Xiphophorus couchianus (Monterrey platyfish): 114148538
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Entry
114148538 CDS
T05908
Name
(RefSeq) transcription factor Sox-1a-like
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xco03000
]
114148538
Transcription factors [BR:
xco03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
114148538
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
DUF1980
Motif
Other DBs
NCBI-GeneID:
114148538
NCBI-ProteinID:
XP_027879700
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All DBs
Position
7:complement(11566035..11581343)
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AA seq
296 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTSTGPTGPNGGSKASQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGPSGGGGVGLSVGMSSSGVGQRLESPGGHGGSAGSGYAHMNGWANGAYSGQ
VAAAAAAAAMMQEAQLAYSQHPSSGAHHHHHSHHHHSHNPQPMHRYDMTALQYSPISNSQ
SYMNASPSSYGGITYTQHQGSGVSSSAAMGTLGSLVKSEPSQSDRDQWTWITQWKP
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagactgaccttcattcccccggcccccaaacgaacacgagc
acggggccaacggggccgaacggcggctccaaagcgagccaggagcgcgtgaagagaccc
atgaacgcgttcatggtgtggtcccggggccagcggaggaagatggcgcaggaaaacccc
aagatgcacaattcggagatcagcaagcgcttgggcgccgagtggaaggtgatgtccgag
gcggagaagcgtcccttcatcgacgaggcgaagcggctgcgagccatgcacatgaaggag
catccggattacaagtaccggccgcggcgaaagacgaagacgctgctgaagaaggacaaa
tactcactggccggcgggctgctttccgggcccagcggtggcggtggtgtcggtttaagc
gtcggcatgagctcatccggggtcggacagaggttagagagccccgggggtcacggaggt
tccgccggctccggctacgcgcacatgaacggctgggcgaacggcgcgtactcggggcag
gtggccgcagccgccgcggccgctgcgatgatgcaggaggcgcagctcgcctacagccag
caccccagcagcggggcacaccaccaccaccactcgcaccaccaccactcccacaacccg
cagcccatgcaccgctacgacatgacggccctgcagtacagccccatctcgaactctcag
agctacatgaacgcctcgccgtccagctacggcgggatcacctacacgcagcaccagggc
tccggcgtctcctcctcggctgccatgggaacgctggggtcgctggtgaagtcggaaccg
agccaaagtgaccgtgaccagtggacgtggatcacccagtggaaaccgtaa
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