVASGRGERSKEAGGGSSG
MSYSFGSGSRETKKEGGLGAVTVSTVTKSSYASGGFREGKGSASSGITYSPPPKERKSVT
TMAAALSDVFDESSDSSLEYSRKKYGSSTATTTSATRGRSQSRESEIRARLQSASPPARW
TELDDVKRLLRGNRSTSTSPTQSPNNTLPIPKKASVEAKATSESSSGPIDQYGSVWSGDV
SSGYYSSNPNNYTATSHLYPSGAGVQNNLTLGSSSANAGQSVSGSVPVYGVQNNLTSPTV
FSPAGAGAQIVYGVQKNVSGITAPTVRPSSPTIYEASGKDFNFVLIEKENAPIKKETELL
IMDKDTGKHFVSTAPATLSGTYSEDSLKREKEKLLSSAVDKGTDAKSSTLKSTTKDKATY
AAIHKDELGFGFCSCCSWWKWLLALVFTLLLLLGLLIGLIVLGVEVGRLKNRVHTLETAT
GIVSALTDNSIYLGPGGGIGARSGQRRAALQSTVQQLLRDELQSNDMRETLAYSLKGEKG
EPGPIGDPGALGQKGDSGFPGLPGPPGQIGHSGLDGPRGPKGNPGEPGPEGQSGQRGREG
PMGPRGESGPPGVGEKGDKGSQGEPGRPGPAGAPGPLGPKGAAGEQGISGVPGVPGPKGF
QGEAGPSGAKGDRGAPGVPGIKGDNGERGPRGPVGESGTPGPQGPSGPKGSKGSGGESGS
IGLPGARGLPGLPGDIGPQGPPGIQGPPGVAGIPGQPGGKGEPGSPGKVIGPINSDTVAI
PGPPGPAGPPGSAGPPGLSGPIGPAGVPGQPGTKGERGDKGEKGDKGDQGQCGEPGTGLS
GPPGLPGSQGEPGPQGPPGEGKQGPPGRRGPPGDPGVGTPGPRGEKGEPGSFLPTSETFF
AGPPGPPGPPGKEGAQGFQGEPGQPGLPGTPGFPGPPGPPGGPVIAGGEPGSSFIPGPPG
PPGPPGPPGSESPAVGQYIADYLQSDSIRQYLAGPPGPPGEPGSPGVSEDALVDNVASRV
ISYIQSSGPGAPGPPGPPGSVSVNDIISLLQRDEVRLYLMGPPGPPGPPGDPGIGGFSFN
PQEVAERVYNLLNQRGALGAPGAPGPPGPPGPPGNLLATGFQSLIGPPGPPGAQGVPGPQ
GPPGPPGPPGFGSYVSSDIRDYLQSVSLKGPPGPPGPPGPEGPPGPIGRMVSFTDHNRDM
LKPERQDYEFDGGDGLSRPMFGPPGPPGAPGPPGHKGESGLGSSTEWGPNSIDLSIMAER
LTDYIKTHGVLDGIVENYNSRIFQGPPGPPGPPGPAWFGSHGNATNIMEIIEAVRQQSPG
PAIHGPRGPPGPPGPPGESRLFGSHTNVVDIMDYIKAHGVIVGPPGRPGPKGDQGLTGAK
GERGYPGPQGYRGPKGDRGDFSLTTRRRSSGV
NT seq
4419 nt
NT seq
+upstream
nt +downstream
nt
atggacaaggtgacagcagtgaaggtggtgagttcaagtggaggagctgcagccagcagc
agctcagtggtcaaaaagtcagtgacaacctctggagttacatcacagagtgatttctct
ttcagctctggtgggtcaggtggacgagttgcagcaggaggatcggagggtacgagcagt
tcagttctgatcaaatctagcagctcccaccgctgtggatttggagccgggaacgaacgc
atcaccaccgtaggaacttcttctgcccagtcctcaggtcagaggtcaggggcctcaggg
gccgctgtggcctcagggagaggagagcggtctaaagaggccggaggagggtcctcaggc
atgtcctacagttttggaagtggaagcagagaaactaaaaaagaagggggtcttggtgct
gtgaccgtttccacggtgaccaaaagcagctacgcatcaggagggttcagggaagggaag
ggctcagcatcctctggcattacgtactcacctcctccaaaggagaggaagagtgtgacc
accatggcagctgctctgtcagacgtctttgacgaaagctcagattcttccctggagtac
agcaggaagaagtatgggagttcaactgcaactacaacttcagccactagagggagaagt
caaagcagagagagtgagatcagagccaggcttcaaagtgcttcacctccagccagatgg
acggagctggatgacgtgaagcgcctgctgaggggaaaccgctccaccagcaccagcccc
acccagtcccccaacaacacactgcccattcccaagaaggccagtgtggaagccaaggcc
acatctgagagctcctcaggtcccattgatcagtacggcagcgtttggtcaggggatgtg
agcagtggatattacagctcaaaccccaacaactacaccgctacctcccatctttacccg
tcaggtgcaggagtccagaacaacctgactctcggctcttcctctgcgaacgccggacaa
tctgtcagcggctccgtgccagtatacggtgtgcagaataacctgaccagtccaacggtc
ttctcacccgctggtgccggcgcacagatagtttatggtgtgcagaaaaatgtctctgga
ataactgcacccacagtgagacccagcagtcccaccatttatgaggcctcagggaaagac
ttcaactttgtgctgatagagaaggagaacgctcccatcaagaaggagacggagctgctc
atcatggacaaagacaccgggaagcactttgtgtcgactgcgcctgccactttgtcaggc
acttactctgaggactcgctgaagagggagaaagagaaacttttgtccagcgcagtggat
aaaggaactgatgccaaatcttcaaccttgaaatctaccacaaaagacaaagcaacctat
gcagcgatccataaagacgagttgggttttgggttctgctcctgctgcagctggtggaag
tggctgctggccctcgtcttcaccctgctgctcctcctggggctcctaatcggactcatc
gttttgggtgtggaggtgggacgcctgaagaaccgtgttcatactctggaaaccgccact
ggcattgtatcagccctaacggataattcaatctaccttgggcctggaggaggcatagga
gccagatcaggacagaggagagccgccctgcagtcaaccgttcagcagctgctcagagac
gaactacaatcaaatgatatgagagaaactcttgcttattctcttaaaggagagaaggga
gaaccaggacctataggtgatccaggggcacttggacaaaaaggtgatagtggctttcct
ggactgccaggtcctcctggacagattggacactcaggactggatggaccaaggggacca
aaaggaaatccaggtgaaccaggtccagaaggacaatcagggcagaggggacgggaggga
ccaatgggtccccggggggagtctggaccgcctggtgttggagagaaaggagataaaggt
tctcagggtgaaccaggacgtcctggtcctgctggagctcctggaccccttggtccaaaa
ggtgctgctggagagcagggtatctctggagtcccaggcgtacctggtccaaagggattc
caaggtgaagctggaccttctggagccaaaggtgaccgtggagccccaggtgttccagga
attaaaggggacaatggagaaagaggacctcgtggaccagtgggtgaatcaggaactcct
ggacctcaaggcccatctggaccaaagggatctaaaggaagtggtggtgaatcaggttca
ataggacttcctggtgctagaggtttaccgggtctccctggtgacatcggtccccaagga
cctcctggaatccaaggacccccaggtgttgcaggaattccaggccagcccggtggtaaa
ggtgaaccaggatctcctggcaaagtcatcggcccgataaactctgatactgtggctatt
cctggacctccaggaccagctggacctccaggttctgctgggcccccaggtttgtctggt
cccattggtcctgctggagtcccaggccaaccaggtacaaaaggagaacgaggggataag
ggagagaagggagacaagggggaccaaggtcaatgtggagagccagggaccggcctttct
ggacccccagggctcccagggtcccaaggtgaacctggacctcaggggcctcctggtgag
ggtaagcaggggcccccgggccgcagaggccctcctggagacccaggtgttggaactcct
ggacctcgaggagagaaaggagagcctggcagcttcttgccaacatctgaaaccttcttt
gctggaccaccaggacctccaggtccacctggtaaagaaggagcacaaggattccaaggt
gaaccaggtcagccggggcttccagggactccagggttcccgggacctccaggacctcca
ggtggcccagtaatagcaggaggggaacctggaagctcattcattcccggaccacctgga
ccaccgggaccaccaggaccacctgggagtgaatcacctgctgttggccagtacattgct
gactatctccagagcgacagcatcagacagtacttggctggacctcctggacctcctgga
gaaccaggctctcctggtgtttcagaagacgccctggtggataacgtagccagtcgagtt
atctcttacatccagagttccggcccgggggcgcctggtcctcctggcccacctggatcc
gtctctgtcaatgacatcattagtctattgcaacgagatgaagtgaggctgtaccttatg
ggtccaccaggcccaccaggacctcctggagatccaggtatcggcgggttctcgtttaac
ccccaggaggtggctgaacgcgtctacaacctcttgaatcagagaggggcgctgggtgca
cctggagctccaggacctcctgggcctccggggcctcctgggaacctgttggcaactgga
tttcagtctcttattggccctccaggaccccctggtgcacagggtgttcctgggccacaa
ggtccgcctggcccccccggaccgccaggatttgggagctatgtcagctcggacatccgt
gactacctgcagagtgtttccctcaaaggccctccaggccctccggggcccccggggcca
gagggccctcctggtccaatcggacgaatggtttcttttacagaccacaacagagacatg
ctgaagcctgaaagacaagattatgagtttgatggtggtgatggtttgagtcgacccatg
tttggacctcctggtccaccgggggcccctggacctccgggacacaagggagagtcaggt
ttgggcagtagcaccgagtggggcccgaactctattgacttatccatcatggctgaaaga
ctgactgattacatcaaaactcatggcgtactggacggcatcgttgagaactacaatagc
aggatcttccagggtcctccagggccacctgggcccccaggtcctgcctggtttggttcc
catggaaacgccacaaatattatggaaattattgaagctgttaggcagcagagccctgga
cctgccatccacgggccccggggaccacccggccccccgggtccaccaggagagagccga
ctgtttggttctcacaccaacgttgttgatataatggactacatcaaagcccatggagtg
attgtgggaccaccagggagaccaggaccgaaaggggaccaaggactaacaggagcaaaa
ggtgaacgaggttatcctgggcctcagggatacagaggaccaaagggtgacagaggagat
ttctcgctgacaacaagaaggagaagttctggtgtttga
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