Xiphophorus couchianus (Monterrey platyfish): 114146436
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Entry
114146436 CDS
T05908
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
114146436 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xco01009
]
114146436 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114146436 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
xco03029
]
114146436 (rb1cc1)
Protein phosphatases and associated proteins [BR:
xco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
114146436 (rb1cc1)
Membrane trafficking [BR:
xco04131
]
Autophagy
Autophagosome formation proteins
ULK complex
114146436 (rb1cc1)
Mitochondrial biogenesis [BR:
xco03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
114146436 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
114146436
NCBI-ProteinID:
XP_027876259
LinkDB
All DBs
Position
6:complement(17322906..17339075)
Genome browser
AA seq
1616 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTDLAVQTVLELKHAIQAKYKIAVQHQVLVVNGGECMAADRRVC
SYSAGTETNPIFLFNKEMILSDRDPTIPKTTFSIESEIQVKVEESLLMPAVFHTVASRTQ
LALEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLEDCTLSYQKLLMKFNTAYTNYQQ
DLEEIKIKLSKLGTSVSVMARIPLLECLTRHSYRESIEKSSSTPEKDSDETEEEKSTDSV
LCATQTQVASKSSASLSASGTATCEPEGDQETSEMTESDGLRAALLDDDTPELSCQSSFN
VTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLADCRDTIAKLDNQNMKSIKGL
EDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHTNQLMIMLN
NHRKLLDIKKKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELIERVRV
VDALSTVPQMYCLAVVEVVRRKMFMRHYREWANALVKDGKRLYEAEKFKRESFGKLFRKS
FLRNRLFRGLESWPPTSFCTRKPRKFDDELPDISLDDLQYLKSCCPVEVQPFLMIPAMCD
FEPLNRHVETLHKLVRAAQSVDEMSQTITDLLSEQRTSYSQSAQRSTAQTPQSEGKNGTT
TPVLSKMPLCLSLQGSSCQPLLVPVPAPLEDLSPDSIDAQTFDFETIGHPNMDPVLQQGS
LDLDSLAESPESDFMSAVNEFVIEENLTSPNPISDPTSPEMMVESLYSSVINAIDNKRMQ
DTTTLEKENSRIADLKEVLEKYRCAAEESHSNLRRVKADLYYLRGFVLKEQQDFGLALRS
ITMEVRSTVNKIYQCHKMELNEQHEGELLSARQELEKQVQALTEENQVNQNIVRDVQRAM
LELEGLMERKEKELTQLENEKERWVEKERNFAEKIKNLEQINCDQTEEIKALQTSKDSLS
SQLENLHFEIERSQQKIRQELEVVSQCHLKELEEKLKQEHQKDLDSLNKNNKEALEHLAV
ENSTKLTKAADHHDTAIKEKDVHIKEMEARLTELTELRCRLEVDLALKESEMEEVRILFE
EAKMQQAEAVKTQVEADTKVLKDELMDLKRQLQAKNEEYEVDLAELRTLMRIEKDHCISE
LVDRQEEQTILLHGKISALQQHSQDVERNHAEQQQRLREELDQQRAALAEDEEKQFRSFQ
DREQQLRTVINNLQAEHDLLSKNLEQERRAAQEQEASNVVAANAFKELEQQKEEMERRLL
EKIRQLENELHEKQSSKSDEGLSLHAEGHADAGAPLSLDSALQERLQQERASLQAQIELL
EKKKNEEIQNLKTSLIAEQQTNFNTVLTREKLKKEQIINDLSEKLQKVTQQQEKDKGLIE
TLSEDRASVMQEKKQLEEELNRLRNSALVSSAFFPSNSAQDLSEAGAAARALPVTGACSP
ETSAETDRLASVTAFRDDEHVESAVEASMVASDDTVMSEEKQRIMLLERTLHMKEEENKR
LSQRLMSQSMSSVSSRHSDKIAIRDFQVGDLVLIILDERHDNYVLFTVGPTLYFLHSESL
TALDLKPASGTSRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNRKV
NT seq
4851 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgtatgtgttccaggtcaacaatggaagcacattgacttttgacactgacctt
gctgtccaaactgtattagagcttaaacatgccatccaagccaaatacaaaatcgcagtc
cagcatcaggtcctcgttgtcaatgggggggaatgtatggctgcagacagacgggtctgc
agttacagtgctggcactgaaaccaaccccatatttctgttcaacaaagagatgatctta
tccgaccgggatccaaccatcccaaaaaccaccttttccattgagagtgagattcaggtt
aaggtggaagagtcgctactgatgccagctgtctttcacaccgttgcctcacgaacacaa
cttgctctggaaatgttcgaagttgccaaaaaactttgctcgttctgtgaacgtttggtt
cacgatgagcatctccaacatcaaggctgggcagctatcatggctaatctggaggactgc
actttgtcttatcagaagttactcatgaagttcaacaccgcatacacaaattatcaacag
gacttggaagaaattaaaatcaaactttcaaagttagggacttcagtttctgtgatggcc
agaattcctctgctcgaatgtttgacaagacacagttacagagagagcatcgagaagtcc
agttcaaccccggagaaggattcagatgagacagaagaagaaaaatccaccgactctgtg
ctctgcgctactcaaacccaggtggcctctaaatcgtcagcgtccttatctgcttcaggg
acagccacatgtgagccagagggagatcaggagacaagcgaaatgactgagagtgatggt
ttgagagctgcacttttagatgatgacactccagaactctcctgccagtcttcttttaat
gtaacactattggactggattaacgtgcaagacaggcctaacgatgtggaatcggttgtc
aggaaatgctttgactccatcaacaggcttgaccctcggatcatccagcctttcctggca
gattgtcgtgacacaattgcaaagctagataatcagaacatgaaatccatcaaagggctt
gaagacaggctgtacgctctagaccaaatgattgcaagctgtaagaagctggtgaatgag
cagaaagaacttgctcaggggtttttggccaatcagaaacgagctgaaaacctaaaggat
acatccgtcttgcctgatctgtgtctgagtcacaccaaccagctgatgatcatgctgaac
aaccacaggaagctgctagacatcaaaaagaagtgcaccactgccaaacaagagctagca
aacaaccttcaagtcagactcaaatggtgctgctacgtgatgcttcacgcagatcaggat
ggggagaagcttcaggctcttcttcggctcctgacagagctaatagagagagtgagggtg
gtggacgccctcagtacggtgccccagatgtactgcttggcagtggtggaagttgtgagg
agaaaaatgtttatgcgacactacagagagtgggccaatgctcttgttaaggacgggaag
cgactgtatgaggcagaaaagttcaaaagggaatcctttggaaaactcttcaggaagtct
tttctccgaaatcgattgtttagaggacttgagtcttggcctccaacttcattttgtacg
cggaaacccagaaagtttgatgatgaacttccagatatctcacttgatgacctgcagtac
ttgaaatcgtgttgtcctgttgaggtgcagcctttcctaatgattcccgccatgtgtgac
tttgagcccctaaatcgccatgtagagacacttcataagctggtccgagccgcacagagc
gtggacgaaatgtctcaaactatcacagacctgctgagtgaacaaagaacatcctatagt
cagagcgcccaaagatcaacggcacaaactccgcagtctgagggcaagaatgggaccacc
acgccggtgctctccaaaatgcctctctgtcttagccttcagggatccagctgtcagccc
ctgcttgtacccgtcccagctcctttagaggatctgtccccagacagcatcgatgcacaa
acatttgacttcgaaaccatcggccacccgaacatggaccctgtcctgcagcagggatcc
ctggacttggattctctcgccgaaagccccgaatctgacttcatgtctgctgtcaacgag
tttgtgatcgaggagaacctgacctccccgaaccccatcagtgaccccactagccccgaa
atgatggtggagtcgctctactcctcagtcattaacgccatcgacaacaagcggatgcag
gacaccacaacgctggagaaggaaaactcaaggattgccgacctcaaggaagttctggag
aaatacagatgtgctgcagaagagtcccactccaacctaaggagagtgaaggctgacctc
tattacttaagaggttttgtcttgaaggaacagcaggactttgggttagctctgcgcagc
ataaccatggaagtgcgcagtactgtgaacaaaatctaccagtgtcacaaaatggagttg
aacgagcagcatgaaggagagcttctcagcgctcggcaggagctggagaagcaggttcag
gcgttgacggaagaaaatcaagtaaaccagaatattgtcagagatgtccaacgagcgatg
ctagagctggaggggctcatggagcgcaaagagaaagaacttacccagctggagaatgag
aaagagcgatgggtggaaaaagagagaaactttgctgaaaagataaaaaatcttgagcag
atcaactgtgatcaaacagaagaaatcaaggcgctccaaacttcaaaagactctttgagc
agtcagcttgaaaacctacattttgagatcgaacgcagtcagcagaagatccgacaggag
ctcgaggtggtttctcagtgccatttaaaggagttggaggaaaaactgaagcaggaacac
caaaaggatctggatagtctgaataagaacaacaaggaggctctggaacatcttgctgtt
gaaaatagtacaaagctaaccaaggcagcagatcaccacgataccgctattaaagagaag
gatgttcacattaaagaaatggaagctcggcttacggagctcacagaactccgctgtaga
ctagaggtagacctggccctcaaagagtccgagatggaggaggtgagaatcttatttgaa
gaagctaagatgcagcaggcggaagctgtaaagacccaagtggaggcagacaccaaagtc
cttaaagatgagctgatggatctcaagaggcagcttcaagctaagaacgaggagtatgaa
gtggatctggcagagctgaggactctcatgaggatcgaaaaggaccactgcatctcggag
ctggtggaccggcaagaggagcagacgatcctgttgcacggcaaaatctccgccctgcag
cagcactcccaggatgtggagagaaaccacgcggagcagcagcagaggcttagagaagag
ttggatcagcagcgggcggctctggctgaagacgaagaaaagcagtttaggagtttccag
gatcgggagcagcagttgaggacagttatcaacaatttgcaggcagaacatgatctgctc
tctaaaaacctagagcaggaaagacgtgcagctcaggagcaggaagcctcgaacgtcgta
gcagcaaatgcttttaaggagttagagcagcagaaggaggagatggagagaagactttta
gaaaagattaggcaacttgagaatgagcttcatgagaaacagtcaagtaaaagcgatgaa
ggcttgtcgctgcatgctgagggccatgcagatgctggagcacctctgtccctagactca
gccttacaggagcgcctgcagcaggagagggcctctctgcaggcccagattgagctcttg
gagaagaagaagaatgaagagatacagaacctcaaaacatcactgattgcagagcagcag
acgaacttcaacactgttctaacaagagagaagttgaagaaagagcagattatcaacgac
ctttcggagaagttacaaaaagttacccagcagcaggaaaaagacaaaggtctgatagaa
acgctgtctgaggaccgagcgagtgtgatgcaggagaaaaagcaattggaggaagagctg
aaccgtctgcgcaactctgctctggtctcctcagccttcttcccctcgaactcggctcaa
gatctctcagaagctggagcagcagcgagggctctgcctgttacgggggcttgctctcct
gagacctcggctgaaacggaccgactggcctccgtaacggccttcagagatgacgagcac
gtcgagtcagctgtggaagccagcatggtggcttctgatgacaccgtgatgtcagaagag
aaacagcggataatgttacttgagaggactttgcacatgaaggaagaagaaaacaagcgc
ctcagccagcgactgatgtctcaaagcatgtcctccgtgtcatcacggcattcagacaaa
attgccatcagagatttccaggtcggcgatttggttctaatcatcctggatgaaaggcat
gacaactacgtgctgttcacagttggtcccaccctctacttcctgcactcagagtctctc
actgcactggaccttaaaccagcatcagggacctcaagacggccatgggtgcttggaaaa
gtgatggagaaggaatattgtcaggcaaagaaggcccagaacagattcaaagttccttta
ggaaccaagttctacagagtgaaagctgttccatggaatagaaaagtctaa
DBGET
integrated database retrieval system
