Xiphophorus couchianus (Monterrey platyfish): 114149107
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Entry
114149107 CDS
T05908
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xco03041
]
114149107 (ythdc2)
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114149107 (ythdc2)
Spliceosome [BR:
xco03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
114149107 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_N
AAA_19
Ank_2
Ank_5
ATPase
nSTAND3
Ank
Ank_4
PhoH
AAA_22
SRP54
AAA_30
AAA_7
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
114149107
NCBI-ProteinID:
XP_027880482
LinkDB
All DBs
Position
8:28324232..28361400
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AA seq
1399 aa
AA seq
DB search
MFNAMGTSQKPSRRQNMSPQGSSSSDSKTIHIGEEVKIAVNLSLERFRYSDEKEMEFPSS
LSSTERAFIHRLAQSLGYISKSKGKGSNRFLTVRKRDVSDKPRPSTSLDLCPSSLYFIRS
LLQRFPTSKKERADMHPNIKSGMSLATETNSGFDRNRASGRLNNGIPMVPRKRAPSELDI
FRSSLPVHEHQEEIVRLIRENRVVLVLGETGSGKTTQIPQFLLDDCSRNGKPCRIFCTQP
RRLAAIAVAERVAAERGESVGQTVGYHIRLESRVSPKTLLTFCTSGVLLRTLMAGDTSLT
TVTHVIVDEVHERDGLTDFLLTKMRDVVQRIPTLKLILSSAALDIDLFLQYFGSCPVIHL
KGKLFEVKELFLEDILRQTGFNRKDIWKYQEETQRREGKQKRLTEWCETVESGSVGGKRT
HMLAPGFLHSGSCGDREDEGSIKLNENDTEQLEPWLLREMDSCISSIFLHEDQKAFSQLF
NLILHENVPVDVMHSETGSTALMVSAARGFLPQMQQLLSMGADINMKASNGWTALDFAKH
FQQTEAMDILKSSIPLGEVSSLEESALVQCSPTELSSEEQELLKQYHYSFDDQRVDLDLI
MTLLHNICTTTNEGAVLVFLPGYDEIVSLKDRILIDDKRFSTHPESYQVFTLHSDMQTLD
QKRAMKPAPSGVRKIILSTNIAETSITIDDVVFVIDSGKIKEKSFDTLSRVSMLKTVWIS
KASVLQRKGRAGRCRPGVCFHLFSRLRFNNMQEFQVPQLLRMPLQELCLQTKLLAPSSCP
VAEFLSKAPQPPPTHAIQSAVQMLKTIDALDQNEDLTDLGFHLADLPVEPHLGKMVLCAV
VLKCLDPILTIACTLAYRDPFTLPAESSQKRAALQSRKRFTSNTFSDHMALLRAFQAWQK
ARSEGWERSFCERNFLSQSTMDMILGMRTQLLGQLRAIGFVRARGGSDIRDVNLNSENWA
VVKAALVAGMYPNMVHVNKKTSLLSSNREKKVNFHPTSVLSQLQLKEKNSSKSGQTLPTD
WLIYDEMSRGHRMASVRCCSVVTSITVAMFGGGTKLLSSTLHESAVQKRNENPLDDMSDS
DTEELVEIKIDDWLVFGLERETAALVSELRQKWQNLFIKRIRCPSKPWSQQDEAVIQTLV
SVLGAEEQEAGLQQPTGIGQRPRPMTSEDGPRSTGRNSKASPQLPSHNTNDKPRRMLSSD
LLKTNSHSRDEVSLAIKKLWDYPSSSSSSSCSVTLDGPPESPSGKLVLKSVSQKPTVSSV
RYFIMKSNSIRNIEISQQKGIWSTTPSNETKLTQAFLANSFIILIFSVQGSGHFQGYARM
TSVVSQESCQDWGFMGLGGVFSVEWIHKESLPFPFTQHILNPWNDNKRVQVSRDGQELEP
QAGSHLLSLWERNSGNQLH
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatgctatggggacatcacaaaaaccgtccaggcgtcagaacatgtcacctcaa
ggctccagttccagtgactcgaaaacaattcacatcggtgaagaagtcaaaatagcagtg
aacctctctttggagaggtttcgctacagtgatgaaaaagagatggaattcccatcctca
ctgtccagcactgagcgggcctttattcatcgactggcccagtccctgggctacatttcc
aaaagcaaaggaaaaggctccaatcgttttctgacagtcaggaagagagatgtttcagac
aaacctcggcccagtacatctctggatctgtgccccagctccttatatttcatccgcagc
ctgctgcagagatttcccaccagcaagaaggaacgtgcagacatgcatcccaacatcaaa
agtggcatgtctctggctacagaaactaatagcggctttgacaggaacagagcaagtggt
cgcctaaacaatggcattcctatggttcctaggaagagagcaccatcagaactggacatt
ttccgaagttccctgcctgtacatgagcaccaggaggagattgtccgactgatcagagaa
aacagggtggtacttgttttgggagagactggctctggaaaaactacacagattccccag
tttttgttagatgattgtagcagaaatggaaaaccctgcaggattttctgtactcagccc
aggcgcctggctgccatcgctgtggctgagagagtcgcagcagagagaggcgagagtgtt
ggccagacagttggttatcacatcagactggaaagcagggtctcgcccaagacgctgcta
accttctgcacaagtggagtcctcctcagaacactgatggctggggataccagcctcaca
actgttacccatgtcattgtggatgaggttcacgagcgtgatggtctgactgacttcctt
cttactaagatgcgggatgttgtccagaggattcccacactgaagttgattctctctagt
gcagctctggatatagatctattcctccagtactttggctcctgccctgtgatccacctt
aaagggaaactatttgaagtgaaggagctctttctggaggatatcctgcggcagacgggt
tttaatagaaaggacatctggaaatatcaggaagagactcagagaagagaggggaagcag
aaacgattgacagagtggtgtgagacggtggagagcggttctgttggtgggaaacggacc
cacatgttggctccaggcttccttcattctggcagctgtggggacagagaagatgagggc
tccatcaagctgaacgaaaatgacacagagcagcttgaaccgtggctgctgcgggagatg
gactcctgcatttccagcattttcctgcatgaagaccagaaggctttcagtcagctcttc
aacctcattcttcatgaaaatgtccctgtggacgtcatgcacagtgagaccggctccacg
gctctgatggtgtcagcagcgcggggattccttccacaaatgcagcagctgctcagtatg
ggtgctgatatcaacatgaaggcatctaacgggtggactgctttagactttgctaaacac
ttccagcagacagaagcaatggatatcctcaagtcttcaatacctttgggggaagtgagc
agcctggaggaatcagcgttggtacagtgcagtcctacagagctgagcagtgaagaacaa
gagctcctcaaacagtaccactacagctttgatgaccagcgggtggacctggatctgatc
atgacgttgctccacaacatctgcaccaccactaatgagggtgctgtcctcgtatttctt
cctggatatgatgaaattgtgtcattgaaggatcgcatcctcattgatgataagaggttc
tccactcaccctgagagttaccaggttttcactctgcattctgacatgcagactctggat
cagaaaagagccatgaagccagctccatctggtgtccggaagataattctctctactaac
attgctgaaacaagcattactattgatgatgtggtcttcgttattgattcaggaaagatc
aaagagaagtcctttgatacactgagtcgggtttctatgttaaagacggtttggatctca
aaggccagtgttttgcaaagaaaaggaagagctggccgctgtagacctggggtttgcttc
catctcttcagtcgtctcagattcaacaatatgcaagagtttcaggttccacagctgctg
cggatgccactacaggaattgtgtctacagaccaagctgttggctccttcatcctgcccc
gttgctgaattcttatctaaagctccacagccacctcccacacatgcaatccagagtgct
gtccagatgctaaaaacaatagatgctctggaccagaatgaagacttaaccgacctgggc
ttccacctggctgatctacctgtggagccccacctgggcaaaatggtgttgtgcgctgtt
gtgctcaagtgtctggaccccattctcaccattgcctgtactctggcctatcgtgaccct
tttaccctccctgctgaaagctcccagaaaagagctgctctgcagagccgcaaacgtttc
acgtccaacaccttcagtgaccacatggccctgctcagagctttccaggcatggcagaaa
gctcgcagtgaaggctgggagagatccttctgtgaaaggaacttcctgtcccagtctacc
atggacatgattcttggcatgaggacacaactgttaggacaacttcgtgctattggtttt
gtgcgcgcccgtgggggcagcgacatccgtgatgttaatctaaactctgaaaactgggct
gtcgtgaaagcagccctggtggctggaatgtatccaaacatggttcatgtcaacaagaag
acctctttgctctccagtaacagagagaagaaggttaatttccatcctacatcagtcctg
agccagctgcagttgaaggagaaaaacagctccaaatcaggtcagaccctccccacagac
tggttgatctatgatgagatgagcagaggtcacaggatggccagtgtccgctgttgctcc
gtggtgacctccatcacagtggccatgtttggaggtggtaccaaacttctcagctccaca
ctccatgaaagtgctgtgcaaaaaagaaatgaaaatcctctggatgacatgagtgacagt
gacacagaagaattagtggagataaagattgacgactggcttgtctttgggctcgagaga
gagactgcagcactggtgtctgaactcagacagaagtggcagaacttgtttataaagagg
atccgctgtccttccaaaccctggtctcagcaggacgaggcagtcatccagaccttagtg
tctgtgctgggtgctgaggagcaggaagccggcctgcagcagcctacagggattggtcag
agacctaggcctatgacatcagaggatgggccgaggtcaacagggagaaactccaaggcc
agcccccagctgccctctcataacacaaatgacaagcctcgtcgaatgctgtcttctgac
ctgctgaagactaactcccacagcagagatgaagtctcactggccatcaagaagctgtgg
gattatccgtcttcctccagtagttcttcctgctctgtaactctggatgggcctcccgag
tctccctcaggaaagctggtcttaaagtctgtgtctcagaagcctactgtgtcatcagtc
cgatacttcattatgaagagcaacagcatcagaaacatagagatttctcagcagaaaggc
atctggtctactacaccaagcaacgagaccaaactcacccaagctttcctggcaaatagc
ttcataattctcatcttctctgtccagggatctggacacttccagggttacgctcgcatg
acatctgtcgttagccaggagagctgccaggactggggcttcatgggcctcggaggagtt
ttcagtgtagagtggatccataaagagagtcttcctttccccttcactcagcacatcctc
aacccatggaatgacaacaagagagttcaagtcagcagggatggacaggagttggagccc
caggctggcagccacttgctttctctgtgggagaggaattctgggaatcagcttcattaa
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