Xiphophorus couchianus (Monterrey platyfish): 114148375
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Entry
114148375 CDS
T05908
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114148375 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114148375 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114148375 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xco04147
]
114148375 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
xco00536
]
114148375 (col4a2)
Exosome [BR:
xco04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114148375 (col4a2)
Glycosaminoglycan binding proteins [BR:
xco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114148375 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114148375
NCBI-ProteinID:
XP_027879406
LinkDB
All DBs
Position
7:complement(12806199..12860165)
Genome browser
AA seq
1671 aa
AA seq
DB search
MSATMQRQQDRAHTNLRVLLLCLFLAALASTVQAGGKKHSGPCGGRDCSGGCKCFPEKGA
RGLPGLLGPQGPQGPPGRPGDPGIQGHKGQKGDQGTGGFIGPKGSTGMTGVPGFSGNDGI
PGHPGQAGSRGKPGADGCNGTKGELGLPGLPGFDGGPGNPGVKGRKGEKGDSLEVSVYMK
RFRGDPGRPGEDGFPGPPGPQGQEGSRGPVGPKGPPGPPGPRGPKGTMTKVLKGVKGETG
DIGPQGLPGNYTTQQRQPITGPSGFPGDKGERGDLADNLDGKGETGIMGMPGPRGESGAN
GPPGRKGEPGYPGLNGRDGPKGGTGDPGELISSGFPWSAGGLPGPRGETGPDGERGRIGD
QGSPGPPGRPASDTQQQIWDFFGPFGAKGEQGDKGLPGDQGRPAVFPGHKGSDGSPGSRG
PPGPRGSWKEFFKGDEGPRGRPGNAGVKGFKGNHGECQCSGENFRPGLPGPAGEHGDPGM
TGEFGYEGDMGDQGPRGADGFPGFAGLNGFPGPKGRKGETSFAREKGYPGEPGDPGIDGV
VGLHGSPGPNGLHGLSGNRGPPGEGPWGDRGDKGFPGWPGRPGSAGLVGTPGENFVGIKG
QHGPPGDDGLAGYDGVQGTPGSPGDCITHGAGGQVDVTGVCEPIPGPPGQPGPPGLSGIS
GFPGAPGPRGFSGPQGVNGEKGEQGELGRGGTPGPRGFPGPRGDLGTPGSKGSLGNPGVP
GMPGRYGSQGEKGPHGEVMGASPGPPGDPGLPGLRGQKGHLGDQGQPGFSGINGMPGMIG
FRGLEGAPGLPGEEGRPGPAGKYGFPGDPGRSGPPGPAGTTGEPGRTGERGTEGDSGPPG
PIGLKGMPGAYGDDGVIGARGLPGDPGQPGATGRPGLPGLKGKKGSHGTSGFEGVTGHSG
LKGFEGQRGGPGTPGEVGLKGLSGSKGERGEQGLQGKPGVMSPKMLLHIKGTKGEHGHQG
TPGFTGPRGTKGDQGVPGYDGTHGLPGDPSNEKGVDGDPGAQGLPGIKGMPGTPGNRGIQ
GFDGMHGDKGGKGSPGAYGHSGVQGKKGGKGDKGIRVDLPGSPGLRGEDGFTGEPGLKGL
LGPIGDLGITGFDGIEGVKGVAGNLGIEGYPGLDGQRGTPGNQGQKGFPGIPGEDGLPGV
PGFSGSKGYPGLQGLYGLDGLKGQKGVSGTPGLDIIGPAGETGVKGRKGESGIPNSQPGS
PGPSGLKGFQGNLGDFGQPGLPGLRGLQGPGGIPGLPGKTGDPGFPGPRGSQGYPGTSGP
PGLDAFPGEKGVPGENGFPGPTGMRGSRGDSGPAGYRGPDGISGKKGPKGDQGHMGIPGQ
TGLQGERGPVGPKGDTGLPGFPGVPGSQGRPPPSITIPGERGLPGLRGIQGPKGTSGGPG
PRGPPGEPGFMGPVGLKGMPGISGTPGVPGYRGEVGNVGHPGLQGMEGQRGRPGGPGLPG
MAGRSISVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLGLAGSCLPR
FSTMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEKEIQPYISRCSVCEAPSVAI
AVHSQDITIPQCPVGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFIECNG
AKGTCHYFANKHSFWLTSIDQSFHTQPSSETLKAGQLLSRISRCQVCMKNL
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcgaccatgcaaaggcagcaggatagagcgcatacaaatctgagggtgctgctt
ctctgcctcttcctcgccgccctcgcctcgacagtgcaggctggtgggaagaagcacagt
ggcccatgtgggggaagagactgcagcggtggttgtaaatgctttccagagaagggtgcc
aggggtcttccagggcttcttggtcctcagggcccacaggggccccctgggcgaccaggg
gatcctggtattcaaggacacaagggacagaaaggtgaccaaggaactggtggcttcata
gggccaaaaggcagcacgggaatgactggtgtacctgggttctctggaaacgacggcatc
cctggccacccaggacaagctgggtccagagggaaaccaggagcagacggttgtaacggg
accaaaggagaacttggactcccaggattacctggtttcgacgggggccctggaaatccc
ggtgtaaaaggcaggaagggagagaagggggattctctggaggtcagcgtttacatgaag
cgcttcaggggagatccagggagaccaggagaggacggatttccggggcctccaggacca
caaggacaggaaggtagcagaggccctgtaggacccaagggtcctccaggtcctccaggg
ccacgtggaccaaagggcaccatgaccaaagtgttgaagggagtcaaaggagaaacaggg
gacatcggaccacagggcctaccaggaaactacactactcagcaacgtcagcctatcact
ggaccttctggattcccaggtgacaaaggagaaagaggagatctggcagacaacttagat
ggcaaaggagaaactggtataatgggaatgcctggccctcggggcgaaagtggtgcaaat
ggacctccgggtcgaaagggtgagcctggttatccagggctgaacggcagagacggtcct
aagggaggcacaggtgatccaggggagctaatttcatcaggatttccctggtctgcgggt
ggtcttcctgggccccggggagagacgggtccagatggagagagaggtcggatcggagac
caaggcagccccggaccacctggacgccctgcctctgacacacagcaacaaatttgggat
ttcttcggcccttttggtgcaaagggggagcaaggagacaagggtctaccaggagaccaa
ggaagaccggctgtctttccaggacacaaaggatctgatggaagtccggggagcagaggc
cctccgggacccagaggatcatggaaagagttctttaaaggagatgaagggccgagggga
agacctggcaatgcgggggttaaaggatttaaagggaatcatggagaatgtcagtgcagt
ggtgaaaatttccgccccggtttacctggtcctgccggtgagcacggagatcctgggatg
actggagagtttggatacgaaggggacatgggagaccagggtccccgaggcgccgatggg
tttcctggatttgctggcctcaatggttttccagggcccaaagggcgaaaaggagaaaca
agttttgcgagagaaaaaggataccctggagagcctggagaccccggaattgatggagtg
gtaggattacacggttctccaggcccgaatggcttacatggtctctctggtaaccgcggt
cctccaggcgaaggaccctggggagatcgtggagacaaagggttccccggatggcccggt
agacctggttctgctgggttagtgggaacaccaggtgaaaactttgtaggtatcaaagga
cagcacggtccacccggtgatgacggcctcgcaggctatgacggagttcagggaacgcct
ggaagtcccggcgactgtattacacatggagctggaggacaggtggatgtgacaggtgtt
tgtgaacctatcccaggtcctcctggtcaacctggacctcctggactcagtggaatatca
ggttttccaggagctcctggcccaagaggtttctcaggtccgcaaggagtcaatggagag
aaaggagaacaaggagagctcggcagaggcggcactcctggaccacgaggttttcctggt
ccccgtggagacttggggactcctggcagtaaaggctctttagggaatcctggtgttccg
ggtatgcctggccgatacggatctcaaggggaaaaaggtcctcatggagaagtaatggga
gcatcgcctggccctccaggtgacccaggactacctggcctgcgagggcaaaagggccat
cttggagatcaagggcagccagggttttcaggaatcaacgggatgcctggcatgatcggc
ttcaggggactggaaggagccccaggcctgccaggggaagagggaagacccgggccagct
gggaagtacggcttccctggggatcctggcaggtcaggcccacctggtccggcagggaca
actggagagccaggaagaactggagagagaggaacagaaggtgactcaggtcctccaggt
ccaataggattaaaaggaatgccaggtgcttatggagatgatggtgtgattggagcgcgt
ggcctgccaggtgaccctggacaaccaggtgcaactggacgaccaggccttccaggactc
aaaggaaaaaaaggtagtcatggaacgtctggttttgagggagtcacaggacattctggt
ctgaagggctttgagggacaaagaggggggcctggaacgcctggagaagttggcctgaaa
ggactgtcaggatcaaagggagagagaggcgaacaaggtctgcaaggtaaaccgggggtg
atgtcaccaaaaatgcttctccacataaagggaaccaaaggagagcacggacaccagggc
actccgggttttaccggaccaagaggtaccaaaggtgaccaaggtgtgccaggctatgat
ggaactcacggtcttccaggggaccccagcaatgaaaaaggagttgatggagatccaggt
gcacagggcctgccaggcattaaggggatgccagggacacctggaaacagaggcattcaa
ggctttgacggaatgcatggcgacaaggggggcaaaggaagccctggtgcctatggtcat
tcaggagtgcaaggaaagaaaggaggaaaaggtgacaagggcattcgagtggaccttcca
ggatccccaggactgagaggagaggatggatttacaggagaaccaggtctgaaaggtcta
cttggaccaatcggggaccttggtattactggatttgacggcattgaaggggtaaaggga
gtagccgggaatctgggaatagaaggatacccagggttggatgggcagagaggcactccg
gggaaccaaggtcaaaagggttttcctggaattcctggggaagatggactaccaggcgtt
cctggcttctccggaagtaaaggttaccccggcctacagggtctttatggattagatgga
ctgaaaggacagaagggtgtctcaggaacaccaggtctggacattattggacctgctgga
gaaactggagttaaaggaagaaaaggagagagcggtattcccaacagccagccaggttct
ccaggtccatcaggactgaagggcttccagggaaatctgggtgactttggtcaacctgga
ctgccaggattacgtggccttcagggaccaggtgggatcccaggcctaccgggaaagacg
ggggatcccggcttcccaggacctcgaggatcccaaggttatcctggaacaagtggaccg
cctggactggatgctttcccaggagagaaaggtgtaccaggcgaaaatgggttccccggc
cccactgggatgaggggatctcgaggagattcaggtccagcaggctacaggggccctgat
ggaatctctggaaagaaaggaccaaagggagaccaaggtcacatgggaattcctggacag
actggcttacagggagagagaggaccagtgggcccgaaaggagacactggattgccaggt
tttcctggagtgcctggcagccagggccgtcctccaccttccattacaatcccaggagaa
agaggccttccaggactgcgaggtatccaaggcccgaaagggacttcaggggggccagga
ccgcgaggcccacctggagagccagggttcatgggacctgttggacttaaaggcatgcct
gggattagtggtactccaggagtgccaggttaccgcggcgaggtgggcaatgtggggcac
cctggtctccaaggcatggaaggtcaaagaggcaggcccggcggcccaggattacctggc
atggccggccgcagtatcagcgtgggctacctgctggtgaaacacagccagtcagaacag
acgccaatgtgtccggtgggaatgtctaaactgtgggacggttacagtctgctgtacctg
gagggccaagagaaggcccataaccaggacctcggtttggctggttcctgcctcccacgg
ttcagcaccatgccctttctgtactgcaaccctggggacatttgctactatgccagcaga
aacgataagtcctactggttgtcaaccactgctcccctccccatgatgcctgtagaagaa
aaagaaatccagccgtacatcagccgttgctcggtctgcgaggctccgtcagttgctatt
gcagttcacagtcaggacatcaccatcccacagtgtcctgtgggctggaggagcctgtgg
attggctactccttcctcatgcatacggcagcaggaaacgaaggcggcggtcagtccctg
tcatcgcccggctcctgcctggaggacttccgcacaacgccgttcattgagtgtaatgga
gccaagggcacatgccactactttgctaacaaacacagcttctggctgacatccatagac
cagtcgttccatactcagccatcatcggagacactaaaagcaggccagctcctttcacgc
atcagtcgctgtcaggtctgcatgaagaatctgtga
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