Xiphophorus couchianus (Monterrey platyfish): 114146119
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Entry
114146119 CDS
T05908
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04382
Cornified envelope formation
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114146119
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114146119
09142 Cell motility
04820 Cytoskeleton in muscle cells
114146119
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
114146119
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xco04147
]
114146119
00536 Glycosaminoglycan binding proteins [BR:
xco00536
]
114146119
Exosome [BR:
xco04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114146119
Glycosaminoglycan binding proteins [BR:
xco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114146119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114146119
NCBI-ProteinID:
XP_027875720
LinkDB
All DBs
Position
6:13672125..13696711
Genome browser
AA seq
1650 aa
AA seq
DB search
MRTRVIIVFLTFFAMILKFTEGKSCVCNGKSRCHCKGVKGNRGEKGFPGYPGPPGPEGHP
GSLGQPGLTGPKGSTGSDGPMGTKGDPGPDGKEGFAGSHGLPGVPGLQGPLGPPGYPGCN
GTDGDPGRPGVEGNPGIDGNRGPPGQPGPKGDSQTTAHSMPGPPGPRGKDGRPGSPGLSG
EIGLRGDIGLRGPPGFAGNTGAPGSKGQEGAPGIRGPKGFRGPPGLPGPPGRTKDFFTGT
LSITDLKGDKGDAGDKGCKGEPGDSESLYHTKGQKGDRGNPGPEGKPGKDGEPGNRGFGG
RPGRRGEPGHPGPPGRMGEKGNIGPPGPPENFESLKGHIGDPGPPGLPGFPGTQGVIGFP
GLPGSPGYALGIYVPGERGFPGPKGHKGDPGDPGGIHMGPPGLNGDPGDQGPRGNRGKPG
RFVNGTDCVIKGLPGTKGVKGLPGPTGNNGYIGDTGERGEICYECQTSGLSGPAGLRGPP
GLPGTNQGRGEKGDPGFPGPSGFPGPPGPIGLPGLPGQLGQKGEPSSNVSPGLKGDKGEP
GLPGRPGPNGSPGSLGLPGSKGTPGPPGELCQSQGVGDPGLPGSPGPQGKEGPIGYPGLA
GYGPPGPPGTKGDTGVPGLPGVPGIPGQKGESGHFHTKGPPGPQGFQGPPGLEGSPGVPG
VPGVPGNPGKAGQKGERGVLILTGNPGPQGQKGDKGLAGPPGTPGWGFPGQSGPPGPPGA
PGEKGDSGHGHPGRPGPPGPPGENGAPGPAGDPGIPGLPGSPGIIGKSGPPGEKGRKGSV
GPPGLPGTKDLCIGLPGPIGFPGENGHTGHIGANGLPGEKGNAGLPGFGSPGLQGGPGPS
GLSVPGPHGTPGQKGSRGRDGWPGERGQIGDRGPDGISGHGPDGKPGNTGRPGPRGDPGP
DGARGRQGPQGMVGDPGDRGPPGLPCPTRIYTGPPGDPGEPGNPGLAGFTGDPGRSGPKG
QRGRPGPQGDLGQRGPPGEPGVDGQAASEVRRGPDGAPGDSGHRGHPGLKGVKGDPGIPG
RPGPDGVPGTTGSKGAAGEPSYVYGPPGPPGQKGEPGSRSDVMLKGQKGEPGIEGQVGVP
GSPGAKGNTGPDGKNGSPGFPGPVGSDGPPGIKGHIGPIGLPGIPGPTGHTGERGIKGSQ
GLDGIPGPPGQKGDTVIIGGVQGRPGDPGPPGPPGDIGPPGLFGRGSPGPEGDRGIPGLP
GRPGESGLPGREGTCIPGPKGDGGFPGNPGNQGHPGPPGPQGLVVSGLKGDRGEPGFPGS
PGFGGPSGNPGPQGPYGPPGVRGFPGPGGDPGPSGRHGPLGDRGDPGYSPGPCGPRGHKG
FPGRPGRKGEPGSVDRIYKPGPPGLPGPKGNQGLPGAMGPPGSLGPPGLPGVKGPGGVSP
PGPAGFTGHKGDKGNTGLPGQVGGPGIPGRKGPRGLPGRAATHYTDGFLIARHSQSIKVP
DCPNGSSLIYSGYSLLFINGNERAHGQDLGTMGSCLPRFSTMPFLFCDTENTCRYASRND
YSYWLSTDKLMPANMVAVTADKVAPYISRCSVCETTSKIIAFHSQNTLIPECPRGWETLW
TGYSFIMQTGAGAEGSSQPLMSPGSCMENFRRVPFIECHGRGTCNYYPDSYSYWLASLDR
NNIFSKPVPRTVKGFSLERVISRCRVCRKS
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atgaggacacgagtgatcatagttttcctgactttctttgcaatgatcttgaagttcact
gaaggaaaaagttgtgtatgcaatggaaaatcaagatgccactgtaaaggagtaaaaggc
aacaggggagagaaaggttttccaggatatccaggtcctccaggaccagaggggcaccca
ggatccttaggtcaacctggactaacaggaccaaagggcagtactgggtctgatggacca
atgggaacaaaaggcgatccgggaccagacggcaaggagggatttgctggatctcatggc
ttaccaggtgttccaggtttacaggggcctctggggcccccaggttatccaggctgcaat
ggaacagatggagatcctggacgtccaggtgttgaaggaaatcctggtattgatggaaat
agaggacccccaggtcagcctggtcctaagggtgactcacagacaacagctcactcaatg
ccagggccaccaggaccacggggaaaagatggaagaccgggttctccaggtttatcaggt
gagataggactacgtggggacattggactaaggggtcctcctgggtttgctggtaatact
ggagctcctggctccaagggccaggaaggagctccaggaattcgaggaccaaagggtttc
cgaggacccccaggcctacctgggcctccaggcaggactaaagacttttttaccggcacc
ctgtcaataacggatttaaaaggagacaaaggtgatgcaggagacaaaggatgcaaaggg
gaacctggagattctgagagcctctaccacacaaaagggcaaaagggagacagaggaaac
ccaggtccagaaggaaagccaggaaaagacggtgaacctggaaatcgtggattcggggga
agaccggggcgcagaggagagccaggacatccaggcccaccaggaagaatgggtgaaaag
ggaaacattggtccacctggtccacctgaaaactttgaatcactcaagggacacattgga
gatcctggccctccaggtcttcctgggttccctgggacccaaggtgttatagggtttcca
gggctccctggatctccaggttatgcacttgggatttatgtaccaggtgaacgtggtttc
ccaggcccaaaagggcataaaggagaccctggggaccctgggggtattcacatggggcct
ccagggctaaatggtgatcctggtgatcaagggcctcggggaaaccgaggcaaaccagga
cgctttgtaaatggaactgactgtgtcattaagggtctccctgggaccaagggagttaaa
ggtttaccaggacctacggggaataatgggtatattggagatacaggagagagaggggaa
atctgttatgagtgtcaaacgtcgggactttcaggaccagcaggtctccgaggtccacct
ggccttcctggcactaatcaaggacggggtgaaaagggggatcccggctttccaggtcct
tcaggttttcctgggcctccagggcctataggtctaccaggattaccaggccagctggga
caaaagggagagccatctagtaatgtttctccagggttgaagggagataaaggagaacca
ggactccctggaagacccggtccaaatggttctcctggatctctgggtttaccaggaagt
aaaggcactccagggcctcctggagaattgtgccaaagccaaggagtaggagaccctggg
cttcctggttcaccaggacctcaagggaaagaaggacccattggctaccctggactagcg
ggttatggacctcctggaccaccagggaccaaaggagacaccggtgtacctggcctgcca
ggagtacctggaattccaggtcaaaaaggggaatctggtcattttcataccaaaggccca
ccaggaccacaaggatttcaaggaccgcctggcttagaaggaagtccaggtgttccagga
gtacctggtgtccctggaaatccaggcaaagcaggacaaaaaggagaaagaggggtcttg
attcttactggaaatccaggaccccaagggcagaaaggtgataaggggctggctggccct
ccaggtactccaggttggggttttcctgggcagtctggtcctccaggccctcctggtgcc
ccaggagaaaagggtgacagtggccatggacaccctggtcgtccaggtcctccgggacca
cctggtgaaaatggagctccagggccagctggcgatcctggaatccctggtcttccagga
agtcctggaataattggcaaatctgggcctccaggagaaaaaggaagaaaaggttctgtt
ggccctccagggcttcctggtaccaaagatttatgtatcggtttacctggaccaatagga
tttccaggagagaatggacatacaggacatataggggctaatggcttgcctggagagaaa
ggtaatgcgggtttacctggatttggttctcctggccttcaaggtggtcctggaccctct
ggtttgtcagttccgggtccacatgggactccggggcagaagggatctcggggtcgagat
ggctggcctggtgaacgaggacaaataggagaccgtgggcctgatggtatatctggacat
ggtccagatggaaaaccagggaatacaggacgacctggaccaagaggggacccgggccca
gacggagcaagaggccgacaaggaccccaaggcatggtgggagatccaggtgatagaggc
cctccaggacttccttgtccgacacgcatctacactgggcctccaggagatcccggagag
ccaggaaatcctggtttagctggtttcactggtgatcctggaagatctggaccaaaggga
cagagaggaagacctggaccacaaggggatctggggcagagaggtcctcctggggaacct
ggcgttgatggtcaagcggcatctgaagttaggcgaggaccagatggagccccgggagat
tctggtcataggggtcatcctgggctcaaaggagtgaagggagaccctggcattcccgga
aggccaggaccagatggtgttccaggtacaacaggcagcaaaggagctgctggagaacca
agctatgtgtacggaccacctggaccacctggacagaagggtgaaccagggtccaggagt
gatgtcatgctcaagggacagaaaggagaacctgggattgaaggacaagtaggtgttcca
ggaagccctggagccaaggggaacacaggacctgatggaaaaaatggttccccaggattt
ccaggcccagttggttctgatggtccccctggaataaaaggacacataggacctattgga
ctaccaggcattccaggcccaacaggccatactggggaacgtggtataaaaggaagccag
ggacttgatggtattcctgggccaccgggtcaaaaaggggacactgttataataggagga
gtacaaggaagacctggtgatccaggcccaccaggtcctcctggggatatcggtccacct
ggtttgttcggcagagggagtccaggaccagaaggagacaggggaattccaggtctacct
ggacgtcctggtgaatcaggactaccaggaagagaagggacttgtattccaggacctaaa
ggtgatggtggattccctggtaacccaggaaaccaaggccaccctggtccaccaggccct
caaggtctcgtagtatcagggttaaaaggagacagaggagagccagggttcccaggaagc
ccaggttttggtgggccctcaggaaatccaggacctcaaggaccatatggtccacctggt
gtacgtggattcccaggaccaggaggagaccctggtccttcagggagacatggccccctt
ggtgacagaggagatcctggatacagcccaggtccatgtggtccacgtgggcacaaaggt
tttcctggacgcccgggtcgcaaaggtgaaccgggctctgttgacaggatatacaaacca
ggacctcctggattacctggtcctaaaggcaatcaaggacttccaggagcaatggggcca
ccaggatcactaggaccgccaggactgcctggcgtcaaaggaccaggaggtgtgagccct
cctggtcctgctggattcactggccacaaaggagacaaaggaaacaccggattaccaggt
caagtaggcggaccaggaattcctggtcgaaaaggaccaagaggtttgccagggagagca
gctacacattacacagatggttttctgattgccaggcacagtcagagcattaaggtccct
gactgccctaatggcagcagcctcatctactctggttattccctcctcttcatcaacgga
aacgagcgagctcatggccaggaccttggcacaatgggaagctgcctccctcgtttctcc
accatgcccttcctgttctgcgatacagaaaatacctgccgctatgcttctcgtaatgac
tattcctactggctgtccactgataagctcatgcctgccaacatggttgccgtcacagct
gataaagttgccccctacatcagcaggtgctcagtttgtgaaacaacctccaaaatcata
gctttccatagccagaacactctgatacctgaatgtcccagaggttgggagaccctgtgg
actggttactcatttataatgcaaaccggagcaggagcagaaggatcctcccaacccttg
atgtctcctgggtcatgcatggaaaatttccgccgagtgccttttattgagtgtcacggc
agaggcacctgtaattactatcctgattcctacagctactggctagcctcccttgaccga
aacaacatatttagtaaaccggttccccggactgtgaaaggattttctctagagagagtc
atcagtcgttgtcgggtctgcagaaaatcctga
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integrated database retrieval system
