KEGG   Xiphophorus couchianus (Monterrey platyfish): 114144906
Entry
114144906         CDS       T05908                                 
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1
  KO
K10652  tripartite motif-containing protein 25 [EC:2.3.2.27]
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04622  RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:xco00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    114144906
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xco04121]
    114144906
Enzymes [BR:xco01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     114144906
Ubiquitin system [BR:xco04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    114144906
SSDB
Motif
Pfam: SPRY PRY zf-RING_UBOX zf-C3HC4_2 zf-C3HC4_3 zf-C3HC4 zf-C3HC4_4 zf-RING_2 zf-B_box zf-RING_5 RING_XB3-XBAT31 ANCHR-like_BBOX U-box zf-UBP_var
Other DBs
NCBI-GeneID: 114144906
NCBI-ProteinID: XP_027873938
LinkDB
Position
5:18074294..18082894
AA seq 669 aa
MMAEADESGFSLMSLEDELTCSICLSTFDCPVTIPCGHNFCQNCLLATWKDSYSCPQCRT
LFATRPELKKNTVLSTVVETFRVRSYKTEGAVASKPEKKKRHVIRCDTCMEAEAAQTCLT
CMASFCEEHLRPHRENPIFRLHQLTSPVGDLMERICTDHHKLMELFCSQHQRPICSLCLQ
QVHKGCSFTSPEEQRSKKEMDLREKLVFLDGKLSKNESVISQMRAMQNKLRESAIHRKSA
LSAGYQQMRDMMTKEENDALKAVDKEVETGEVKIRGLISKFSENVDNIGKAKEEILCLLG
QSQTLAFLQTSLNLPQAVSYDPYSPRITLDSKKVVQVEAFALTFKNYLTELLKQPVEARI
PKLIADINTGTFAAGERAASASGHSPTSLGTYQEFEPNIPPVTPRFPRSHSPAPLAKPAL
KKKPQKPAKNPSLTTESSPGNKKLGKSMENLQEFGVKEKPRGRPVAAEKNEVTETTDIPS
EISSAEKRSDLMKYGTVLNFDQRTAHKRIELSENFTKATVSDEHTNYSDCPERFAVCSQV
LASKGFSAGRHYWEVRLSSNNFIGIGLACSSIDRKGPTSRLGRNSKSWCIEWFNVKLSAW
HNSTEVVLVNPNPKRVGVLLDCEEGKATFYNVADRAYPFHSFSFQSAEAVYPAFWIFSSG
SYITLCKLQ
NT seq 2010 nt   +upstreamnt  +downstreamnt
atgatggccgaagccgacgagtctggcttttctctcatgagcctggaggacgagctgacc
tgcagcatctgtctgagcacctttgactgcccggtcaccatcccctgcggacacaacttc
tgccagaactgcctgctcgccacctggaaggactcctacagctgcccccagtgtcggacc
ctgttcgccaccaggccggagctgaagaagaacacggtcctcagcaccgtggtggagacc
ttcagggtcaggtcctacaagaccgaaggtgctgttgcaagcaaacccgagaagaagaag
aggcatgtgatccgctgtgacacctgtatggaagcggaggcagcccagacctgtctcacc
tgcatggcctccttctgtgaggagcacctgcggccccaccgggaaaaccccattttccgc
ctccaccagctgacatcccccgtcggggacctgatggagcggatctgcaccgaccaccac
aagctgatggagctcttctgcagccaacaccagcgtccgatctgcagcctctgcctgcag
caggtccacaaaggctgctccttcacctctccagaggagcaaaggagcaagaaagagatg
gacctgagagagaagttagtttttctggatggaaagctctcgaagaatgagagtgtaatt
tctcaaatgagggccatgcagaacaagctacgggagtcggccatccacaggaaaagtgcc
ttgtcggctgggtatcagcagatgcgggacatgatgaccaaagaggagaatgacgccctg
aaggcagtagacaaagaggtggagactggtgaagtcaaaatcagaggcctcatctcaaag
ttcagcgagaacgtcgacaacattggcaaagctaaagaggaaatcctctgtctgctgggt
cagtcccaaaccctggccttcctgcagacttcacttaaccttccccaggctgtaagctat
gacccttacagccctcgaatcactctggattccaagaaggtcgtgcaagtcgaggccttt
gctttgacatttaagaactacttgacggagctcttgaagcaacccgtggaggccagaatc
ccaaaactcatagcagacattaatactggcacatttgcagcgggtgaaagagcagcttct
gcctctggacattcacctacgagtcttggaacttatcaggaattcgagccaaacattccc
ccagtgacccctcgattccccagatcccacagtccagctcctctggccaaaccggcccta
aagaagaaacctcaaaaacccgcaaaaaacccttctctgaccaccgaatccagtccaggc
aataagaaactgggaaaatcgatggaaaacctgcaggagtttggcgtgaaagaaaaacca
aggggacgtcctgttgctgctgaaaaaaatgaagtaactgagactacagacattccctca
gagataagctctgctgagaaacgaagtgaccttatgaaatatggcactgtgctcaatttt
gatcaaaggacggcccataaacgcatcgagctaagcgagaatttcactaaggccacggtg
tccgacgagcacacaaactactccgactgcccagagcgctttgccgtctgctcccaggtc
ctggcctccaaggggttctccgcaggccgccattactgggaggtgcgactgagcagcaac
aacttcatcggcatcgggctggcttgcagcagcatcgaccgcaagggccccaccagcagg
ctcggccgcaacagcaagtcctggtgcatcgagtggttcaatgtgaagctgtcggcctgg
cataacagcacggaggtggtgctggtcaatccgaacccgaagcgcgtcggggtgctgttg
gattgcgaggagggcaaggctacgttctataacgtggcggacagggcgtatcccttccat
tcgtttagttttcagtccgctgaggccgtctacccagccttctggattttctccagtggc
tcttacattactctgtgcaagcttcagtag

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