Xiphophorus couchianus (Monterrey platyfish): 114144906
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Entry
114144906 CDS
T05908
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
114144906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xco04121
]
114144906
Enzymes [BR:
xco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114144906
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
114144906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_4
zf-RING_2
zf-B_box
zf-RING_5
RING_XB3-XBAT31
ANCHR-like_BBOX
U-box
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
114144906
NCBI-ProteinID:
XP_027873938
LinkDB
All DBs
Position
5:18074294..18082894
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AA seq
669 aa
AA seq
DB search
MMAEADESGFSLMSLEDELTCSICLSTFDCPVTIPCGHNFCQNCLLATWKDSYSCPQCRT
LFATRPELKKNTVLSTVVETFRVRSYKTEGAVASKPEKKKRHVIRCDTCMEAEAAQTCLT
CMASFCEEHLRPHRENPIFRLHQLTSPVGDLMERICTDHHKLMELFCSQHQRPICSLCLQ
QVHKGCSFTSPEEQRSKKEMDLREKLVFLDGKLSKNESVISQMRAMQNKLRESAIHRKSA
LSAGYQQMRDMMTKEENDALKAVDKEVETGEVKIRGLISKFSENVDNIGKAKEEILCLLG
QSQTLAFLQTSLNLPQAVSYDPYSPRITLDSKKVVQVEAFALTFKNYLTELLKQPVEARI
PKLIADINTGTFAAGERAASASGHSPTSLGTYQEFEPNIPPVTPRFPRSHSPAPLAKPAL
KKKPQKPAKNPSLTTESSPGNKKLGKSMENLQEFGVKEKPRGRPVAAEKNEVTETTDIPS
EISSAEKRSDLMKYGTVLNFDQRTAHKRIELSENFTKATVSDEHTNYSDCPERFAVCSQV
LASKGFSAGRHYWEVRLSSNNFIGIGLACSSIDRKGPTSRLGRNSKSWCIEWFNVKLSAW
HNSTEVVLVNPNPKRVGVLLDCEEGKATFYNVADRAYPFHSFSFQSAEAVYPAFWIFSSG
SYITLCKLQ
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgatggccgaagccgacgagtctggcttttctctcatgagcctggaggacgagctgacc
tgcagcatctgtctgagcacctttgactgcccggtcaccatcccctgcggacacaacttc
tgccagaactgcctgctcgccacctggaaggactcctacagctgcccccagtgtcggacc
ctgttcgccaccaggccggagctgaagaagaacacggtcctcagcaccgtggtggagacc
ttcagggtcaggtcctacaagaccgaaggtgctgttgcaagcaaacccgagaagaagaag
aggcatgtgatccgctgtgacacctgtatggaagcggaggcagcccagacctgtctcacc
tgcatggcctccttctgtgaggagcacctgcggccccaccgggaaaaccccattttccgc
ctccaccagctgacatcccccgtcggggacctgatggagcggatctgcaccgaccaccac
aagctgatggagctcttctgcagccaacaccagcgtccgatctgcagcctctgcctgcag
caggtccacaaaggctgctccttcacctctccagaggagcaaaggagcaagaaagagatg
gacctgagagagaagttagtttttctggatggaaagctctcgaagaatgagagtgtaatt
tctcaaatgagggccatgcagaacaagctacgggagtcggccatccacaggaaaagtgcc
ttgtcggctgggtatcagcagatgcgggacatgatgaccaaagaggagaatgacgccctg
aaggcagtagacaaagaggtggagactggtgaagtcaaaatcagaggcctcatctcaaag
ttcagcgagaacgtcgacaacattggcaaagctaaagaggaaatcctctgtctgctgggt
cagtcccaaaccctggccttcctgcagacttcacttaaccttccccaggctgtaagctat
gacccttacagccctcgaatcactctggattccaagaaggtcgtgcaagtcgaggccttt
gctttgacatttaagaactacttgacggagctcttgaagcaacccgtggaggccagaatc
ccaaaactcatagcagacattaatactggcacatttgcagcgggtgaaagagcagcttct
gcctctggacattcacctacgagtcttggaacttatcaggaattcgagccaaacattccc
ccagtgacccctcgattccccagatcccacagtccagctcctctggccaaaccggcccta
aagaagaaacctcaaaaacccgcaaaaaacccttctctgaccaccgaatccagtccaggc
aataagaaactgggaaaatcgatggaaaacctgcaggagtttggcgtgaaagaaaaacca
aggggacgtcctgttgctgctgaaaaaaatgaagtaactgagactacagacattccctca
gagataagctctgctgagaaacgaagtgaccttatgaaatatggcactgtgctcaatttt
gatcaaaggacggcccataaacgcatcgagctaagcgagaatttcactaaggccacggtg
tccgacgagcacacaaactactccgactgcccagagcgctttgccgtctgctcccaggtc
ctggcctccaaggggttctccgcaggccgccattactgggaggtgcgactgagcagcaac
aacttcatcggcatcgggctggcttgcagcagcatcgaccgcaagggccccaccagcagg
ctcggccgcaacagcaagtcctggtgcatcgagtggttcaatgtgaagctgtcggcctgg
cataacagcacggaggtggtgctggtcaatccgaacccgaagcgcgtcggggtgctgttg
gattgcgaggagggcaaggctacgttctataacgtggcggacagggcgtatcccttccat
tcgtttagttttcagtccgctgaggccgtctacccagccttctggattttctccagtggc
tcttacattactctgtgcaagcttcagtag
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