Xiphophorus couchianus (Monterrey platyfish): 114145830
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Entry
114145830 CDS
T05908
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K08135
collagen type XV alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xco00535
]
114145830
Proteoglycans [BR:
xco00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
114145830
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Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
114145830
NCBI-ProteinID:
XP_027875266
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Position
6:complement(6567142..6658072)
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AA seq
1361 aa
AA seq
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MGAVRLCLALVFLASPVCAQWWNFFWAKPKTTTLLPPLSSPTSSHQKPSTTQGTPSEWGE
RKKEDTVTANHVEDTGTGWTTPSSAPHTSGDLASRNNKKTLTSSSRENSGGIAKGRSENK
PLKQWKSEKASGSHLDLMDLIGIPLPPAVSFTNGFQGFPAYSFGSDANVGRLTRTFVPGP
FYRDFAIIVTVRPTAQRGGVLFAITDAHQKVVELGLALTPVHGGLQRIVLYYTDTEQASH
SHKAAAFSVPDMTDQWTRFTLVVEHNEVRLYMDCGEAERTTFRRRPEKLTFSPNSGIFVA
NAGSTGLDKFEGSVQQLIIRDEPRAAEEQCEEDVTQASGYASGDDPLDDRETEVDSRKRE
DGVKRPVVSLKGESNFPVEAPPTVLPEVELDEYSGHMTPTAANEDLLITESHQTEEAGER
PGHVLIRPGLKGEPGDRGPPGPPGPPGSPGPRYVHKEGRGKPGPQGPPGAPGTPGGDGQK
GGKGEKGEVGQKGQQGFPGLSGEAGAKGDKGDPGVGLPGPPGLPGPPGPPRSRSVPYGPD
ALGSGFEDLDTDTVFIRGPAGPPGPPGPPGPPAPQLSSELTPSHPGPPGSPGGDGLPGEQ
GIPGPAGTDGSPGPPGGAGPKGDQGTPGPPGPKGESGDAGPPGSPGLQGPNGRPGRKGPA
GPPGPPGPPGPPGTKVLVEDMEGSGKSDLLIRTGVRGPQGPPGVPGPPGPPGEDGAPGVP
GLSVKGEPGKRGPDGLQGFAGLPGPRGSKGEKGSPGPKGEPGADGLSITGPPGPPGPPGP
VANLQELLQNATDGMLNFTEFRGPPGPRGPEGLPGQAGFPGPRGPKGDRGPQGIEGATGE
KGEKGEPGVTIAADGSTLSGPRGPQGPKGPKGDRGFPGAIGPVGPMGYPGQKGEYGFPGR
PGRPGMVGRKGDRGESVSLPGPPGPPGPPGPPGRILGLNGESVTKRDSVGLKGAKGDEGT
PGEPGTPAPPLPDAAEGAKGDLGVKGEKGEKGDAGQPGPPGLPGKSGLVGPKGESVVGPP
GPAGTPGPPGAPGLGQPGPRGPPGPAGPPGPAPEYGSDVSVPGPPGPPGPPGSPGYANPV
TTFKTVKALSRETRDQRAAEGTLAYVSERGGELYIRARNGWRKIQLGELIQNGASSSEAS
QALSRAGDRSRPQRVHSQELQEGSRGFQPSYNILPQTIESVPGLHLVALNAPLKGDMRGI
RGADFLCYQQARSVGLTATYRAFLSSHLQDLATIVRKADRNNLPVVNLRGEILFSTWTSI
FSENAGMFNPLTPIYSFDGRNIMTEPAWPEKLVWHGSSKVGTRLTANYCEAWRTGDVAVT
GQAALLQTGRLLGQHPRSCSNHYAVLCIENTYVGNIPQRRT
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgggagctgttcgcctctgtcttgcgctggttttcctggcctctccggtgtgcgcgcag
tggtggaactttttctgggcgaagccaaaaaccaccactcttcttcctcccctttcctct
ccgaccagctcccaccagaagccttccaccacccaggggactccgtcggagtggggagag
aggaaaaaggaggacacggtgacagcaaaccatgtggaggacaccgggacagggtggacg
acgccgtcctctgctccacacacctcaggggatttagcttcccgcaacaataagaaaacg
ttgacatcgtcttctagggagaactcaggtggaatcgccaaaggcaggtccgagaataaa
ccactgaaacaatggaagagtgagaaagcttcaggaagtcatctggacctgatggatctg
attggcatccctctgcctcccgccgtctccttcaccaatggtttccaggggtttccggcg
tacagcttcggaagcgacgccaacgtcggccgactcacaaggacatttgtgcccgggcct
ttctacagggactttgccattattgtcacggtgcgtccgaccgcccagagaggaggcgtc
ctgtttgccatcacagacgcccatcagaaggtagtggagctgggtttggccctgacgccg
gtccacggaggcctccagcgaatcgttctgtactacaccgacacggagcaggcgtcccac
agccacaaagctgctgccttcagcgtcccagacatgacggaccagtggacacggttcacg
ttggtggtggagcataatgaggtgcgtctttatatggactgcggtgaggctgagaggacg
actttccgtcgcaggccagagaaactcaccttttcaccaaactctggcatttttgtcgca
aacgcaggaagcacaggcctcgataagtttgaggggtctgttcagcagctgatcataagg
gatgaacccagagcagcagaggagcagtgtgaagaggatgtgacgcaggcctcggggtat
gcgagcggagacgatcctctggatgacagagagacagaggtggactccagaaaaagggaa
gatggcgtcaaacggccagtcgtctctctgaagggtgagagcaacttccctgttgaagct
ccgcccactgttttaccagaggtggagcttgatgagtattctggtcacatgactccaaca
gcagccaatgaggacctgctgataacagagtctcatcaaacagaagaggcaggagagcga
cctggacacgttctcatcaggcctggcttgaaaggggaaccaggagatcgtggaccgccg
gggccaccggggcctcctggttctccgggacctcgctacgtacacaaagagggccgtggg
aaacctgggccacaaggacctcctggagccccgggaacaccagggggcgatggacaaaag
ggaggcaaaggtgaaaaaggtgaagtgggtcaaaaaggacaacagggatttccaggtttg
agcggagaggctggagctaaaggagacaagggagacccaggcgttggtttgccaggcccc
cctggtcttccaggacccccaggacctcccagatcccgcagtgtcccatatggaccagat
gcccttggttctggctttgaggatctggacaccgatactgttttcatcaggggtccagca
ggtcctccggggcctccgggaccacccgggcctcctgcaccccaactgtcatcagaactg
acccctagccatcccggacccccgggttcacctggtggtgatggacttccaggcgaacag
ggaataccaggtcccgcagggacagatggctccccgggcccaccagggggtgctggacca
aagggcgaccaagggacacctggaccacctggaccaaagggtgaaagtggagatgcgggc
ccaccaggatctcctggactccaagggcccaatggtcgaccaggaagaaagggacctgca
ggtccaccaggaccccctggcccacctggccctccaggaaccaaagtccttgtagaggat
atggagggatcgggaaagagcgacttgttaattaggacaggagtaagaggaccgcagggc
cctcctggcgtaccaggtccccctggaccaccgggtgaggacggcgctcccggtgttcct
gggctttccgtcaagggggaaccagggaaacgaggaccagacggccttcagggctttgca
ggactgccaggtcctagagggtccaaaggagaaaagggcagcccaggaccaaagggcgag
ccaggtgctgacgggctcagtatcacaggaccgcccgggcctcccggacctccaggacct
gttgcaaacctacaggaactgctccagaacgctacagatgggatgttaaacttcacagag
ttcagaggacccccggggcccaggggtcctgaaggtttgccgggacaagccggatttcca
ggccctagaggaccaaagggagacagaggccctcaaggtattgagggagctacaggagag
aagggagaaaagggcgaacctggcgtgacaattgctgcagatggatctactttgtctgga
ccgaggggccctcaggggccaaagggcccaaagggcgaccggggcttcccaggagccata
ggacctgtgggaccgatgggatatcctggtcaaaaaggagagtatggtttccctggacgc
ccagggcgacccggtatggtggggagaaaaggcgaccgaggagaatctgtcagcctgccg
ggtcctcccggtcctccgggtcctcctggtccaccaggaagaattctcggtctaaatgga
gagtcggtgacgaagagagactctgtgggactaaaaggagccaaaggcgatgaagggacg
cctggtgagccgggaacgcccgcacccccgttacctgacgcggcagagggagctaaaggc
gatctgggggtcaaaggtgaaaagggagaaaagggcgacgcgggccagcccggtcctcca
ggacttccagggaaatccggacttgtgggtccaaagggggagtccgttgtaggtccccca
ggtccggctggtactcctggtccacccggagctcccgggctcggacaacctgggccccga
ggcccgcctggtcctgccgggccccccggaccggcccccgaatatggatctgacgtcagt
gtccctggtcctcccggtcctcccggtccaccaggatctccaggctacgctaacccggtg
acgaccttcaagactgtcaaggctctcagcagagagaccagagaccagagagccgccgag
ggaacgctggcgtacgtgtccgagagagggggggagctgtacatcagggcacgcaacggg
tggcgcaaaatccagctcggagagctgattcaaaatggagcttcctcatcagaagcgtct
caggctctgagcagagcgggagatcggagccgaccacaaagagttcacagccaggaactg
caggagggcagcaggggattccagcccagctacaatatcttgccacagaccattgagtcc
gtacctggactccatctagtggcgctgaatgcgccgctcaaaggcgacatgcgcggcatc
cgcggggcagacttcctgtgctaccagcaggcgcgctccgtggggcttaccgccacctac
agggccttcctgtcatcacacctccaggacttggcgaccatagtacggaaggctgaccgc
aacaacctgccggtggttaatctgaggggggaaatattgttcagcacttggacctccata
ttctctgagaatgcgggcatgttcaacccgttgacacccatttattctttcgatggacgc
aacataatgactgagccagcatggccggagaagctggtgtggcacggctccagcaaggtg
ggcacccgcctgaccgccaactactgcgaggcgtggcggacgggcgacgtggcggtgacg
ggccaggcggcgctgctgcagacgggtcgtctgctgggacaacacccccgctcctgctcc
aaccactacgcagtgctgtgtatagagaacacatacgtgggaaacataccccaacggaga
acctga
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