Xiphophorus couchianus (Monterrey platyfish): 114147983
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Entry
114147983 CDS
T05908
Symbol
col20a1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
FN3_Tor_3rd
VWA_2
NDNF
DUF4959
YjeF_N
Motif
Other DBs
NCBI-GeneID:
114147983
NCBI-ProteinID:
XP_027879058
LinkDB
All DBs
Position
1:4241522..4295512
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AA seq
1566 aa
AA seq
DB search
MSSHLLASRPSSLRPMLCFLLSVFLLLSSGVHGQGRLKLTVLSEDRLQMKWKEADGPVQG
YKVRVRTMSEEQQPELMLTTTRGRATVAGLDSSQEYSLQVFVLNGTTEKLLAKRRFTLEG
LREEEMIRSGSRENRRKLIPGGSASGDLDDSTAVLLDLPTVLFPEPTLTTAATVSTAEPS
ATESASEYPDEPPEKTTREKRKRKKEKEQHSSTVENKEEHGMKQGFPQRKPYECESDTAA
DIMLLVDGSWSIGRTNFRRVRDFLEGLVTPFNIGPNHIQIGLTQYSGDPRTEWHLGNFTT
KEQLLEAVRNFRYKGGNTFTGQALLHVMEENMKPKAGARASAPFFLVLLTDGKSQDDAIA
AANRLKNAGVEIIAVGVKNADEAELRQVASEPVDLNVYNVNDFPLLSKLVARLVHILCRR
IEDRGISKRMEPAPTTQPGLSFPSPTDLRFSQLGSRQVKLHWTNPAQPVQQYRVVYHSAE
SQSPQEVVLSGSESTVLLDGLSSQTLYHISIFPVYTSSIGLALRGTVTTLPLAMPTDLEV
TPSSYSTLQVSWSPAPGATHYMILYSALSDGEPEDAKEEKFSAGQTVVELAGLLPETDYS
VTLYALYDEEPSDPVTSVSRTLPLPAPVGIHFPIVTHSMIKVSWVSGAVDVPGHRITYST
NHGSDTKQMEVKGQNSVVLQSLSSLSRYLVSVQSHYPQGLSATLTSNVTTLKVPSPSDLK
VTNFSGSEIMVRWAAAADDVVYYLIKWISLSEGDLRQLKVNGDNEGTILEGVEEDKEYQI
SLSALYGDGAQSEAVAIRYSTLSGGGPSSVSVSEETAVSMLVNWVPPNAHVLQYRVSYTP
LTGAETQDGTVLVPGGHKQVVLESLQPDTRYSILVTAEYRNREGGSGSAQGKTASLRVSS
ISVVRSDHSSVCLSWRPVLAVDGYRVVIQSVKDKQIKQETVSESTNSYCFNHLEPETLYR
ISVHSLLGSAEGAAVSILHPTAPAPARIPIPPRIYPVHNEVCPEVTIQNGIVKGFNMMEA
FGLTRKAHSSVEGVSAEPFVFNNLPAYTVYRDVQLTQSTKFIHPAGFSPEHTISITFRLL
QDTLMEAFALWQLTDNDFQPKMGVVIDPSSQLLMYFSLDYRGEVQELTFDQPQVHKIFYG
SFHKVHLSVSQVSVSLSVDCQPVGERPARPLGNLPTDGFEMLGKLVKTRGPKSGSAPFQL
QSFEIICNNTWASMDTCCDLPGVRDEESCPAPPYACTCSSNVQGAPGPPGPIGKPGPRGE
KGDKGEQGSKGEVGPPGKAGFEGGLGPVGSIGPRGITVQGKIGPPGARGEKGDPGRPGVQ
GSPGPPGSKGEEGIPGPRGIRGVEGNIGAPGITGTRGFQGLPGYPGPVGERGPFGPVGPT
GLPGNKGERGEKGEPQSMAMIYQLVTQACEQLVHKEVLKLDMYINEISRKPVPIEEPVGP
PGEPGIPGSRGPPGARGNQGSVGSRGRPGRPGYPGEQGRRGIPGEKGSLGNNVQGPSGIK
GLAGPPGESKPGVPGPKGNDAKPGPPGTTGPSGQPGEIGPQGMCDSSGGCRNVPQQTEDP
YYDYQP
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctcacctccttgcatccagaccatcgtctctaaggccaatgctgtgtttcctg
ctcagtgtcttcttgctgctgtcctcaggagttcatggccagggtcgtctgaagctgacc
gttctgtctgaggaccgattgcagatgaagtggaaagaggctgatggtcccgttcaagga
tacaaagttcgggtcagaacaatgtcagaagagcagcaaccagagctgatgctgaccacc
acccgaggccgggcaacagtggcgggactggactccagtcaggaatactccctccaagtc
ttcgttctgaacgggacgacggagaagcttctggcaaaaaggcgattcactttagagggt
ctgcgagaggaggagatgatccgcagcggtagccgtgagaaccgtaggaagttgatccca
ggcgggtcggcctcgggggacctggacgattcgacggctgttctgctggacctgccaaca
gttctgtttccagaacccactcttaccactgctgccactgtctcaactgcagagccctca
gccacagaaagcgcttccgaataccctgatgagcccccagagaaaaccaccagagagaag
aggaagaggaagaaagagaaggagcagcatagttccacagtggaaaacaaggaggagcat
gggatgaaacagggctttccccagaggaagccatatgagtgtgagagtgacacggcggca
gacatcatgctgttggttgacggttcctggagcatcggacgcaccaatttcaggcgggtc
agagacttcctggagggtctggtgacgccgttcaacattggaccaaaccacattcagatc
gggctgacccagtacagcggagaccctcgcaccgagtggcacctgggaaacttcaccaca
aaagagcagctgttggaggcagtgaggaatttcagatacaaaggaggaaacacatttaca
ggacaggcactgctccacgtcatggaggaaaacatgaagcctaaggcaggagcacgagcc
agtgcgccattttttctggttctgttgactgatggaaagtctcaggacgatgccattgca
gcagctaaccggctgaagaatgcaggcgtggaaatcatcgctgtaggtgtgaaaaatgca
gatgaagctgaattgaggcaggttgcctcagagccagttgacctgaacgtctacaatgta
aatgatttccccctgctcagcaagctggtcgctcggctggttcacattctgtgcaggagg
atagaggaccgtggcatctcaaaacgaatggagcctgcacccaccacacagccaggcctc
tcctttcccagtcctactgatctgcggttttcccaacttggatccagacaagtgaagctg
cactggaccaatcctgcccagcccgtccagcagtacagagtggtttaccacagtgctgag
agtcagagtccacaggaggtggttttatccggctctgaatccactgttctgctcgatggc
ctctcatctcagacactctatcacatctccatattccctgtgtacaccagcagcattggc
ttggccctcagaggaactgtcactacattgcctctggctatgccaaccgacttggaagtg
actccctcctcttacagtactctgcaagtaagttggagtccagctcctggtgcgactcat
tacatgatcctatactcagcactcagcgacggagagcctgaagatgcaaaggaggagaaa
ttcagcgcaggccagacagtggtggagcttgcaggcttgctgccagaaacagactactct
gtcactctttatgctctctatgatgaagagcccagtgatccagtcacttcagtttcccgc
acattacccctcccagctccggttggaattcacttcccgattgtaacccacagcatgata
aaggtgagctgggtctccggtgctgtggatgtcccaggccacagaatcacctacagcacc
aatcatggcagtgacaccaagcagatggaggtcaaaggccagaactctgtggtgctgcaa
agcctttcatctctgtcccgatacctggtttcagtccagtcccactacccgcaaggcctg
tctgccacactcaccagtaacgtcacaacactgaaggtgccttctccatcagatctcaag
gtgactaatttctcgggcagtgaaattatggtacgctgggcagcagcagcagatgatgtg
gtctattacctcatcaaatggatctctttaagtgaaggagacctgaggcagctgaaggtg
aatggagacaatgaaggaacgatcctggagggagtggaggaggataaagaataccagatc
tctctgtctgcactttatggagatggagctcagagtgaggctgttgccattcgatacagt
accttgtcaggcggaggcccgtccagtgtatccgtgtcagaagaaactgcagttagcatg
ttggtcaactgggtgcctccaaatgctcacgtcctccagtaccgggtttcttacacacca
ctgaccggagctgagacccaggatggaactgtgttggtccccggtggtcataagcaggtg
gtgctggagtcattgcagccagatacacgttatagcatcttagtcactgcagagtatcgc
aacagagagggaggcagcggctcagctcaaggcaaaaccgccagtctacgtgtgagcagc
ataagcgtcgtcaggtcggaccactccagtgtctgtttgtcctggaggcccgtgttggcg
gtcgatggataccgtgttgtcattcagtcagttaaagacaagcaaataaaacaggaaact
gtgagtgagtccaccaacagctactgcttcaaccacctggaacctgaaaccctgtatcgc
atcagcgtacattcgcttcttggctctgcagagggcgctgccgtctccattctccatcct
acagctccagctccagccagaattcccattcctccccggatatatcctgtacacaatgaa
gtctgtcctgaagtcaccatccagaatggcattgttaaaggctttaacatgatggaagcg
tttggtctgacgcggaaagctcactcatcagtggagggagtgtcagccgagccctttgtc
ttcaacaatctgcctgcctacaccgtgtacagagatgtgcaactgacacagagcaccaag
tttattcaccctgccggtttctctccagagcacaccatcagcatcacttttcgcctgctg
caggacacgctgatggaggcctttgctctctggcagctcactgacaatgacttccagcca
aagatgggagttgtgattgatccttctagccaacttctgatgtacttcagcctggactac
aggggagaagtgcaggagctcacctttgatcagccacaggtccacaagattttctatgga
agttttcacaaggttcacctgtctgtcagccaggtgagcgtctccctgtctgtggactgt
cagcctgttggtgaaaggccagcccgccctctgggaaacctaccaaccgatggattcgag
atgctgggaaaactggtgaaaaccagaggacctaaaagcggttcagccccgttccagcta
cagtcctttgaaatcatctgtaacaacacatgggcttcaatggacacctgttgtgacctg
cctggagtgagggatgaggagagctgccctgctccaccgtatgcatgtacctgttcctcc
aacgttcaaggagctccaggcccccctggaccaattgggaaaccaggtcctcgaggggaa
aaaggtgataagggagaacaggggtcaaagggagaggtgggccccccaggtaaggctgga
tttgaggggggtcttggacctgtgggcagcattgggccccgaggcataacagtccaaggc
aaaattggtccaccaggagccaggggggaaaaaggagatcctggtagaccaggagtgcag
ggttcacctggacctccaggttcaaagggagaagaggggatcccaggccccaggggtatc
agaggtgtggagggaaacataggtgccccgggcattacgggaaccaggggtttccaagga
cttccgggatacccaggacctgtcggggagaggggtccctttggacctgttggaccaacg
ggtctgccgggaaataaaggggaacgaggtgaaaagggggagccacagtctatggccatg
atctaccagctggtgacacaggcttgtgaacaactagttcacaaggaggttttgaagctt
gatatgtacatcaatgagattagtcgaaagcccgttcctattgaggagccggtgggtccc
ccaggggagcctggtataccagggtccaggggcccacctggtgccaggggcaaccagggg
agtgttgggtcaagagggagacctgggaggcctgggtatccaggagagcaaggacggaga
gggatccctggagaaaaaggaagtttggggaataatgtccaggggccctcagggattaaa
gggcttgcaggtcccccaggggagtccaagccaggggtcccaggtccaaaaggaaacgac
gccaaaccagggccaccagggaccactgggccttcgggtcagccaggagagattggacca
cagggcatgtgtgacagcagtggaggctgtcgaaatgttccccaacaaacagaagaccct
tattacgactaccaaccctga
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