Xiphophorus couchianus (Monterrey platyfish): 114145354
Help
Entry
114145354 CDS
T05908
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xco03009
]
114145354 (pdcd11)
Ribosome biogenesis [BR:
xco03009
]
Eukaryotic type
90S particles
Other 90S particles
114145354 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
Suf
HAT_Syf1_CNRKL1_C
TPR_19
OB_RRP5
TPR_16
UTP6_C
NRDE-2
TPR_CcmH_CycH
ARM_TT21
RPN7
TPR_15
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
114145354
NCBI-ProteinID:
XP_027874676
LinkDB
All DBs
Position
5:complement(29029634..29044373)
Genome browser
AA seq
1802 aa
AA seq
DB search
MASVEEDFPRGGKTKKPTDSKVTAERSKVDNLFQQSDEQTTTKKKKGGAKKVKKQKTEEQ
EGGLTLNAAAKSVEILHIKNVREGMLLLGCVKEVADFEVTVSLPCGLQGFLSIRNICDAY
TKLLSKQLDSDVENEEFCSLSQIFWPGMLLRCVVYKMDITKGGSLSIQLSVNPKLVNKSL
TSSSLMAGMVLSGCVESVEDHGTIIDIGVSGTKAFLPEDATKSKQHKSEELKVGQYVTSR
VEEVKNDGRVVWLAAAARASADAKQGWTLTNLLPGLTVKATVKKVTKHGLHLDFLSSFSG
QVDFLHMEQESSYREGLQVRACVLYIEPTTRLVGLSLSSHLLQPVSNVDYAPPGGDRTGE
VVKECKMTTIHHMSGAMLELPDKTPAFAHRNHLKELSDPPNENKVSAMPEHTCRILDFSP
MEQIYFVSLRKSVIEQRFYRYQDIHAGQVVEGTVSVLLSHGMVVHLSEHVKGLVPRTHLS
DILLKNPEKKYVEGMKVKCRVLSVDVDNRKLCLTRKKALVESTLPLFLSYNDARPGRVSH
GFIVSIKNFGCIVRFYGNVKGLVPLEELSSEPIVCPEDVFYIGQVLKAKVLQCDPEKEKL
LLSFKAAAEGETEESTEPPIDCEVGKRVEARVVKKSINSLEVVILPDEGHAVLPTVHLSD
HMSNCPLLWEVLQEGDTISNLICFNKNKQNLTLTKKPRVRSSLEEGAVAKDFSEITVGMQ
LVGCIRNIMSYGVFVEFPYGLVGLAPKSAMSDKFISDTTTAFKLGQTVIAKVTNLDEEKR
RFLVTLKISEVITPAGDARAALLNGIQERRTVKEMLTVRDDGELRQQLAALTVGQKLKLM
VDSATQDRAKFKSDDLPGADVIASKRHVAGVSLTPGQKVNVVILNVDILSTCVHVSVLPK
LLGKKKSLNKGSDCCAVVQFVDQDFAVISLNDAAQLTLLHTCSHLNEVALSEAERLKVGM
TLSVEVVEPSCEQLEGLPLVLRKGSAPKRQRTASENQADSSGHRFGEVLQGKVKSVKPTY
IQVALEDGSTGSVHVSQVVEPAEIKLGSFPTSTVRVGSVIKARVIGGREATSHRFLPFSH
PKFKYTIPELTLIPSRLDPGVDFKPVTAKDKLAVYKPGDEITCFVSKFKSDKKCLEVTSD
PCVTGTVDLLSMITDPKDASHPEKLFKLGQAVRAKVVEASVQPHRFVLSLSGIHKLEKGS
IALGMVTSVQPQVGLVVKLPFGGAGTVSVTDVADTYRSKPLEAFRKDQLIRCYLLDVQNG
KWHLSLRPSRLNPKNTKPAKDPEVLSLDHLQLDQVVRGYVKIVSEQGVFIRLSHNITGRA
QLQQSSKYFINNHKILSSHLPVNTLLTTKILSVDREDQLVDLSLLPADTGKPDVLPESLG
LPLRLVGDAEKRDSKKTKKRLHAESEQKPAEPQIPKKKKKKSSKPKTDGDDSGVEVYFRD
EGEEVKCDFSQVSPSSAGPSRLQVAAGFSWDVGLSSLKPVLETKDGNSSDGEEQDGNEKP
QKKTRHELEQEKKSAEKALLQREAELMDPSLRPQDAAGFERLLLASPSSSLLWLQYMAHH
LQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMYGTQESLKKVFERAVQFCE
PMPVYQQLADIYANSNKIKEAEGLYKTMVKRFRQNKAVWLSYGTFLLQQGQSDAASSLLQ
RALKSLPPKESVDVITKFAQMEFRFGDAERGRNMFDKVLTNYPKRTDLWSVFIDLMVKHG
SQKEVRAVFDRTIHLSVSVKKIKFFFKRYLEYEKKHGTPQSVQAVKEKAMLFVEAKGKDA
AN
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggtagaggaggattttcctcgtggaggcaaaacaaagaagcccaccgacagt
aaagtcacagcggagcggagtaaagtggacaatctgtttcagcagtcagatgaacaaacg
acaacaaagaaaaaaaaaggaggcgccaagaaagtcaaaaagcaaaagacagaagagcaa
gaaggtggcctgacgcttaacgctgctgctaaaagcgtggagattctgcacatcaagaat
gtgagagaagggatgctgttactgggctgtgtgaaggaggtggctgactttgaggtgacc
gtcagcctcccgtgtggcctgcaaggcttcctcagcatcaggaacatctgtgatgcgtac
accaagctgctgagcaagcagctggactcagacgttgaaaacgaggagttctgctctttg
tcccaaatcttctggccgggaatgctgctccgatgcgtggtttataaaatggacatcact
aaaggaggctcgctcagcattcagctgtcggtcaatccgaagctggtcaacaagagcctc
acctcgagctctctgatggctggaatggtcctgagtgggtgcgtggagagtgttgaagat
catggcactataattgacattggcgtgagtggaacaaaagccttcctgcccgaggatgct
acaaagagcaaacagcataaaagtgaagagcttaaagtgggtcagtatgtgacttctcgg
gtagaggaagtaaagaacgacggccgcgtcgtctggctcgccgccgcggctcgggcctcc
gctgacgccaaacagggctggactctcaccaacctcctgccaggcctcacggtcaaagct
accgttaaaaaggtgaccaaacatggcctgcacctggacttcctgtcctccttcagcggc
caggtggattttctgcacatggagcaggagtccagctacagagaggggcttcaggtgcga
gcgtgcgttctgtacatcgagccgaccacccgcctcgtcgggctgagcctgagcagccac
ctcctgcagcccgtgtctaacgtcgactacgctcctcccggcggggaccggaccggagag
gtggtgaaggagtgcaagatgaccacgatacaccacatgtcgggggccatgttggagctg
ccggacaaaaccccggcctttgcgcataggaaccatctgaaggagctaagcgatccgccc
aatgaaaacaaggtctctgcaatgcccgagcacacctgcaggatcctggacttcagcccc
atggagcaaatttattttgttagtttacgaaagagcgtgattgagcagcgattttataga
tatcaggatattcacgccggccaagttgtagaggggacggtgtctgtcctgctgagccac
gggatggtggtgcatctgtcggagcacgtcaaaggtctggtgcctcggacgcacctctcc
gacatcctcctgaaaaacccggagaagaagtacgtcgaggggatgaaggtcaagtgtcgg
gtgctgtcagtagacgtggacaacaggaagttgtgtctgacccggaagaaggcgctggtt
gagagcaccctgccgctgttcctcagctacaacgacgcccgtcccggccgggtgtcccac
ggcttcatcgtgtctatcaaaaacttcggctgcatcgtccgtttctatggcaacgtcaaa
ggtctggtcccgctggaggagctcagctctgagcccatcgtctgtccggaggatgtcttc
tatattggacaggtgctgaaggccaaagttcttcaatgtgacccagagaaggagaagctg
ctgctgtcatttaaggcggcggcagagggagagacggaggaatctaccgagcctccgatt
gactgcgaggttggaaagagggtggaagcaagggtggtgaagaaatccatcaacagtctg
gaggtcgtcatcctcccagacgagggccacgccgtcttacccacagtgcatctctccgat
cacatgtccaactgtccgttactgtgggaggttctgcaggaaggagacaccatttcaaac
ctcatttgctttaacaagaacaagcagaacctcacgctcaccaagaaaccaagggtgaga
tcgtcactggaggaaggagcggtggccaaagatttctctgagattaccgtggggatgcag
ctggttggctgcatcaggaacatcatgtcctatggcgtctttgtggagttcccctacggt
ctcgttggtcttgcacccaaatctgccatgtcggataagttcatcagcgacacgacgacc
gccttcaagctgggccagacggtcatcgccaaggtgaccaacctggatgaggaaaagcgg
cgattcctggtcaccctgaagatctctgaggtcataacgcctgccggggatgcccgggcc
gcgctcctgaacggcatacaggagagacgaactgtgaaggaaatgctgactgtcagagat
gacggagaactgcggcagcagctggctgctctgaccgtcggccagaagctgaagctgatg
gtggattcagcgacacaggacagggccaaatttaagtctgacgacttgcccggtgctgac
gttatcgccagtaaacgccatgtggcgggagttagcctgacccctgggcagaaagtgaat
gtggtcatccttaatgtcgacatcctgtccacctgtgtccatgtttccgtcctcccaaag
ctgctggggaagaagaagtctctgaataaaggctcagactgctgtgcggtggtgcagttc
gtcgaccaggactttgctgtcatctcgctaaacgatgcggcgcagctgactctgctccac
acctgcagccacctgaacgaggtcgccctgtccgaggcagagagactcaaggtggggatg
actctgtcggtggaagtcgtagaacccagctgcgagcaactggaagggctccccctggtg
ttgcggaagggcagcgcgccgaagcggcagcgtacggcttcggagaaccaggcggactct
tcgggacaccgcttcggcgaagtcctgcagggcaaagtgaagtcggtgaagcccacctac
attcaggtggcgctggaggacgggagcacgggcagcgtccacgtatcgcaggtggtggag
ccagccgagatcaagctggggtccttccccacgtccactgtgagagtgggcagcgtgatc
aaagccagggtcatcggaggacgagaagccaccagtcacagatttcttccgttttctcac
cccaaattcaagtacaccattcctgaactcacacttatacccagccgactggatcctggt
gtggattttaaaccagttacagcaaaagataaactggccgtctataagcccggcgacgaa
atcacatgtttcgtatcaaagtttaaatcagacaagaagtgcttggaagtcacctctgac
ccctgcgtcacagggaccgtggacctgctttccatgatcacagatcctaaagatgccagc
cacccagaaaaactgttcaagctgggccaggcggttcgcgctaaagtggtggaagcgagc
gtccagcctcatcgctttgtgctgtcgctctcagggatccataaactggagaaaggcagc
attgcattgggaatggtgaccagtgttcagccacaagtcggcctcgtggtcaagctcccc
tttggcggcgccggaacggtttctgtcactgacgtcgctgacacctacaggtcgaagcca
ctggaggcgttcaggaaggatcagctcatcaggtgttaccttctagatgtgcagaatgga
aagtggcacctgtccctacgtccatcacggttgaacccaaagaacaccaagccagcgaag
gacccagaagtcttgtctttggaccatctgcagctggaccaggtggtccgaggttatgtc
aagattgtgagtgagcagggggtcttcatcaggctgtcgcataacatcacaggaagagct
caacttcaacagtcctccaaatacttcatcaacaaccacaagatcctctctagtcacctt
ccggtcaacaccctcctcaccactaaaatcctcagtgtggacagggaggaccagttggtc
gacctctctcttctccccgcggacaccggaaagccagacgtgcttccggaatccctcggc
ctcccgctgcgtctcgtcggagacgcggagaaacgcgactcaaagaagacaaagaaacgt
ttgcacgccgagagcgaacagaaaccagcggagccccagatcccgaagaagaaaaaaaag
aaatcaagcaaaccaaaaactgatggtgatgacagcggagtggaggtctacttcagagat
gagggggaggaagtaaagtgtgatttttctcaggtgtctcccagctcggcgggtccgtcc
aggctgcaggtggcagccggcttctcctgggacgtggggctgagctccctgaagcctgtg
ttggagacaaaggatgggaactccagcgacggagaggagcaagatggcaacgaaaagccc
cagaagaagacgcgccacgagctcgagcaggagaagaagtcagcggagaaggccctcctg
cagcgggaagcagagctgatggacccgagcctgcggccccaggacgcagccggcttcgag
cggctgctgctcgcctcgcccagcagctcgctgctctggctccagtacatggcccaccac
ctgcaggccacgcagatcgagcaggcccgggctgtggccgagagggccctcaaaaccatc
tccttcagggaggagcaggagaagctgaacgtgtgggtggccctgctgaacctggagaac
atgtacggaacccaggagagtctgaaaaaagtgtttgagcgagccgtgcagttctgtgag
cccatgcccgtgtaccagcagctggccgacatctacgccaactccaacaaaatcaaggag
gcagagggtctgtataagaccatggtgaaacgtttccggcagaacaaagcagtgtggtta
agctacgggaccttcctgctccagcagggccaaagtgatgctgccagctctctcctgcag
agggcgctgaagagtctgccccccaaagagagtgtggatgtaatcaccaagttcgctcag
atggagttccgcttcggcgacgctgagagaggtcgcaacatgttcgacaaagtcctgacg
aactatccgaagcgcacggacctctggtccgttttcatcgacctcatggtcaaacacgga
tcgcagaaggaagtgagggccgtcttcgatcggacgatccacctcagcgtttccgtgaag
aagatcaagttcttcttcaagcgctacctggagtatgagaagaagcacggcacccctcag
agcgtccaggcggtcaaagagaaggccatgttgttcgtggaagcaaaaggcaaagacgct
gcaaactga
DBGET
integrated database retrieval system
