Xiphophorus couchianus (Monterrey platyfish): 114148009
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Entry
114148009 CDS
T05908
Symbol
ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
xco03037
]
114148009 (ift88)
Cilium and associated proteins [BR:
xco03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
114148009 (ift88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_8
TPR_12
TPR_19
TPR_14
TPR_6
TPR_16
TPR_7
ANAPC3
TPR_9
TPR_11
TPR_17
TPR_CcmH_CycH
ARM_TT21_5th
TPR-S
ARM_TT21_C
DUF2225
ARM_TT21_N
RPN7
TPR_10
ARM_TT21_4th
HEAT_Nup120
TPR_15
DUF7017
DUF2989
HAT_PRP39_C
ARM_TT21_2nd
Consortin_N
SHPRH_helical-1st
RNPP_C
NatA_aux_su
FumaraseC_C
Motif
Other DBs
NCBI-GeneID:
114148009
NCBI-ProteinID:
XP_027878691
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All DBs
Position
7:complement(6375483..6398651)
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AA seq
872 aa
AA seq
DB search
MENVHLAVEEEDLYSGYNDYNPTFDSEELENDVGFQQAVRTSHGRRPPMTAKFPGTAIGG
RPLVSSFGSRIPMASSMGRPMTGAVQDGAARPMTAVRAAGYSSSLMRGSTFDPLGQSKGP
APPLEAKNEDTAEEKIKILEKKVNDLIEESCMAQSIGAFQLALEKAKEAGRKERALIRQR
EASGNTEHINLDLTYSGEVIKQGSNMTTVAASISTQLHRQYEQRKAVLLNLANQYANNEM
YPEALNSYHVIVKNKMFTNAGRLKVNMANIYFEQKNYPKAIKFYRMALDQISNTHKELRI
KIMQNIGVVFVRLGQYSDAITSFEHIMTESPNIKTGFNLILCYYAVGDRERMKKAFQKLI
SVPLGIDDEDKYIPASDDPSSNMVIEAIKNDKLHQMERDLKVLAEKYIMTAAKLIAPAIE
TSFASGFDWCVDMVKCSQYVELANDLEINKAITYLRQKDFNQAVETLKTFEKKDSRVKSA
AATNLSFLYFLEKDYDQADRYADLAMNADRYNPAALINKGNTVFVKKDYEKAAEFYKEAL
RNDSSCTEALFNLGLSYERLNRLEEGLDCFLKLHSILRSSAEVMYQLAHLYEQLGDPQQA
IEWLMQVISATPTDPHVLAKLGKLHDDEGDKSQAFQYYSESFRYFPSNIDVIEWLGAYYI
ETQFCEKAIQYFERATLIQPNYVKWQLIVASCYRRSGNYQKALETYKEIHRRFPENVECL
RFLVRLSTDMGLKEVQEYATKLKKVEKMKELREQRVKSGRENSARGRREGSTGSAENAKA
EPQPEPKQFSPLLDSDSGRSSSSSSKGERLSAKMRSLPGSNEPYEASSPKELDASYVDPL
GPQMDRPKTGAKKPADDDDFADEDLGDELLPE
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgttcacctagccgtagaggaggaggatctttattcgggctacaacgactat
aaccccacatttgactccgaggaactggagaacgatgtgggcttccagcaggcagttagg
accagtcatggaaggagacctccgatgactgcgaagtttccaggcaccgccatcggaggt
cgacctttagtttcatcttttggttcccgaatcccgatggcttcatcaatgggcagaccc
atgactggagctgtccaggatggtgctgcccgtccgatgactgctgtcagagctgcaggt
tactcatcctcactgatgcgcggctcaacctttgaccccctgggacagtccaaggggcct
gcgcctccacttgaagcaaagaatgaagacacggcggaagagaagatcaagatcctggag
aagaaagtgaacgacctgatagaggagagctgcatggcacagagcataggcgcctttcag
ctggctcttgaaaaagccaaagaggcagggaggaaagagcgagcgctgatcagacagagg
gaagcgtccggcaacacggagcacatcaacttagacctcacttactctggagaggtaata
aaacagggatcaaatatgactaccgtggcagcaagcatttcgactcagctacacaggcag
tatgagcagagaaaagctgttttgctcaaccttgccaaccagtatgcgaacaatgaaatg
tacccggaggctctgaacagctaccacgtcattgtgaaaaacaagatgttcactaacgca
ggccgcctcaaagtcaacatggccaacatctactttgaacagaagaactaccctaaagcg
atcaaattctaccgcatggcgctggatcagatatccaacactcacaaggagctgaggatc
aagatcatgcagaatatcggagtggtgtttgtccgcctgggccagtactcggacgccata
acgtccttcgagcacatcatgaccgagagtcccaacataaagaccggcttcaaccttatc
ctgtgctactacgccgttggagacagagagaggatgaagaaggcctttcagaagctcatc
tccgttccactgggcatcgatgatgaagataagtacatcccagccagtgatgaccccagt
tccaacatggtcattgaggccattaaaaacgacaagcttcaccagatggagagggatctg
aaagtcctggctgagaagtacatcatgactgcggccaaactcattgctccggccattgag
acttcctttgctagcggctttgactggtgtgttgacatggtgaagtgctcgcagtatgtc
gagctagccaatgatctggagataaacaaagccatcacatacctcaggcagaaggacttc
aatcaggcggtggaaactctgaaaacattcgagaagaaggacagccgagtgaaaagcgct
gcagccaccaacctttctttcctctatttcctggagaaggactatgatcaggctgaccga
tacgctgacctcgctatgaacgccgatcgctacaaccccgccgcccttatcaacaagggc
aacacggtgtttgtcaaaaaggactacgaaaaggctgctgagttctacaaagaggcactg
aggaatgactcctcgtgcaccgaggccctctttaacctgggtttgtcctatgagagactg
aacagattggaggagggcctggactgctttctgaagcttcattcaattctgaggagcagc
gctgaagtcatgtatcagctggctcacctctacgagcagctcggagaccctcagcaagcg
atcgagtggctgatgcaggtcatcagcgccactcccacagatccacatgtactggccaaa
ctgggaaagctgcatgacgacgagggggacaagtcccaggctttccagtactacagtgag
tctttcaggtactttccctccaacatcgacgtgatcgagtggctcggggcttactacatc
gagacccagttctgtgagaaggccatccagtactttgaacgagcaacgctcatacagcca
aactatgtgaagtggcagctaatagtggcgagctgttacagaagaagtggaaactaccag
aaagctctggaaacctacaaagagatccatcgaaggtttccggaaaacgtggagtgcctg
cgcttcctggtgaggctgtcgacagacatggggctgaaggaagtccaggaatatgccacc
aagctgaagaaggtggagaagatgaaggagctcagagagcagagagtgaagtcgggccga
gagaacagcgccagaggtcgcagggagggcagcacagggagtgctgaaaatgccaaagca
gagcctcaacctgagcctaaacagttcagtccactgttggactcagacagcggccgcagc
agcagcagcagctcaaagggggagcgtctgagcgccaagatgaggtcacttcctgggtcc
aatgagccctatgaagccagcagcccaaaagagctggatgcctcgtacgtggacccgctg
gggcctcagatggacagaccaaagacgggggccaagaagccggcggatgacgacgacttt
gcagacgaagacctgggagacgaactgctaccggagtag
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integrated database retrieval system
