Xiphophorus couchianus (Monterrey platyfish): 114146183
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Entry
114146183 CDS
T05908
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114146183 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114146183 (ndc1)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
114146183 (ndc1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
UNC-79
Motif
Other DBs
NCBI-GeneID:
114146183
NCBI-ProteinID:
XP_027875836
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All DBs
Position
6:21422270..21432921
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AA seq
669 aa
AA seq
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MFPSETSCWFIRKVIWWRAAASIAWSVLLLPPTTAVFVFLSKFSFLHPIQTISECLSLLM
SSCLIFSFILLGGVVIMVGFLNLEYYTVIPTIACSKIALLGQLLHPRQVVNSLAHCLMGV
IVGWCCAVTVGNRYETLGCPCKNSDGVPQMGLNEYHLVFLLAGAFVGFSHSLLGVIHNIN
YVSFHAVQQYKYLHFKGSLPLVLKCSAIQAFYSIRNFTVAYFFLGYIPKTWICKTLNLHL
DSSVHRLDSITGFVDLSLLYHLWISATFLLFTWYITLLLFRIFVTEVYSFPVQPTFTEDS
YQCLPRVLIDQQPMILKFLALQDLALLSKHSPSRRGEVFSLSQPGGHAHNWNAVSRACLT
LLADLTQRLVAYHETVATNGRAKSLSSGSERKISSDTSFTSGTEDLFSPRPTFLTKTPTS
VFARSFAGGPHSPLTAPFTPDLDSPFSSPTLRRLTGPVDQCSPWHGSVQSPHIMRRVPKL
WSTSAESQVSSSPPRSPASVPSPKQESTKPSFLAQFLQNRKEQVKNFMAKRVLIMYLFNK
LPEASSQALFADSQAHIWALEALSYLVQASFTEDQFGVVQTTLPSMLSSMLHLQEAVDRH
FKLPHASSKPVRSANSMEDFTYKTLRFALRATLKTAIYRITTTFGSHLNAVQMSAEHRKR
LQQFLEFKE
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtttccttcagaaacaagctgctggtttatccgcaaggtcatttggtggagagctgct
gccagcattgcctggtctgtcctgttgttgccgcccaccacggcagtttttgtgtttctc
agcaagttcagttttcttcaccccattcagactatttcagaatgcctgtctctgctgatg
agttcctgtttgattttctccttcatcctgcttggtggagtggtcatcatggttgggttc
ttgaatttagagtactatacagttatcccgactattgcctgctctaaaattgcattgctg
ggtcagctgcttcaccctcgccaggttgtcaactcccttgcccactgcctgatgggagtg
attgtaggttggtgttgtgcagtcactgttggtaacagatatgagacacttgggtgcccg
tgtaaaaatagcgatggtgttcctcagatggggctcaatgagtaccaccttgtctttttg
cttgctggagcatttgttggtttctctcacagcctcctgggagttatccataacataaat
tatgtttccttccatgctgttcagcaatacaaatatctccacttcaaagggtccctgccg
ttagtgctgaagtgcagcgccattcaagcattttactctatcaggaacttcactgttgct
tatttctttctgggttatatcccaaaaacatggatctgcaaaactctgaatcttcatttg
gacagctctgtccatcgtctggacagcataactggatttgtggacctgtccctcctctac
cacctctggatcagcgccaccttcctcctcttcacctggtacatcacattgctgctcttt
aggatctttgtcacagaggtgtacagttttcctgtgcaaccaacttttactgaagattct
taccagtgtcttcccagagttctcattgaccaacaaccaatgatcttgaagttcctagcc
ctgcaggacttggctctgctgtccaaacattctccatccagacgcggtgaagtcttcagt
ctcagccaaccaggtgggcatgctcataactggaacgctgtcagtagagcgtgtctgact
ctgctagctgatctgacgcagagacttgtggcttatcatgaaaccgtagcaaccaatggg
agggctaaatctctgtccagtggcagtgaaaggaagatttcatctgacacatcatttacc
tctggtacagaagacctgtttagcccaagaccaactttcctaaccaagactcctacttca
gtttttgcccgctcttttgccggaggtccacacagccctctgacggcaccgttcacgccc
gacctggacagccccttttcctcacccaccttgcggcggctcactggtccggtggatcag
tgctcgccgtggcacggctcggtgcagagcccacacatcatgaggcgggtgcccaaactc
tggtccacctccgcagagtcacaggtcagcagcagcccaccacgctctccagcctcggtt
cccagtcccaaacaggaatccaccaaaccaagttttctggcccagttccttcaaaacaga
aaagaacaggttaaaaatttcatggcaaagcgggtgctgataatgtatttgtttaacaag
cttccagaagcctctagtcaggccctcttcgccgacagccaggctcacatctgggcgtta
gaagcgctgtcatacctggttcaggcctccttcacagaggaccagtttggggttgttcag
actacattacccagcatgctcagctccatgctgcacttacaagaggctgtggatcgacac
tttaagctgcctcatgcttccagtaagccggtcagatccgccaacagcatggaggacttt
acctacaaaacactgcgctttgctcttagagccacgctcaagactgccatttacaggata
accaccacctttggaagtcatttaaatgctgtccagatgtctgcagagcaccgaaaaaga
ctgcagcagtttctggagtttaaagagtaa
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