KEGG   Xiphophorus couchianus (Monterrey platyfish): 114148376
Entry
114148376         CDS       T05908                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04382  Cornified envelope formation
xco04510  Focal adhesion
xco04512  ECM-receptor interaction
xco04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:xco00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    114148376 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    114148376 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    114148376 (col4a1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    114148376 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:xco04147]
    114148376 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:xco00536]
    114148376 (col4a1)
Exosome [BR:xco04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   114148376 (col4a1)
Glycosaminoglycan binding proteins [BR:xco00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   114148376 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 114148376
NCBI-ProteinID: XP_027879408
LinkDB
Position
7:12860296..12902585
AA seq 1645 aa
MLSPSGALPPLLLLLLLAALYCSLDLTRAEGCGASCGKCDCGGVKGAKGERGFPGLQGNM
GFPGMQGHEGPPGPMGPKGDLGAPGAPGLKGVRGPPGLPGFPGNPGLPGLNGNDGPPGAP
GIPGCNGTKGERGMDGINGFPGLQGPPGLPGLEGMKGDPGGVIGIIPLKGDRGVPGSPGR
PGPPGLFGPIGPPGPRGYPGFKGDSGPPGPPGEKGDRLAFVSEKGDKGERGLRGPPGPPG
PPEEVIGQTTVLVPGPRGEKGLKGDRGEKGFCLPHQKGIKGEQGPPGPRGKPGKDGEFGI
KGEKGSSGVPGFPGLSGDKGEKGPPGYAEGPPGPPGPPGLPGKSGEKGFPGPQGEAGPPG
RFIEGARGEPGKKGEPGEKGDRGRDGEPLAGPPGRPGPVGPPGPPGLAPDPEECNMEKGN
PGPPGSPGLSGEEGQKGDKGEACVSCDGQPGPPGPAGVKGEQGPPGAVGGKGEKGRSGLP
GEPGTPGSSGSPGLMGAPGAVGEPGDIFIAPGYKGEKGVSGRPGLQGQPGREGQPGRDGL
PGQPGLKGEPAKEGIKGERGPDGDPGLMGPPGERGPPGVPGFGRPGGPGEKGSQGQPGRP
GSPGQPGLKGEPGKGISTPGPPGQPGPRGASGFPGLQGDRGETGVQGLPGFPGVKGEQGP
PGIGFPGPAGVKGISGIPGAPGVPGEPGRPGQDGSTGKAGPPGQKGEPGRGLPGPKGAQG
HQGVTGFPGDKGGMGLPGIPGSEGHTGPPGPQGVKGDVGPPGPPGQIGQSGAPGKGLPGP
QGPQGPRGETGPHGREGIKGEKGHPGSPGLDMPGPQGDKGAAGFPGDPGTKGLPGLPGVP
GRDGLIGYQGSKGEMGVMGIPGTPGFPGPPGQPGSPGLRGDPGVTGPRGESGKEGEKGER
GEEGPPGPPGNLTQTDMEHMKGEKGDIGDPGDRGSAGERGHPGIRGEQGMAGKDGEPGSP
GQPGQKGDPGFPGDPGTMGPPGPKGGVGEMGIPGPLGPKGSKGDIGTAGHPGFRGTDGEK
GDPGLPGEPGIGVPGFPGDKGRTGEPGLPGYRGDKGEKGQEGMPGKPGLQGPKGDKGGAG
YPGQSGRPGEKGIPGLPGSAGEAGREGRPGEGGRQGPPGPRGDKGEPGQDGIPGSSGERG
DPGLPGLGVPGRPGALGERGEKGDPGLPGMPGQSGVPGIKGEKGSPGPQGQQGEPGERGL
PGISLEGPKGVQGATGPAGGTGTPGAPGPAGVPGREGQQGEKGDAGRPGYQGESGQKGDS
GSPGFPGPPGLPGINGQKGERGLPGVAGFPGTKGTLGDSGFKGGAGDRGFPGEKGNEGPP
GPPGPKIFIKGDTGPPGDQGFPGPQGPPGFPGQKGEQGVTGIQGPKGETGIHGFDGQSGA
KGEPGVPGPQGPRGYPGPPGPDGVQGQVGPPGPSSMDHGFLVTRHSQSVEVPLCPGGTSQ
IYDGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSP
EPMPMNMAPITGDSIRPFISRCVVCEAPAMVIAVHSQTIRIPPCPQGWNSLWIGYSFVMH
TSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIETEDMFTKPV
PTTLKAGSLRTHISRCQVCMKRTFT
NT seq 4938 nt   +upstreamnt  +downstreamnt
atgctgtcaccgtccggcgcgctgccgccgctgctgctgctgctgctgctggcggctctc
tactgcagcttagacctgacgcgggctgagggttgtggagcttcatgtggaaaatgtgac
tgcggtggagtgaagggagccaagggtgagcgtggatttcctggccttcagggtaatatg
ggattcccaggaatgcaggggcatgagggccctcctgggccaatgggccccaagggagat
ttaggagcacctggagctccgggactaaaaggagtgcgaggtcctcctggtctgccaggg
tttccagggaacccagggctaccaggcctcaatggaaacgacggtccgccaggtgcgcct
ggaatcccaggatgcaatgggaccaaaggcgaaagaggaatggacggcattaatggtttt
ccaggacttcaagggccgcctggcctcccaggtctggaaggaatgaaaggagatcctggt
ggtgtgattgggattatcccccttaaaggagacagaggggttcctggctcacctggacga
cctgggccacctggactctttggaccaattggacctccgggacccagaggatacccagga
tttaaaggggattctggacctcccggccctccaggagagaaaggtgacaggttagccttt
gtgagtgaaaaaggagataagggtgaacgaggactcagaggcccacctgggccccctgga
ccacctgaagaagtgataggacagaccacagttcttgtaccgggaccacggggggagaaa
ggactgaagggtgacagaggcgagaaaggcttctgtctccctcatcagaaaggaatcaaa
ggtgaacaaggcccacctggaccaagaggtaaacctggtaaagatggagagtttgggata
aagggagaaaaaggttcctcaggagttcctggattccctggtttgtcgggtgataaagga
gaaaaaggaccaccgggttatgctgaaggtccacctggccctcctggcccacctggtctc
ccagggaaatcgggagaaaaaggttttcctggccctcagggagaggctggcccaccaggc
cgcttcatcgagggtgctcgtggagaacctgggaagaaaggagaaccgggtgagaaaggt
gacagaggcagagatggagaacctcttgctgggccaccgggaagaccagggcccgtcgga
cccccggggccaccaggattagcacctgaccctgaagagtgtaatatggagaaaggaaac
cctggtccacctggatctcctggattatcaggggaggagggacaaaaaggtgataaagga
gaagcttgtgttagttgtgatggccaacctggaccacctggccctgcaggcgttaaagga
gagcaaggaccaccaggcgcagttggaggtaaaggagaaaagggtcgctctggtctacct
ggagaacctggaacacctggttcttcaggatctcctggactgatgggggctcctggtgct
gtaggggaacctggagacattttcatagcacctggttataaaggggagaaaggtgtttct
ggacgtcctggattacagggacaacctggcagggaaggacagccagggagagacggactc
ccgggtcaaccgggcctcaaaggagaacctgccaaagaaggcattaaaggtgaacgtggc
ccagacggtgaccccggcctcatggggcctcctggagaaaggggcccccctggtgttcca
gggtttggccggccgggtggtccaggagagaaaggaagtcagggacagccaggccgtcca
ggaagtccaggacagcccggtctgaaaggagagccaggtaaaggtattagcactccggga
cccccggggcagcctggaccaaggggagctagtggcttccctggacttcaaggtgacaga
ggtgaaacaggtgtccaaggtctgccaggctttcctggagtaaagggagaacaaggacca
cctggaatcggctttcctggcccagcgggtgtcaaaggtatcagtggaatccctggagcc
ccaggagtccctggagagccagggagaccaggacaggacggctcaactggaaaagctggt
ccacctggacaaaagggtgagcctggacggggtcttccaggaccgaaaggtgcgcagggc
caccaaggagtcacaggctttcccggagataagggtggcatgggactcccaggtattccc
ggctcagaaggacacacaggtcctccgggacctcagggagttaaaggtgacgtcggacct
ccgggaccacccggtcagatcggccaatcgggtgctccggggaaaggcttgcctggacca
caaggacctcaaggaccacgtggagaaacgggacctcatgggagagaaggtataaaagga
gaaaagggccatcctggctctccaggcctcgatatgccgggacctcagggagacaaagga
gccgctggcttcccaggagaccccggtaccaaaggactgccgggtctgccaggcgtaccc
ggccgagacgggttaatagggtaccaaggttccaaaggtgaaatgggggttatgggaatt
ccaggaacgccgggattcccaggaccacccgggcaacctgggtcgcctggtctgagaggg
gatcctggtgttactggaccgagaggagagtctgggaaagaaggagagaaaggtgaaagg
ggagaggagggtccgccaggtcctccaggaaacctcactcaaactgacatggagcatatg
aaaggggaaaagggagacattggagacccaggtgaccgtggttctgccggagagaggggc
caccctggcattcgaggagaacagggaatggctggcaaagacggtgaacctggatcacct
ggccagccaggtcagaaaggagatcctggttttcctggagatcctggtaccatgggacct
ccagggccaaaaggcggcgtaggggagatgggaataccaggtccacttggtccaaaaggt
tccaaaggagacatcggtacagcgggtcatcctgggttcagaggtacagatggtgaaaaa
ggagacccgggactacctggcgagccgggtattggtgtccctggatttccaggagacaag
ggcaggacaggtgagccaggacttccaggataccgtggagacaagggtgagaagggtcag
gagggaatgcctggcaaacccggcctgcagggaccaaagggtgacaaaggaggcgctggg
tacccaggtcagtcaggcaggccaggcgagaagggcattcctggacttcctggatctgcc
ggagaggccggtcgtgaaggtcgccctggcgaaggtggccggcagggacctccgggtccc
cgcggagataagggtgagcctggacaggacggcatccctggatcctctggggagagagga
gacccaggtttgccaggtcttggtgtgcctggacgccctggagctctcggtgaaagaggt
gaaaaaggtgatccgggtcttcccggcatgcctggtcaatcaggtgtccctggtattaaa
ggagaaaagggttctcctggacctcagggacagcagggggagccaggagagcgaggtctt
cccggcatctcgctggaaggccccaaaggagttcagggagcaacaggacccgccggagga
acaggaacaccaggggcaccaggacctgctggagtgccaggcagagagggccaacagggc
gagaaaggtgatgcaggtcggcctggttatcagggagagtcggggcaaaagggcgactct
ggatctcctggatttcctgggccacccggcctcccaggcatcaacggccagaagggcgag
cgaggattaccgggagttgcaggcttcccaggcacaaaaggtactctgggtgactctgga
tttaaaggcggcgcgggtgacagaggcttccctggagaaaaaggtaatgaaggaccccct
ggtccacccggccccaagatcttcatcaaaggagacactggaccccctggagatcagggt
ttccctggacctcagggaccaccgggctttcctgggcagaaaggagagcaaggtgtgacg
ggtattcagggtccaaaaggtgaaaccggcatccatggatttgatggtcagtcaggcgcc
aaaggagaacctggtgtgccggggccacaaggacccagaggatatccaggtccaccggga
ccggacggtgttcaaggtcaagtgggtccgcctggcccgtcgtccatggaccatggtttc
ttagtaacacgccacagccaaagtgtggaggtgccactgtgccctggaggtacctctcaa
atatatgatggctactcgttgctctatgtgcaaggcaatgagcgctcccatggacaagac
ttaggtacggcaggcagttgcctccgaaagttcagccccatgccgttcttgttctgcaac
atcaacaacgtttgcaactttgcgtctcgtaacgattactcctactggctcacctcaccg
gagccaatgcccatgaacatggcgcccatcaccggggacagcatcaggcccttcatcagc
aggtgtgttgtatgtgaagctccggccatggtgatcgcagtccacagccagacaatcagg
atcccgccttgccctcaaggctggaactctctgtggatcggctactcctttgtcatgcac
accagcgcaggtgctgagggttcaggtcaggcgttggcctctcctggttcctgtctggag
gagtttcgcagcgccccattcatcgaatgtcacggtcgaggaacctgcaactactatgcc
aactcctacagcttctggctcgccaccatcgagacagaggacatgtttacgaaacccgtc
ccgacgacgctcaaagcaggcagcctccgaacacacataagccgctgtcaagtgtgcatg
aagaggacattcacttaa

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