Xiphophorus couchianus (Monterrey platyfish): 114148286
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Entry
114148286 CDS
T05908
Name
(RefSeq) regulator of nonsense transcripts 3A-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03013
Nucleocytoplasmic transport
xco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114148286
03015 mRNA surveillance pathway
114148286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114148286
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114148286
mRNA cycle factors
P-body specific factors
114148286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
114148286
NCBI-ProteinID:
XP_027879254
LinkDB
All DBs
Position
7:complement(9317854..9324195)
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AA seq
468 aa
AA seq
DB search
MRSDKDQMTAGKEKSIFEIQLKDVPREQENIPANAKPKEEKKEVFTKVVIRRLPPNLSKE
QLEEHLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKSTEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSMANPEILLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSDKDIKIKLLKKSDRDDDVDSDRMKEKSEPCDAGVGKWEKTGGQMKSK
EPKENRGQAENDKEQRDQHGRRQRDKDHRSKDEERKRQRHHYEFDKFMRRKDETKWGKGY
CQDRAKKEGHHHGYSYCPDGADKMGKEDREDLSNRKERLRNKVSEKDRPAMQLYQPGARN
RKRMSSANKGYDCLPIGHSPECRTEHCYEVVAMTAGIERGFEKSKDEQ
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgataaggaccaaatgaccgcgggtaaggagaaaagcatcttcgagatacaa
ttaaaagacgtcccaagagagcaagaaaacattcccgccaacgctaagccgaaagaagag
aagaaggaggttttcaccaaggtggttattcgaagactccctcctaacctgtcaaaggaa
caactggaagagcatctcagtcctcttccgtcttatgactactttgagtttttcccagca
gatcaaagtctctatccccacctcttctcccgagcttatatcaactttaaaagcacagaa
gacatcctgctgttcagggatcgatttgatggctatgtctttattgacaacaagggtcag
gaatatcctgctgtggtagagtttgcgcctttccagaagatttccaaaaagaagctgaag
aagaaagatgccaaagccggaagcattgaagaagatccagaatacaagcgatttttggaa
aactactcctgtgatgaggagaagtccatggctaatcctgagatacttcttggggagata
gaagctaagaccagagagctcattgccaaacgaacaacacctctcctggagtacatcaaa
aataagaaaatcgaaaaacagaggataagagaggagaagagggaagagagaagaagaagg
gagcttgaaaagaaaaggcaacgggaggaggagaaacgaaagcggcgagaggaggagaga
cgcaagcgaaaagaggcagagaagcagaagaaactgtccgataaagacatcaaaattaag
ctcctaaagaagagcgacagagacgatgacgttgattcagaccgtatgaaggaaaaaagt
gagccttgtgatgcaggtgtgggcaagtgggagaaaacgggaggacaaatgaagtcaaaa
gaaccaaaagaaaacagaggtcaggctgagaacgacaaagagcagagagatcagcacggc
cgcaggcagagagataaggatcaccgcagcaaggacgaggagagaaaacggcaacgacac
cactacgagtttgataagttcatgcggcggaaagacgagaccaaatgggggaagggctac
tgccaggaccgagccaagaaagagggccatcatcatggctattcttactgtcctgacggg
gcagacaaaatgggaaaggaggacagggaggacctgagcaacagaaaggaacgcctccga
aacaaggtgagcgagaaggaccgtcctgccatgcagctttatcagcccggcgcgcgcaac
aggaagcgcatgagttcggctaataaaggctatgactgcctccctatcggccattccccc
gaatgcaggacggagcattgttatgaggttgttgccatgacagcggggatcgaaaggggg
tttgagaaaagcaaagacgagcagtga
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