Xiphophorus couchianus (Monterrey platyfish): 114145988
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Entry
114145988 CDS
T05908
Symbol
gtf2b
Name
(RefSeq) transcription initiation factor IIB isoform X1
KO
K03124
transcription initiation factor TFIIB
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
114145988 (gtf2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xco03021
]
114145988 (gtf2b)
Transcription machinery [BR:
xco03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
114145988 (gtf2b)
Prokaryotic type
Archaeal type
TFB
114145988 (gtf2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Cyclin_C
RB_B
Sigma70_r4
BRF2-like_C_cyclin_rpt
KIF9
Motif
Other DBs
NCBI-GeneID:
114145988
NCBI-ProteinID:
XP_027875507
LinkDB
All DBs
Position
6:3044695..3056288
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AA seq
318 aa
AA seq
DB search
MASTSRGESLALPKVQCPNHPDALLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNE
KALKDPSRVGDAQNPLLNGGDLTTMISRGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAF
KEISTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK
EICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATFIARK
AVELDLVPGRSPISVAAAAIYMASQASAEKKTQKEIGDIAGVADVTIRQSYRLIYPRAAE
LFPPDFKFDTPVDKLPQL
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaacgagtcgtggagaatctctggccttacccaaagttcagtgtcccaaccat
cctgatgcgttactggtggaggactacagggcaggcgacatgatttgtcctgaatgtggc
cttgttgttggtgaccgtgtcatcgacgtgggctctgagtggaggacgttttctaatgag
aaggctctcaaagatccatccagagtgggagacgctcagaaccccctgctcaacggagga
gacctgaccaccatgatcagcaggggaacgggcgcggccagcttcgatgagttcggcaac
tcaaagtaccagaaccggcggaccatgagcagctctgaccgggccatgctgaacgccttc
aaagagatcagcaccatggcggatcgcatcaacctgccgagaaacatcgtagacagaaca
aacaacctgttcaagcaggtttatgagcagaagagtctgaagggtcgagccaacgatgcc
atcgcctcagcctgcctctacatcgcctgcagacaagagggcgtaccaaggacatttaaa
gagatctgcgccgtctccaggatctcaaagaaggagatcggcagatgcttcaagctgatc
ctgaaggctctggagaccagcgtggacctcatcaccacgggagatttcatgtcccgcttc
tgctccaacctgggcctgccgaagcaggtgcaaatggccgccaccttcatcgccaggaaa
gccgtggagctggacctggtgcccggcaggagccccatctcagtggccgctgcagccatc
tacatggcctcccaggcctccgctgagaagaagacccagaaagaaatcggcgatatcgct
ggcgttgccgacgtcaccatcagacagtcctaccgactcatctatccacgcgcagcagaa
cttttccctccagactttaagtttgacacgcctgttgacaaactgcctcaactgtga
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