Xiphophorus couchianus (Monterrey platyfish): 114146119
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Entry
114146119 CDS
T05908
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114146119
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114146119
09142 Cell motility
04820 Cytoskeleton in muscle cells
114146119
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xco04147
]
114146119
00536 Glycosaminoglycan binding proteins [BR:
xco00536
]
114146119
Exosome [BR:
xco04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114146119
Glycosaminoglycan binding proteins [BR:
xco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114146119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114146119
NCBI-ProteinID:
XP_027875720
LinkDB
All DBs
Position
6:13672125..13696711
Genome browser
AA seq
1650 aa
AA seq
DB search
MRTRVIIVFLTFFAMILKFTEGKSCVCNGKSRCHCKGVKGNRGEKGFPGYPGPPGPEGHP
GSLGQPGLTGPKGSTGSDGPMGTKGDPGPDGKEGFAGSHGLPGVPGLQGPLGPPGYPGCN
GTDGDPGRPGVEGNPGIDGNRGPPGQPGPKGDSQTTAHSMPGPPGPRGKDGRPGSPGLSG
EIGLRGDIGLRGPPGFAGNTGAPGSKGQEGAPGIRGPKGFRGPPGLPGPPGRTKDFFTGT
LSITDLKGDKGDAGDKGCKGEPGDSESLYHTKGQKGDRGNPGPEGKPGKDGEPGNRGFGG
RPGRRGEPGHPGPPGRMGEKGNIGPPGPPENFESLKGHIGDPGPPGLPGFPGTQGVIGFP
GLPGSPGYALGIYVPGERGFPGPKGHKGDPGDPGGIHMGPPGLNGDPGDQGPRGNRGKPG
RFVNGTDCVIKGLPGTKGVKGLPGPTGNNGYIGDTGERGEICYECQTSGLSGPAGLRGPP
GLPGTNQGRGEKGDPGFPGPSGFPGPPGPIGLPGLPGQLGQKGEPSSNVSPGLKGDKGEP
GLPGRPGPNGSPGSLGLPGSKGTPGPPGELCQSQGVGDPGLPGSPGPQGKEGPIGYPGLA
GYGPPGPPGTKGDTGVPGLPGVPGIPGQKGESGHFHTKGPPGPQGFQGPPGLEGSPGVPG
VPGVPGNPGKAGQKGERGVLILTGNPGPQGQKGDKGLAGPPGTPGWGFPGQSGPPGPPGA
PGEKGDSGHGHPGRPGPPGPPGENGAPGPAGDPGIPGLPGSPGIIGKSGPPGEKGRKGSV
GPPGLPGTKDLCIGLPGPIGFPGENGHTGHIGANGLPGEKGNAGLPGFGSPGLQGGPGPS
GLSVPGPHGTPGQKGSRGRDGWPGERGQIGDRGPDGISGHGPDGKPGNTGRPGPRGDPGP
DGARGRQGPQGMVGDPGDRGPPGLPCPTRIYTGPPGDPGEPGNPGLAGFTGDPGRSGPKG
QRGRPGPQGDLGQRGPPGEPGVDGQAASEVRRGPDGAPGDSGHRGHPGLKGVKGDPGIPG
RPGPDGVPGTTGSKGAAGEPSYVYGPPGPPGQKGEPGSRSDVMLKGQKGEPGIEGQVGVP
GSPGAKGNTGPDGKNGSPGFPGPVGSDGPPGIKGHIGPIGLPGIPGPTGHTGERGIKGSQ
GLDGIPGPPGQKGDTVIIGGVQGRPGDPGPPGPPGDIGPPGLFGRGSPGPEGDRGIPGLP
GRPGESGLPGREGTCIPGPKGDGGFPGNPGNQGHPGPPGPQGLVVSGLKGDRGEPGFPGS
PGFGGPSGNPGPQGPYGPPGVRGFPGPGGDPGPSGRHGPLGDRGDPGYSPGPCGPRGHKG
FPGRPGRKGEPGSVDRIYKPGPPGLPGPKGNQGLPGAMGPPGSLGPPGLPGVKGPGGVSP
PGPAGFTGHKGDKGNTGLPGQVGGPGIPGRKGPRGLPGRAATHYTDGFLIARHSQSIKVP
DCPNGSSLIYSGYSLLFINGNERAHGQDLGTMGSCLPRFSTMPFLFCDTENTCRYASRND
YSYWLSTDKLMPANMVAVTADKVAPYISRCSVCETTSKIIAFHSQNTLIPECPRGWETLW
TGYSFIMQTGAGAEGSSQPLMSPGSCMENFRRVPFIECHGRGTCNYYPDSYSYWLASLDR
NNIFSKPVPRTVKGFSLERVISRCRVCRKS
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atgaggacacgagtgatcatagttttcctgactttctttgcaatgatcttgaagttcact
gaaggaaaaagttgtgtatgcaatggaaaatcaagatgccactgtaaaggagtaaaaggc
aacaggggagagaaaggttttccaggatatccaggtcctccaggaccagaggggcaccca
ggatccttaggtcaacctggactaacaggaccaaagggcagtactgggtctgatggacca
atgggaacaaaaggcgatccgggaccagacggcaaggagggatttgctggatctcatggc
ttaccaggtgttccaggtttacaggggcctctggggcccccaggttatccaggctgcaat
ggaacagatggagatcctggacgtccaggtgttgaaggaaatcctggtattgatggaaat
agaggacccccaggtcagcctggtcctaagggtgactcacagacaacagctcactcaatg
ccagggccaccaggaccacggggaaaagatggaagaccgggttctccaggtttatcaggt
gagataggactacgtggggacattggactaaggggtcctcctgggtttgctggtaatact
ggagctcctggctccaagggccaggaaggagctccaggaattcgaggaccaaagggtttc
cgaggacccccaggcctacctgggcctccaggcaggactaaagacttttttaccggcacc
ctgtcaataacggatttaaaaggagacaaaggtgatgcaggagacaaaggatgcaaaggg
gaacctggagattctgagagcctctaccacacaaaagggcaaaagggagacagaggaaac
ccaggtccagaaggaaagccaggaaaagacggtgaacctggaaatcgtggattcggggga
agaccggggcgcagaggagagccaggacatccaggcccaccaggaagaatgggtgaaaag
ggaaacattggtccacctggtccacctgaaaactttgaatcactcaagggacacattgga
gatcctggccctccaggtcttcctgggttccctgggacccaaggtgttatagggtttcca
gggctccctggatctccaggttatgcacttgggatttatgtaccaggtgaacgtggtttc
ccaggcccaaaagggcataaaggagaccctggggaccctgggggtattcacatggggcct
ccagggctaaatggtgatcctggtgatcaagggcctcggggaaaccgaggcaaaccagga
cgctttgtaaatggaactgactgtgtcattaagggtctccctgggaccaagggagttaaa
ggtttaccaggacctacggggaataatgggtatattggagatacaggagagagaggggaa
atctgttatgagtgtcaaacgtcgggactttcaggaccagcaggtctccgaggtccacct
ggccttcctggcactaatcaaggacggggtgaaaagggggatcccggctttccaggtcct
tcaggttttcctgggcctccagggcctataggtctaccaggattaccaggccagctggga
caaaagggagagccatctagtaatgtttctccagggttgaagggagataaaggagaacca
ggactccctggaagacccggtccaaatggttctcctggatctctgggtttaccaggaagt
aaaggcactccagggcctcctggagaattgtgccaaagccaaggagtaggagaccctggg
cttcctggttcaccaggacctcaagggaaagaaggacccattggctaccctggactagcg
ggttatggacctcctggaccaccagggaccaaaggagacaccggtgtacctggcctgcca
ggagtacctggaattccaggtcaaaaaggggaatctggtcattttcataccaaaggccca
ccaggaccacaaggatttcaaggaccgcctggcttagaaggaagtccaggtgttccagga
gtacctggtgtccctggaaatccaggcaaagcaggacaaaaaggagaaagaggggtcttg
attcttactggaaatccaggaccccaagggcagaaaggtgataaggggctggctggccct
ccaggtactccaggttggggttttcctgggcagtctggtcctccaggccctcctggtgcc
ccaggagaaaagggtgacagtggccatggacaccctggtcgtccaggtcctccgggacca
cctggtgaaaatggagctccagggccagctggcgatcctggaatccctggtcttccagga
agtcctggaataattggcaaatctgggcctccaggagaaaaaggaagaaaaggttctgtt
ggccctccagggcttcctggtaccaaagatttatgtatcggtttacctggaccaatagga
tttccaggagagaatggacatacaggacatataggggctaatggcttgcctggagagaaa
ggtaatgcgggtttacctggatttggttctcctggccttcaaggtggtcctggaccctct
ggtttgtcagttccgggtccacatgggactccggggcagaagggatctcggggtcgagat
ggctggcctggtgaacgaggacaaataggagaccgtgggcctgatggtatatctggacat
ggtccagatggaaaaccagggaatacaggacgacctggaccaagaggggacccgggccca
gacggagcaagaggccgacaaggaccccaaggcatggtgggagatccaggtgatagaggc
cctccaggacttccttgtccgacacgcatctacactgggcctccaggagatcccggagag
ccaggaaatcctggtttagctggtttcactggtgatcctggaagatctggaccaaaggga
cagagaggaagacctggaccacaaggggatctggggcagagaggtcctcctggggaacct
ggcgttgatggtcaagcggcatctgaagttaggcgaggaccagatggagccccgggagat
tctggtcataggggtcatcctgggctcaaaggagtgaagggagaccctggcattcccgga
aggccaggaccagatggtgttccaggtacaacaggcagcaaaggagctgctggagaacca
agctatgtgtacggaccacctggaccacctggacagaagggtgaaccagggtccaggagt
gatgtcatgctcaagggacagaaaggagaacctgggattgaaggacaagtaggtgttcca
ggaagccctggagccaaggggaacacaggacctgatggaaaaaatggttccccaggattt
ccaggcccagttggttctgatggtccccctggaataaaaggacacataggacctattgga
ctaccaggcattccaggcccaacaggccatactggggaacgtggtataaaaggaagccag
ggacttgatggtattcctgggccaccgggtcaaaaaggggacactgttataataggagga
gtacaaggaagacctggtgatccaggcccaccaggtcctcctggggatatcggtccacct
ggtttgttcggcagagggagtccaggaccagaaggagacaggggaattccaggtctacct
ggacgtcctggtgaatcaggactaccaggaagagaagggacttgtattccaggacctaaa
ggtgatggtggattccctggtaacccaggaaaccaaggccaccctggtccaccaggccct
caaggtctcgtagtatcagggttaaaaggagacagaggagagccagggttcccaggaagc
ccaggttttggtgggccctcaggaaatccaggacctcaaggaccatatggtccacctggt
gtacgtggattcccaggaccaggaggagaccctggtccttcagggagacatggccccctt
ggtgacagaggagatcctggatacagcccaggtccatgtggtccacgtgggcacaaaggt
tttcctggacgcccgggtcgcaaaggtgaaccgggctctgttgacaggatatacaaacca
ggacctcctggattacctggtcctaaaggcaatcaaggacttccaggagcaatggggcca
ccaggatcactaggaccgccaggactgcctggcgtcaaaggaccaggaggtgtgagccct
cctggtcctgctggattcactggccacaaaggagacaaaggaaacaccggattaccaggt
caagtaggcggaccaggaattcctggtcgaaaaggaccaagaggtttgccagggagagca
gctacacattacacagatggttttctgattgccaggcacagtcagagcattaaggtccct
gactgccctaatggcagcagcctcatctactctggttattccctcctcttcatcaacgga
aacgagcgagctcatggccaggaccttggcacaatgggaagctgcctccctcgtttctcc
accatgcccttcctgttctgcgatacagaaaatacctgccgctatgcttctcgtaatgac
tattcctactggctgtccactgataagctcatgcctgccaacatggttgccgtcacagct
gataaagttgccccctacatcagcaggtgctcagtttgtgaaacaacctccaaaatcata
gctttccatagccagaacactctgatacctgaatgtcccagaggttgggagaccctgtgg
actggttactcatttataatgcaaaccggagcaggagcagaaggatcctcccaacccttg
atgtctcctgggtcatgcatggaaaatttccgccgagtgccttttattgagtgtcacggc
agaggcacctgtaattactatcctgattcctacagctactggctagcctcccttgaccga
aacaacatatttagtaaaccggttccccggactgtgaaaggattttctctagagagagtc
atcagtcgttgtcgggtctgcagaaaatcctga
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integrated database retrieval system
