Xiphophorus couchianus (Monterrey platyfish): 114145239
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Entry
114145239 CDS
T05908
Name
(RefSeq) protocadherin-18-like isoform X1
KO
K16499
protocadherin delta 2
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xco04515
]
114145239
Cell adhesion molecules [BR:
xco04515
]
Cadherins
Protocadherins
114145239
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
G1_gp67_N
Protocadherin
Psg1
Motif
Other DBs
NCBI-GeneID:
114145239
NCBI-ProteinID:
XP_027874515
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Position
5:19466281..19474363
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AA seq
1184 aa
AA seq
DB search
MTGLFLTRMLRVATVFVLAAQHITGKTLKYQIFEEQKVGTVIARLRDDVADVLAKLPSSV
SLRFRAMQRGSSSFLTVREQDGEISIRTKIDREKLCEKNLNCSIQFDVLTLPTEHLQLFH
VEVEVLDINDNAPHFARALIPIEISESAAIGARIPLDSATDPDVGENSLYTYALEPNNNF
KIDVQSRSDGVKYAELVVLRELDREVRSSYELQYTASDRGVPPRTGSTLLRISIADSNDN
SPVFEKSSYVINLPENSPVGTLLIDLNATDADDGTNAKIAYSFSNHVSPKIIETFKINTD
SGHLTLIKRVDYETVNSYDIDVQAQDMGPNSMPAHCKILVKVVDVNDNKPDISINFPSQG
NGDAAYVSEASPLDTFVALVRVEDLDSGLNGEVECKLHGQGYFKLQKTYENNYMILTNVS
LDREKRSEFSLTVVAEDRGTPSLSTVKHFTVHVTDENDNPPRFEKGRYEISKSENNAPGA
YLTSITATDPDLDVNGQVSYAILENFIHGSSISTYVTIDPSNGAIYALRTFDREEVNNIS
FVVQAKDAGKPPLTSNSTVVLNILDENDNPPVIVVPQLWNFSADIRASKFTEAGRLVTVV
RATDRDTGVNAELICSIVSGNEEGYFVIEPRTCKIQANTSLENFPHEHAELTVLVRDQGT
ESLSAKAVLKINLQENMKNHVQPVDQGGSPINRSKIIIIILGVIVGKLLVIMVAFVTRYN
REKKEARHSYNCRVAESTHQHNPKKPSRQIHKGDITLVPTVNGTLPIRAHHRSPSTTPPM
DRAQMGVPQNHHSRQSLNSLVTISSNHIPESFALEMAHATPPVEQVSQLLSMLHQGQYQP
RPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDCEMGRESPVDRLLLGEGFSDL
MHLEMHHRLHPATRLCTDECRILGHSDQCWMPPVSSPASSADYRNNMYIPGEESSQPPQL
DDDESSVDSENRKSFSTFGKESGNEELDLSGGGGGGGGGDAAGGGAGSLLTEMNSVFQRL
LPPNIDSYTECTETSPPSSSSTTERASSRGGNIAGNYSNNAVPQDSRRGLLPGGKGPAYP
PGVAAWAANTHYLNPGNTSVVNNHVSSSPSSCSSSTSTNGQPPHLKWLPAMEEIPENYEE
DDFDGVFHQGHQSSKRRDSRHEAGIDTSELAQEINKLLQDVRQN
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgacgggactctttttaacaagaatgctgagagttgccacggtttttgtgctggcggcg
cagcacattaccggcaagacgctgaaatatcagatcttcgaggagcagaaggttggcact
gtaatcgcccgcttgagagacgacgtcgcggatgttttggcaaaacttcccagctcggtg
tctttgcgcttcagagcgatgcaacgggggagctcctctttccttactgtgcgtgagcag
gacggagagatcagcatcaggaccaaaatcgaccgcgagaaactctgcgagaagaatctt
aactgttccatccagttcgacgtcctgacgctccccaccgagcacctccagttgtttcac
gtcgaagtggaagtgctggacattaacgacaacgcgccgcatttcgcccgagccctaatc
cccatcgagatctcagaaagtgcggccattggagcgcgcatccccctggacagcgccaca
gaccccgatgtcggtgagaattccttatacacttacgcactagagccaaataacaacttc
aagatagacgtgcaatctaggagcgacggagttaagtatgccgagctggtggtacttagg
gagctggaccgggaggtgcgctccagctacgaacttcagtacacagcctctgacaggggc
gttcccccaagaacaggatcgacccttctcagaatcagcatagctgactctaatgacaac
agtccggtttttgagaagtcctcctatgttataaatctccctgaaaactcacctgttggc
actctgcttattgatctgaacgccacggacgcggatgacggcacaaatgctaaaatcgca
tactcatttagcaatcacgtgtctcctaaaattatagagacgttcaaaattaacaccgac
agcggtcacctgaccctcatcaagcgtgttgactatgagacagtaaattcttatgacatt
gacgtgcaagctcaagacatgggtccaaactccatgcctgctcactgcaagatcttggtc
aaagtggtagatgtgaatgataacaaaccagacatcagtattaattttccctctcaggga
aatggagatgcagcttatgtgtctgaggcatctccgctggacacatttgttgctttggta
agagtggaagacttggattctgggttaaatggagaagtggagtgtaaacttcatggtcaa
ggttatttcaaactgcagaaaacctatgagaacaactatatgatcttgaccaatgtgtcc
ctggacagagaaaagaggtcagagttcagcctgactgttgtggctgaggacagggggacc
ccgagtctctccacagtcaaacacttcacagtgcatgttacagacgaaaatgacaacccg
ccacgctttgagaagggacgatatgagatctccaaatcggaaaacaatgcccctggagcg
tacctgacatctatcacagccactgaccctgacttggatgtaaatggacaggtgagctac
gccatcttggaaaacttcattcatggaagttccatttccacttacgtcactatagacccc
tctaacggtgccatctatgctctgcgcacatttgaccgggaggaggtgaataatatatcc
ttcgttgtgcaagccaaagacgcaggtaaacctccacttaccagcaactctactgttgtt
ctgaacattctggatgaaaatgataaccctccagtcattgtggttccacagttgtggaat
ttttcagcagacattcgtgcttcaaagttcacagaggctggacgtttagtgacggtggtc
agagcgacagatcgtgacacaggagtcaatgctgagctcatctgctctattgtcagtggc
aatgaagaagggtactttgttattgagccaagaacatgcaagatccaagccaacaccagc
ctagagaacttcccacatgagcatgctgagcttactgtgttggtcagagatcagggaact
gagagtcttagtgccaaggcagttctaaaaatcaacctccaggagaacatgaaaaaccat
gtgcagccagtggaccaggggggttctccgatcaatagatccaaaattatcatcatcata
ttgggagtaatcgttggcaagctcctggtcatcatggtggcctttgtcacccgctataac
agggaaaagaaagaggcgagacactcttacaactgccgggtggctgagtccacccaccag
cacaacccaaagaaaccttcacgccaaattcacaaaggtgacatcaccctggtgcccaca
gtgaacggcaccctccccatcagggcccaccaccgctcaccatcaaccacacctccaatg
gaccgggcccagatgggggttccacagaaccatcacagccgccaatctcttaatagcctg
gtgaccatctcgtccaatcacatcccggagagctttgccctggaaatggcacacgcaact
ccaccagtggagcaagtctcacagcttctgtccatgcttcatcagggccagtaccagccc
agacccagtttccgtggcaacaaatactcccgcagctacaggtacgcattacaggacatg
gacaagttcagcctgaaggacagtggccgtggggacagtgaggcgggggacagtgactgc
gagatggggcgggaatcccccgtggacaggctgctgctgggggaggggttttctgaccta
atgcacctcgaaatgcaccaccgactccacccagctacgagactgtgcacggatgaatgc
cgcatcttgggacactctgaccaatgctggatgccccccgtctcctcacctgcatcatcc
gcagactaccgaaacaacatgtacatccccggagaagagtcctcccagccaccccagcta
gatgatgatgagtcttcggtggactcagagaatcgcaagagtttctccacatttggcaag
gagtctgggaatgaagagctagatctcagtggaggaggaggaggagggggaggaggcgat
gcagctgggggaggggctggatccctcctcacagagatgaactctgtattccagcgactc
ctaccccccaacatagactcatacactgagtgcactgaaacaagcccaccctcatcctca
tcaacaacagagagggcaagcagtcgtggtggcaacattgcaggtaactacagtaacaac
gctgttcctcaagacagccgtagaggtttgctccctggcggtaagggtcctgcttaccct
cctggtgtagctgcatgggctgctaatacacactatttaaatccagggaacacatctgtg
gtgaacaaccatgtttcctcctctccctcttcctgttcatcctccacctccacaaatgga
caaccaccacacctgaaatggctgccagccatggaggaaatcccagagaattacgaagag
gatgactttgatggtgtcttccatcagggtcaccaaagcagcaagcgcagggacagtcgc
catgaggccggcattgatactagcgagctggcccaggagatcaacaaactgctgcaggat
gtcagacagaactga
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