Xiphophorus couchianus (Monterrey platyfish): 114145313
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Entry
114145313 CDS
T05908
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114145313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114145313
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
114145313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
114145313
NCBI-ProteinID:
XP_027874619
LinkDB
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Position
5:complement(12313850..12323369)
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AA seq
550 aa
AA seq
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MSGEEADKTATTDASAGDEEEEWLYGDESESKEEDEEPKLEAAASAPVETSTDDAAAVVV
DVHATGNGVVSESQGEAAGEDVESDSDSDDDDDDVRVTIGDIKTGAPQYTTYGTPPVNLN
IKTPGSRPYGQVTTKVKGVDLDAPGSINGVPVLEVDLESFEEKPWRKPGADLSDYFNYGF
NEDTWKAYCEKQKRLRMGLEVSTIGSVTSKISVQQGRTGNDKDVSSLAVHTSKTDFTSPV
SLYKSAVSQITRKTSGTIDVIGGQTATISRVEGRRRHNLEGNNIQVISEHSTSEAEPAAA
KIPTFFPPGPLPPNIPPPPFLPPPPNVSTAPPLIPPPRLPITVPPPGFHPPTSGPPPSLI
PTMDSHTGGYDGRSVPPYPFPQGAYPPPLTGGVPPPWPPMVDNSKPWDYYSRREDKRDKE
RDRPRERTHEREREREHSPSTMSYTRSEGQIQQCDEERYRYREYQERGYAERHRDRASRE
KEERHRERRHREKEEGRHKSSRSSSSRRRHDSEEGDSHRRHKHKKSKRSKEGKEASEDMG
ADQENQEAME
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgtccggggaggaggcggacaaaacagccaccactgacgccagcgccggtgacgaagag
gaggaatggctttatggagatgaatcagaaagcaaagaggaagatgaagaacccaaactg
gaagctgctgccagtgcacctgttgagacttcaacagacgatgctgctgctgttgttgtt
gatgtacatgctacggggaacggagtggtctctgagtcccaaggcgaagctgcaggcgag
gatgtggagagcgacagcgacagtgatgatgacgacgacgatgtcagagttaccattggt
gacatcaaaactggagcgccgcaatacacgacatatggcaccccccctgttaacctcaac
ataaagacaccaggatccagaccttatggacaagtaactacaaaggtgaagggagtggat
ttggacgcaccaggaagcattaatggtgttcctgtgctggaggtggacctggagagcttt
gaagagaaaccctggaggaagccaggagccgatctgtcagactatttcaactatggtttt
aatgaggacacctggaaggcttactgtgagaaacagaagaggctgcgaatgggcctagag
gtctctacaattggctcagtgaccagcaagatctctgttcagcagggcagaacaggaaat
gataaggatgtatccagtttggctgttcacacctccaagacagactttacgtctcctgtc
agcctctacaagtctgctgtcagtcagatcaccaggaagacaagtggtactattgatgtg
attggtggacagacagccacaatcagtagggttgagggaagacgcagacacaacctagag
ggcaacaacatccaggtgatatctgaacattcaacatcagaagctgaaccagccgcagct
aagattcctaccttcttcccccctggaccgcttcctccgaacatacccccgcctcctttt
ctccctcctccaccaaacgtcagcactgcacctcctctcatacctccacccagattgccc
atcacagttcctcctcctggttttcaccctccaacaagcggccctccaccttctctaatt
cccacaatggacagccatactggaggctacgatggtcgctctgtcccaccgtacccattt
cctcaaggtgcttaccctccacccttaactggaggcgtgcctcctccttggccccccatg
gtggacaacagcaaaccctgggactattattcccgtcgggaagacaagagagacaaggaa
cgggaccggcccagagagcgaacgcatgagcgcgagcgagagagggagcacagcccctca
accatgagctacaccaggtcagaaggacagatacaacaatgtgatgaggagcggtatcgc
taccgtgagtaccaagaacgtggttacgcagagcgtcatcgtgaccgggcaagtcgagaa
aaagaggagagacacagagagaggcggcaccgagagaaagaggagggacgtcacaagtcc
tctcgcagcagcagcagtcgacggagacacgacagcgaggagggcgacagccacaggaga
cacaaacacaagaagagcaagaggagcaaggagggcaaagaggctagtgaggatatgggt
gcagatcaggagaaccaggaggctatggagtag
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