Xiphophorus couchianus (Monterrey platyfish): 114145470
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Entry
114145470 CDS
T05908
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114145470
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114145470
09142 Cell motility
04820 Cytoskeleton in muscle cells
114145470
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xco00535
]
114145470
Proteoglycans [BR:
xco00535
]
Extracellular matrix (ECM) proteoglycans
Others
114145470
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
114145470
NCBI-ProteinID:
XP_027874868
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Position
5:7594726..7623538
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AA seq
687 aa
AA seq
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MAVFRTHQEPLLVVLLQIVLICSAQRSLVGPRGPPGPPGIAGVPGVDGIDGERGEDSTVT
GPVGLPGDNGKDGSSGAPGLPGADGPVGPPGDPGPLGPKGSKGEPGARGPAGEPGVGLDG
TDGIPGTDGLPGELGKVGPPGAKGRRGAVGLPGPLGPRGPPAVYQGEELCPSACPAGLNG
YSGLPGMKGHKGAKGESGEPGRQGHKGEEGDQGPAGEVGAQGLPGPAGARGLPGITGPKG
DRGPRGNPGDVGPRGIQGAPGDPGQRGAIGESGQIGAQGDRGPQGIRGVPGPKGEPGLSG
PDGREGIPGLPGSRGLPGKSGAPGDAGTQGLPGLPGTYGQKGHSGTKGNSGDPGVVGLMG
SPGKQGERGDQGEVGPVGPRGGPGERGERGPDGPPGLPGGRGSKGDPGFPGLPGPAGFRG
QQGDRGPVGLDGPKGDQGPSGAEGIPGEGGEVGDQGEPGEKGSLGPPGETGNKGPEGGRG
LPGKEGKPGQPGPRGMQGDTGVSGLPGHQGQAGKPPTDRHIKQVCMRVMQEQLAQLAASL
SRPESGIAGLPGPPGPPGPPGPSGENGFPGHSGSRGLPGLKGPPGLIGRKGPKGDQGDIG
DRGPTLRGHKGEPGVPGLPGEPGRPAYGTNGRDGERGPRGVPGINGVPGPPGPAGRNGYC
EPSQCIPPMVASPGLGKNSETKGPSDD
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctgtcttcaggacccatcaggagcctctgctggtggttctactgcagattgtgctg
atttgctcggctcagaggagcctggttggtcccagaggcccccccggaccaccaggcatc
gctggagtacctggagtcgacggaatcgatggtgagagaggggaagattccactgtaact
ggcccagtaggtcttcctggagataatgggaaagatgggtcttctggagctccagggctt
ccaggagcagatggacctgtgggacccccgggagatccaggccctttgggcccaaaaggc
tcaaaaggggaacctggagctcggggacctgctggagaacctggagtaggacttgatggg
actgatggtattcctggcacggatgggctaccaggtgaactgggaaaagtaggaccgcct
ggagcgaaagggaggagaggtgccgttggtctgcctggtcctcttggtcctcggggacct
ccagctgtttaccagggtgaggagctgtgtcccagtgcctgcccagcaggactgaatgga
tattctggactcccagggatgaaaggccacaaaggggctaagggcgaatcaggtgagccc
ggaagacaaggacacaagggagaggagggcgatcaaggaccggctggtgaagttggagct
caaggactgccaggcccggctggagcaagaggccttccaggaataacaggccccaaagga
gaccggggacctcgtggaaatcccggtgatgttggtccgaggggaattcagggagcacca
ggggatccaggtcaacgaggagcaataggggagagtggacaaataggagcacagggggat
cggggcccacaaggaatcaggggggtaccagggccgaaaggagaacctggcctttctggt
ccagatggccgggagggaatacctggactgcctggctcaaggggtcttccaggaaaaagt
ggcgctccgggtgacgcaggcacgcagggacttcctggtttaccaggtacatatggccag
aaaggacacagtggcacaaagggtaactcaggagacccaggagttgtgggactgatggga
tctccagggaagcaaggggagcgaggagaccagggggaagtgggacccgtgggacccaga
ggaggacctggtgaacgtggggagagaggacctgatggaccgccaggtttacccggaggc
aggggaagcaaaggggacccaggctttccaggacttcctggtcctgccggtttccgaggc
caacagggagacaggggtcctgttggtctcgacggccccaaaggagaccagggaccttca
ggtgctgaaggaataccaggagagggaggtgaagtgggtgaccaaggagaaccaggagag
aaaggatcgctcggtccaccgggagaaacaggaaacaaaggacctgaaggcggccgcggg
ctgccaggcaaagagggcaagccgggtcagccaggaccacgaggcatgcagggagacacg
ggggtgtcgggactacctggtcaccagggacaggcgggcaaaccaccaacagacaggcac
atcaaacaggtctgcatgagagtaatgcaagagcagctggcccagttagcggccagcctg
agcaggcctgaatcaggcattgccggacttcccggcccccctggtccgcctggcccaccg
ggtccatctggagagaacggtttcccaggccactctgggtcgagaggtctccccggtttg
aagggtccacctgggctaattggccgcaaaggaccaaaaggtgaccagggggacattggg
gatagagggcccacactcaggggacacaaaggggaaccaggagtccctggactaccaggt
gaacccggccgaccggcttacggcacgaacggccgtgacggagagcgggggccgcgtggc
gttccaggaatcaacggcgttccaggccctccgggtcccgctggcaggaatggctactgt
gagccgtcgcagtgcatccctcccatggtggcgtcacccggccttggaaaaaactcagag
acaaagggccccagcgacgactga
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