Xiphophorus couchianus (Monterrey platyfish): 114146144
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Entry
114146144 CDS
T05908
Name
(RefSeq) LOW QUALITY PROTEIN: nucleolar transcription factor 1-A-like
KO
K09273
upstream-binding transcription factor
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xco03000
]
114146144
03021 Transcription machinery [BR:
xco03021
]
114146144
Transcription factors [BR:
xco03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
UBF
114146144
Transcription machinery [BR:
xco03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
UBF
114146144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_5
HMG_box_2
DUF4473
HMG_WDHD1
VKGC_lumenal_dom
Motif
Other DBs
NCBI-GeneID:
114146144
NCBI-ProteinID:
XP_027875765
LinkDB
All DBs
Position
6:30830250..30838455
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AA seq
738 aa
AA seq
DB search
MGVCDCRASVTMNGSSSISAAQRIKAETDAWSQEDCLTLLERIRGLLPDGDAMKYKTTES
HFDWDKVGFGRFTGDMCRQKWQKVSSEVRKYRTMTELIVDAIEFVKNPYKGKKLKTHPDF
PKKPLTPYFRFFMEKRAKYAKIHPEMSNLDLTKILSKKYKELPDKKKQKYITEFQREKEE
FEKNMARFREEHPDLMEERKKSDLPEKPKTPQQLWYNHEKKAYMKLHPEVSQKELKEALR
RQWSQLSDKRRLKWISKALELQKDYEDSMRAYHEAHPDSNSEEHVRSVLTKAERQLKDKF
DGRPTKPPPNGYSLYCAELMVNMKDVPSTERMVLCSKQWKMLTQKEKDMFQKRCEQKKKQ
YDVDLQRFLESLPEEERDRVLTEEKMGGAKLNVGVVPSPLRAKSPSVKERGREAEPEAWP
AAAGGASAPRERRDARKTAKLPETPKTAEETWQHSVTGDYLAKYRSDRRKAQAAMEAAWR
SMEKKEKIPWIKKAAEDQKRYEVRYPPDPXPLRPDWLQCALTAAVLXRELLEMRAPPVGQ
RKPKFDGEPKKPPVSGYQMFSQELLTNGELNHFSLKERMVEIGKRWQKLSQAQKDKYKKQ
VEEQQVEYKAHLEAWVKSLSPQDRAVYKEFSSSKRRSSSSKATASPVAKVRVTAKGKVGG
ARAVTPGVTVGKRAMAYRAKQDMSDSDEEEEKSGSSDSDEDDETSGSSDSEDEDENDDDE
EEDDDQSSSEESSELDSD
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgtgtgattgcagagcctccgtcacgatgaacggcagcagcagcatctctgcg
gctcagaggatcaaggctgaaacagacgcatggagccaggaggactgcctgacgctgctg
gagcggatccgtggtctgctgcccgacggagacgccatgaagtacaaaaccaccgagtcg
cacttcgactgggacaaggttggcttcggccgcttcaccggggacatgtgccgccagaag
tggcagaaggtctcctccgaggtccggaagtaccggaccatgacggagctcattgtggac
gccattgagtttgtcaagaacccgtacaaaggcaagaagctgaagacccacccggacttc
cccaaaaagccgctgactccctacttccgcttcttcatggagaaacgggccaaatacgcc
aagatccatccggagatgagcaacctggacctcaccaagatcctgtccaagaagtacaag
gagctgccagataagaagaagcaaaagtacatcacagagttccagcgggagaaggaggag
tttgagaagaacatggcccggttcagggaggagcatccggacctgatggaggagaggaag
aagtcggacctgccggagaaacccaagacgccccagcagctgtggtacaaccacgagaag
aaggcctacatgaagctgcacccagaggtgagtcagaaggagctgaaggaggcgctgagg
aggcagtggtcccagctgtccgacaagcgcaggctgaagtggatcagcaaggcgctggag
ctgcagaaggactatgaggacagcatgagggcgtaccacgaggcccacccagactccaac
tcagaggaacacgtccgctctgtcctcaccaaggccgagagacagctgaaggacaagttc
gatggacggcccaccaagccgccgccgaacggttactccctgtactgcgctgagctgatg
gtcaacatgaaggacgtgccgagcaccgagcgcatggtgctgtgcagcaagcagtggaag
atgctgacccagaaggagaaggacatgttccagaagcgctgcgagcagaaaaagaagcag
tacgacgtggacctgcagcgcttcctggagagccttcctgaggaggagcgggaccgagtc
ctgacagaggagaaaatgggcggagccaagctgaatgtgggtgtggttcccagccctctc
agagccaagtctccatcggtcaaggagcgcggccgggaggcggagccagaggcgtggcca
gcagccgcaggcggagcctcggcgcccagagagcgacgggacgccaggaagacagcgaag
cttccagagacgccgaaaaccgccgaggagacgtggcagcacagcgtgacaggagattac
ctggccaagtaccggagtgaccgcaggaaggcgcaggcggcgatggaggcggcttggcgc
tccatggagaaaaaggagaaaattccctggatcaagaaagcagcagaggaccagaaacgt
tacgaggttcggtaccctcctgacccctgacctctgcgtcctgattggctgcagtgtgcg
ctaactgctgctgtcctctagagggagctgttggagatgagagcgccccctgtcggccag
aggaagcccaagttcgatggagagccaaagaagcctccagtgagcggctaccagatgttc
tcccaggagctgctgacgaacggagagctgaaccacttcagtctgaaggagcgcatggtg
gagatcggcaagcgctggcagaagctcagccaggcgcagaaggacaagtacaagaagcag
gtggaggagcagcaggtggagtacaaggcccacctggaggcctgggtcaagtcgctgtcc
ccacaggaccgcgccgtctacaaggagttctcctcctcgaaacgtcgcagcagctcctcc
aaagccaccgccagccccgtggccaaggtccgggtgacggcgaaggggaaggtgggcgga
gccagggctgtgaccccaggggtcaccgtggggaagagggccatggcatatcgcgccaag
caggacatgtctgactccgatgaggaggaggagaagagcggttcctcagactctgatgaa
gacgatgagacatcaggaagttcagacagcgaggatgaagatgagaacgatgacgatgaa
gaggaggatgacgaccaatcttcctcggaggaatccagcgagttggactcagattag
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