Xiphophorus couchianus (Monterrey platyfish): 114146757
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Entry
114146757 CDS
T05908
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
xco04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114146757
04518 Integrin signaling
114146757
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114146757
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xco00536
]
114146757
Glycosaminoglycan binding proteins [BR:
xco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114146757
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
114146757
NCBI-ProteinID:
XP_027876887
LinkDB
All DBs
Position
1:22290788..22315901
Genome browser
AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLAVVRCQEEDDQEAGGCIQDARVYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPIITSGECCPICPADASAPIEAFGAKGQKGEPGEIADVVG
PRGPPGPMGPPGEQGTRGETGAKGDKGNPGPRGRDGEPGTPGNPGPHGPPGPPGPPGLGG
NFAAQMAAGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGETGEPGPAG
SIGPRGPPGPSGKPGSDGDPGKPGKSGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDG
AKGETGAAGAKGEGGAAGESGSNGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPPG
PVGPAGAPGFPGSPGAKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGAGGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGLKGESGPKGELGPAG
PQGAPGPAGEEGKRGARGEPGTAGPNGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPG
AAGPKGATGDPGRTGEAGLPGARGLTGRPGDAGPQGKVGASGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEPGKPGEKGLVGRSGVRGLPGKDGETGPSGPSGPAGPAGERGEQG
QPGPPGFQGLPGPTGSPGEGGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGAGSQGLQG
PRGLPGTPGSDGPKGAIGPAGALGGQGPPGLQGMPGERGAGGIPGAKGDRGDNGQKGPEG
APGKDGGRGLTGPIGPPGPSGPNGAKGETGPTGPSGAPGVRGAPGDRGELGPPGPAGFAG
PPGADGQPGAKGELGESGQKGEAGASGPQGSSGAPGPVGPTGVSGPKGARGAQGAPGATG
FPGAAGRVGPPGPNGNPGGAGPAGPAGKDGPKGVRGDAGPPGRPGDAGLRGPPGASGEKG
EPGENGPPGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGAGDRG
PPGPVGPPGLTGPAGESGREGTPGSDGPPGRDGSAGVKGERGNTGPAGAPGAPGAPGAPG
PVGPLGKQGDRGEAGTQGPAGPPGLAGARGIAGPQGPRGDKGEAGESGERGQKGHRGFTG
LQGLPGPPGPAGDSGSAGPAGPSGAKGPPGPLGPAGKDGSNGQPGPIGPPGPRGRSGETG
SAGPPGNPGPPGPPGPPGPGIDISAFAGLGQTEKSPDPLRYMRADEASSSLRQHDIEVDS
TIKSLNTQIENLRNPDGTQKNPARSCHDLKLCHPEWKSGDYWVDPNLGSTADAIKVFCNM
ETGETCVYPSITKVPKKNWWTSKSKDRKHIWFGETMNGGFHFSYAQDGLAASAANVQLTF
LRLLSTEASQNFTYHCKNSIAYMDQASGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDG
CKSHTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatctcaagttgtttta
ctagccgtggtcagatgtcaggaagaagatgaccaggaggcaggtggctgcatccaggac
gcccgggtgtataatgataaggatgtgtggaagccagagccgtgccgcatctgtgtgtgt
gacagcggagcggttctgtgcgatgagataatctgcgaggagatcaaagagtgtgccaac
cctatcatcacatctggagaatgctgccccatctgccccgctgatgcctctgcccccatt
gaggcgtttggtgctaagggccagaagggagaaccaggagagattgcagatgtcgtagga
cctagaggaccaccaggccccatgggccccccaggtgagcaggggacgcgtggagaaact
ggcgcaaagggtgacaagggaaatcctggaccaagaggaagagatggcgaacctggcaca
cctggaaaccccggaccccacggcccacctggaccacccggcccaccagggctgggaggg
aactttgctgctcagatggctgcaggctttgatgaaaaggctggaggtgctcagatgggt
gtgatgcaaggaccaatgggtcccatgggtccccgtggcccccctggacctagcggagct
cctgggcctcagggtttccaaggagcacccggagagactggagagcccggtccagctgga
tcgattggacctcgtggaccacctgggccatctggaaaaccaggaagtgacggtgatcct
ggaaaacctgggaaatccggtgagcgcggacctgccgggcctcagggagctcgtggattc
cctgggacacctggacttcctggaatcaaaggacacagaggtcaccctggtctggatgga
gcaaagggagagactggtgctgctggagccaagggtgagggtggtgctgctggagaaagc
ggcagtaatggaccgatgggccctcggggtctacctggtgagaggggacgtcctggtgct
tctggagctgcaggagcccggggaaacgatggcttgcctggtccagctggtcccccgggc
ccagttggtcctgcaggagctcccggtttcccaggatccccaggcgccaagggtgaagca
ggtcctactggcgcccgtggagctgaaggagcacagggaccccgcggagaggccggcaca
ccaggatcacctggaccagctggggcggggggtaaccccggcactgatggtattcctggg
gctaaaggttctgctggggctcctggcattgctggcgcacctggcttccccggcccccga
ggcccacctggaccacagggagcaactggacctcttgggcccaaaggacaatctggagat
cctggtcttccaggactgaagggtgaatctggaccaaaaggagagctgggccccgctggg
cctcaaggggctcctggccctgctggagaagaagggaagcggggcgcgaggggagagccg
ggaactgctgggccaaacggacctccaggagaaagaggagctcctggtaaccgtggtttc
ccgggtcaggatggtcttgctggtgcaaagggagcccctggtgaccgtggcgtccctggt
gctgctgggccaaaaggtgccactggagaccctggacgtacaggcgaggccggcctgcca
ggagccagaggtcttactggtcgtcctggagatgctgggccgcagggcaaagttggagct
tctggcgctccaggtgaggacgggcgacccggtccacctggtccccagggcgcacgcgga
cagccgggtgtcatgggattccctggaccaaaaggagcaaatggtgaacctggaaaacca
ggagagaagggactcgttggtcgatctggtgtgagaggactacctggaaaagatggtgag
actggtccttctggaccttctggacccgctgggcctgctggagagagaggagagcaagga
cagcctggtcctcctggcttccagggtctgcctggcccaactggttccccaggagagggc
ggaaaacctggagatcagggtgttcctggagagggtggagctcctggtgctgttggaccc
agaggtgagcgtggtttccctggtgagcgcggtggcgctgggtctcagggtcttcaagga
ccgcgtggacttcctggaacaccaggaagtgacggacccaagggagcaattggaccagct
ggagctcttggaggtcaaggacccccaggcctgcagggtatgcctggagagagaggagct
ggaggcatcccaggagccaagggagacagaggtgataatggacagaaggggcctgaaggc
gctcctggaaaagacggtggtagaggtttgactggtcccattggtcctcctggcccatct
ggacccaacggtgccaagggtgagactggaccaactggtccttctggtgctcctggggtt
cgtggtgctcctggtgaccgcggtgagcttggtcctcctgggcctgcgggcttcgctgga
cctcctggtgcagatggtcagccaggtgctaagggagagctcggtgagtccggacagaaa
ggagaggctggtgcttctggacctcagggatcctccggagctcctgggcctgtgggacct
actggcgtatctggacctaagggagcacgcggtgcccagggagctcctggagcaacaggt
ttccctggtgctgctggcagagttggacctcctggtcccaatggtaaccctggcggtgcc
ggtcctgctggtcccgctggtaaggacggtccgaaaggtgttcgcggtgacgccggtcct
ccaggacggccaggagacgctgggcttcgtggaccacctggagcttccggagagaaggga
gagcctggagagaatggacctcctggagctgatggcccttcaggtccgcagggtttggct
ggaagtcgtggtattgttgggttgcctggtcagcgcggtgagagaggtttccctgggctc
cctggaccttctggagagcctggtaaacagggagcatctggtggtgctggtgaccgagga
ccgcctggacccgttgggcctcctggactcactggacctgctggagagtcaggcagagag
ggtacgcctgggtcagatggacctcctggtagagatggatctgctggagtcaagggagag
cgaggtaacaccggtcctgcaggcgctcccggagctccaggcgcccctggggctcccggg
ccagttggacccctcggcaaacagggagacagaggagaggctggcactcaaggacctgca
ggacctccaggactggctggcgctagaggaattgctggaccccaaggaccacgtggagat
aagggggaggcgggtgagtctggagagagaggtcagaagggtcaccgtggcttcaccggt
ctgcagggtcttcctggacctccaggtcccgctggagattccgggtctgctggacctgct
ggaccaagcggcgccaagggaccccctggtccacttggacctgctggcaaagacggatcc
aatggacagcctggtcccattggaccccccggacctcgaggacgctctggagaaactggt
tctgctggtcctcctgggaaccccgggccccctggtcctcctggcccaccaggtccaggc
attgacatctccgctttcgctggcctgggccagactgagaagtctcccgatcctctcagg
tacatgagggctgacgaggcctccagctccctgaggcagcatgacattgaggtcgattcc
acaatcaagtccctcaacacccagattgagaacttgcgcaaccctgacggcacccagaag
aacccggctcgctcttgccatgacctaaagctgtgccaccctgagtggaagagcggtgac
tattgggtggatcctaacctcggaagtacagccgacgcaatcaaggtcttctgcaacatg
gagacaggagagacctgcgtctacccaagcatcacaaaagtaccaaagaagaactggtgg
accagcaagagcaaggaccgcaaacacatctggttcggagagacaatgaatggcggcttc
cacttcagctatgctcaggacggtcttgctgccagcgctgccaacgtccagctgaccttc
ttgaggcttctgtccactgaagcgtcccagaactttacttatcactgcaagaacagcatt
gcctacatggatcaggcctcaggaaacctgaagaaggcgttgctactgcagggctccaac
gacgtggagatccgcgccgagggcaacagtcgcttcacatacagcgtgttggaggatggc
tgcaagagtcacacaggccggtggggcaagactgtctttgaatacaaaacacagaaaacc
tcccgtctgccaattgtagacattgctccaatggacatcggaggagcagatcaagaattc
ggagtggatataggcgccgtctgcttcttgtaa
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integrated database retrieval system
