Xiphophorus couchianus (Monterrey platyfish): 114148948
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Entry
114148948 CDS
T05908
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114148948 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114148948 (bard1)
04121 Ubiquitin system [BR:
xco04121
]
114148948 (bard1)
03036 Chromosome and associated proteins [BR:
xco03036
]
114148948 (bard1)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114148948 (bard1)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
114148948 (bard1)
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
114148948 (bard1)
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
114148948 (bard1)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
114148948 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_5
Ank_3
Ank_4
BRCT_2
BRCT
zf-RING_5
zf-RING_10
zf-C3HC4_3
zf-RING_UBOX
Amidohydro_1
zf-C3HC4_4
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
114148948
NCBI-ProteinID:
XP_027880264
LinkDB
All DBs
Position
7:19654757..19677219
Genome browser
AA seq
800 aa
AA seq
DB search
MDNTTSLQTDGWKNTKEAVANFRRLLLCSKCSNLMEEPVCLGMCEHMLCRSCAGPWAGDG
CAVCLSPAWVKDIQINRQLSSIIQLFSDLESLLNPTEQPDSSVAEVSSQAEGAVLKCKKN
FKLWFSPRSRKVRCKVEKPLEITAPDRKSFEEQPAAQSKVPTAQCQDLSVFNFTSSSQDS
SSSQNESNVNSKGKKRSKKTATTRKVQGHTSATRRQTKENLKKKKLEAINQQWGITGNQN
PSSGPEPSCAVGARGSRKRVSFLSSSVSTDEAQAEASQVCELSLTNRTINVSLLGGEINV
LSHQSQHGQSTSSQMSSTNNPNLDDSSKKETNTSPQESLSKRSKTVERNCSLETTPKRQR
ASSGQRRKSPGGKASPFTERLTLASPTSEKKKKHPREGKQHSPTVVALMSSDSHNKSVCS
PRSSFGRSSPGSPAIRKRNHRGETPLHLAAIKGDVDSVKELLDQGADPNLKDNAGWTPLH
EACNLGHLAAVKVLVARGALLNTPGYENDSPLHDAVRNGHAAIVKLLLQLGASQNVLNLH
GKRPADYAVSQEMLAIFQEAAERIQYANSHTSHSPSATISASSESARRDRTLMLLASKLS
SREQRQLVKLGVLLRGRIVDTFSDSVSHVVVPEGQMPTTYSTLLGLLAGCWVVKYSWVKA
CLQAGKWLPEAEHEAGEGPQRSRINRCSLLPPLFDGCFFFLLGSFKGTTKDELAKLLQEG
GGQLLRRQPKPDSDVTQTLNAAAYHAEPGSDQALCTQYIIYNPQGTYKPAVVRRGKVWSA
PSTWIIDCIAAFSLLPVPQH
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggataacaccacatcgctacaaacagatggctggaagaacactaaagaggcggttgca
aactttcgtcgactgttgctttgctccaaatgctcaaatttgatggaggagccagtgtgt
ctggggatgtgcgagcatatgctgtgcaggtcttgtgctggcccctgggcaggagacggc
tgcgcggtgtgtctcagccctgcgtgggtgaaggacattcaaatcaacaggcagcttagc
agcatcatacagctcttcagtgacttggagtccctgcttaatcccacagaacaaccagac
tcctctgttgctgaggtcagttcgcaggcggagggtgcagttctaaaatgcaagaagaac
tttaagctctggttcagtcctcgcagtcgaaaggtgcgctgcaaggtagagaagccttta
gagatcactgctccagacaggaagtcgtttgaagaacagcctgctgctcagtccaaagtc
cccacagctcagtgccaggacctttcagtgtttaatttcacttcgtcctcccaagactct
tcatcttcacaaaatgaaagcaatgtaaacagtaaaggaaagaaaagatctaagaaaact
gctactacaaggaaggttcaagggcacaccagtgccacacgtagacagactaaagagaat
ttgaaaaagaagaagctggaggccataaaccagcagtggggaattacaggcaaccaaaat
ccctcatctggaccagagccatcctgtgctgttggagcaagagggtcccgcaaaagggtt
tctttcttaagctcttctgtctcgactgatgaggcccaggctgaagcctcgcaggtctgt
gaactcagtttgaccaaccgcacaataaacgtaagtctcttgggaggggagatcaatgtg
ctgagtcaccaaagccagcatggtcagagcacatccagtcagatgtcgtcaacaaataac
ccaaatctggatgacagttccaaaaaagagacaaacacgtctccccaggagagtctctcc
aaaagaagcaaaacagtggagagaaactgctccttggaaaccacgccaaaaagacagagg
gcctcttcaggccaaaggagaaaatcacctggtggaaaagcttcacctttcactgagcgt
ttaactttagcaagccccacaagtgaaaagaaaaagaaacacccgagagaaggtaaacag
catagtccgactgtagtagccctcatgtcttcagacagccacaataaatccgtgtgcagt
cctcggtcgtctttcggccgttcaagccctggaagccctgcaataaggaagaggaaccac
agaggagagacccctctacatcttgctgcaataaagggagatgtagattctgtcaaagaa
cttctggatcagggagctgaccccaacctgaaagataacgccggctggacaccactgcat
gaggcttgtaatctgggccacctggcagctgtgaaggttttggtcgcaaggggagccctg
ttgaacacacctggctatgaaaatgattctccactccatgatgctgtgaggaatggacat
gcagccattgttaagctgctgctgcagctcggtgcctcacagaacgttcttaatctacat
ggaaagcgtcctgcagattatgcagtgagccaggagatgctggcgattttccaggaagct
gcagaaagaatccaatatgctaattctcatacatctcatagcccctcagccactatctct
gcgtcgagcgagagtgcaagaagggatcggactttaatgttattggccagcaagctatca
tcacgagagcagcgtcagctagtcaaactgggagtgttactgagaggaaggatcgttgat
accttttctgactcagtgagccatgtcgtcgtgccagaaggacaaatgcccaccacctac
tccaccctcctgggtcttcttgctggctgctgggttgtcaaatacagctgggtgaaagca
tgtctgcaggcgggaaagtggctgcctgaagctgagcatgaagcgggagaaggccctcag
cgcagccgcatcaacagatgtagtttgcttccaccacttttcgatggctgtttcttcttc
ctcctcggctcctttaaggggacaaccaaagacgagctcgccaagctgttgcaagaagga
ggcggccaacttctgaggcggcagccaaagcctgacagcgacgttacacagactctgaat
gcagcagcctaccatgcagagccaggctctgaccaggcactctgcacccagtacatcatc
tacaacccacagggaacctacaagccggcggttgtcagacgagggaaagtgtggtccgct
ccctcaacctggatcatcgactgcattgcagccttcagcctcctccctgtgcctcagcat
taa
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