KEGG   Xiphophorus couchianus (Monterrey platyfish): 114146587
Entry
114146587         CDS       T05908                                 
Symbol
copa
Name
(RefSeq) coatomer subunit alpha
  KO
K05236  coatomer subunit alpha
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:xco00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xco04131]
    114146587 (copa)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:xco04147]
    114146587 (copa)
Membrane trafficking [BR:xco04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    114146587 (copa)
Exosome [BR:xco04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   114146587 (copa)
  Exosomal proteins of bladder cancer cells
   114146587 (copa)
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd WDR55 TPR_COPA_B Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st EIF3I WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_RFWD3 ANAPC4_WD40 WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_Aladin Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 114146587
NCBI-ProteinID: XP_027876609
LinkDB
Position
6:23938457..23955923
AA seq 1222 aa
MLTKFETKSARVKGLSFHPKRPWVLASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVETD
VRGITGVDLFGASDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADAVTLFDVQQK
RSLATVKIAKVKYVVWSSDTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLTIDPTEYRFK
LALVNRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM
KIAEIRKDMSGHYQAALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAEALKETFDP
EKETVPEVDPNAQLLQPPPPINPLDTNWPLLTVSKGFFEGAIAAKGKAVQMAADLDMEAA
GGEGWGDDAELTMDEDGFIDAQDGLGDEGLGKEEGGGWDIDEEVELPPELDVPLGAGGST
EDGFFVPPTKGMSPAQMWCNNSQLPVDHILAGSFETSMRLLHDQVGVVNFAPYKSLFMQT
LSRGRTSYLGLPSLPCLRGHPQRNWKDCGAKQGLPAVGLRLSDLISRLQQCYQLTTAGRF
EEAVERFRAILLSVPLLVVDNKQEIAEAQQLITICREYIVGLTMEVERKKLPKETLDQQK
RLCEMAAYFTHCNLQPVHMVLVLRTALNLFFKLRNFKTAAGFARRLLELGPKPDVAQQTR
KILAACEKTLTDTHQLNYDPHNPFDLCAASFVPLYRGRPVEKCPLSGACYCPPYKGQICR
VTQVTEIGKDVIGLRVSPLQFR
NT seq 3669 nt   +upstreamnt  +downstreamnt
atgctaacaaaatttgaaaccaagtctgcgcgtgtgaaaggtctgagttttcatccaaaa
aggccatgggttcttgcaagtttgcacaatggtgtcatccagctgtgggactatcggatg
tgcacactgatcgataaatttgatgaacatgatggtcctgtcagaggaattgatttccac
aagcagcagcctctttttgtgtctggaggagatgactacaaaatcaaggtgtggaactac
aagctgagacgctgtctttttacccttttgggacacctggactacatcagaactacgttc
tttcaccatgaatatccatggattctgagtgcctcagatgatcagaccatccgcatctgg
aactggcagtcgaggacctgtgtatgcgtcctgacgggacacaaccactacgtgatgtgt
gcccagttccacccatcagaagacttggtggtgtccgccagtctggaccagacagtgcga
gtgtgggatatctccggtttgaggaagaagaacctgtctccgggtgccgtggagacggac
gtgcgcggcatcaccggggttgacctttttggtgcctccgatgcggttgtgaaacacgtc
ctggagggacacgaccgtggggtcaactgggctgctttccatcccaccatgccgctcatc
gtgtctggagccgacgacaggcaggtcaagatctggagaatgaacgagtccaaggcgtgg
gaactcgatacatgccgcggccactacaacaacgtttcctgcgccgttttccatccgcgc
caggagctcatcctgtccaactcggaggacaagagcatccgggtgtgggacatgtccaag
cggaccggagttcagacctttcgccgtgatcacgatcgcttctgggtgctgggagcccac
ccaaaccttaacctgtttgcagctggtcatgacagcggtatgatcgtcttcaagctggaa
cgggaacgtcctgcttacgctgtgcatggcaacatgctgtactacgtcaaagatcgcttc
ctccgccagctggacttcaacagcagcaaggacactgctgtcatgcagctccgcagtggt
tctaagtttccggtgttcagcatgtcgtataatcctgctgagaacgctgtcctgctctgt
acaagagcgaccaacctggagaacagtacatacgacctctactcaattcccaaagaaagc
gactcccagaaccctgacgcaccagagggaaaacgatcatctggcctgactgcggtgtgg
gtggcaagaaaccgatttgcagtccttgatcggatgcactctcttctgattaaaaacctg
aaaaatgaaatagtgaagaaggtccaggtgccaagctgcgaggaaatcttctacgcagga
accggctcgctgctgctgcgcgacgccgacgccgtcacgctgttcgacgtgcagcagaaa
cgctctctggccacggtgaaaatcgccaaggtcaagtatgtggtgtggagctccgacact
tcccacgtggctctgctggcaaaacatgctattatgatctgcaaccgtaagctggagagt
ctctgcaacattcatgagaacatcagagtgaagagtggagcctgggatgagagcggcgtc
ttcatttataccacctccaaccacatcaaatacgccctaacttcaggtgatcatggcatc
atccggaccctggacctgcccatttatgtgacccgggtcagaggcaacagtgtttactgt
ctggacagggagtgcaggcctcgcgttctcaccatcgacccgactgagtaccgcttcaag
ttggctctggtcaatcgaaaatatgatgaggtgctccacatggtgcgaaatgccaaactg
gtgggtcagtcgatcattgcctaccttcagaaaaagggctaccctgaggtggcgctccat
tttgtgaaagacgagaagactcgtttcagccttgctctggaatgcggaaacattgaggtg
gcgctggaggcagccaaggccctggatgagcgcagctgctgggagcgtctgggcgaggcg
gcgctgctgcagggacaccaccaggttgttgagatgtgctaccagaggaccaagaacttc
gacaagctcaccttcctctacctcatcactggtaatctggccaagctgcgcaagatgatg
aagattgctgagatcagaaaggacatgagcggtcactaccaggcggctctgtatctgggg
gatgtcagtgagagagtccgaatcctgaagaactgcggacagaagtctctggcttacctc
actgcagccactcatgggctggatgaagaggctgaggcactgaaggagacctttgaccca
gaaaaggagactgtgccagaggtcgaccctaatgcacagctgctgcagccgccgcctccc
atcaaccccctggacaccaactggcccctgctcactgtatccaagggcttctttgaggga
gccattgcagcaaagggtaaagcagttcagatggctgcggatttggacatggaggcagct
ggaggcgagggctggggagacgatgctgagctcaccatggatgaagacggcttcattgat
gcccaggatggattaggagatgagggattggggaaagaggaaggaggaggctgggatatt
gacgaagaagtggaacttcctccagagctggacgttcctctgggagcaggagggtcaaca
gaagatggattctttgtgccgccaaccaagggcatgagtccagcccaaatgtggtgcaac
aactcacagctgccagtcgaccacatcctggctggatcctttgaaacctctatgagactg
ctccacgaccaggttggagttgtgaactttgccccctacaagtcgctgttcatgcagact
ctgtctagaggtcgaacctcttacctggggctgccgtctctaccttgtctgcgcggtcac
cctcagaggaactggaaggactgtggggcgaagcagggactgcctgctgtggggctgcgc
ctctccgacctgatctctcgcctccagcagtgctaccagttgaccacggctgggaggttc
gaggaagccgtcgagcgcttcagagccatcttgctttctgttcctctgctggtggtcgat
aacaagcaggagatcgcagaggctcagcagctcatcacaatatgcagagagtacatcgtg
ggtctgaccatggaagttgagaggaagaagttgcctaaagaaactttggatcaacagaag
aggctttgtgagatggctgcatatttcacccactgcaacctgcagccggtccacatggtt
ctggtgctgcgcacagctctgaatctcttctttaaactccgcaactttaaaacagctgca
ggatttgcgcggcgcctcctggagctcggcccgaagccagatgttgcacagcagacccgt
aaaatcctggcggcttgtgagaaaaccctgaccgacacccatcagctgaactacgacccc
cacaatccgtttgatctgtgcgctgcctcctttgttcctctgtaccgaggacgtcccgtt
gagaagtgccccctctctggagcctgctactgccctccgtacaaaggccagatctgcagg
gtcactcaggtgacggagattggcaaggatgtgatcggtctgcgtgtgagcccactccag
ttccgctaa

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