Xiphophorus couchianus (Monterrey platyfish): 114149229
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Entry
114149229 CDS
T05908
Name
(RefSeq) tenascin-like isoform X1
KO
K06252
tenascin
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114149229
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114149229
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xco00536
]
114149229
Glycosaminoglycan binding proteins [BR:
xco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114149229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Fn3_Dep-1_2nd
NDNF
NDNF_C
fn3_2
EGF
TSC22
PML_CC
hEGF
Motif
Other DBs
NCBI-GeneID:
114149229
NCBI-ProteinID:
XP_027880680
LinkDB
All DBs
Position
8:complement(23744915..23802956)
Genome browser
AA seq
2373 aa
AA seq
DB search
MGAQSLLGCLLLFTLMSLSTAGLVKKVLRYRRQTLSPHTEHNATLPSVGHPMVFSHVYNI
NVPASSLCSVDLEASEGTQVHPKDVTAVPPGHHVTEHTLNGENQIVFTHRINIPRQACGC
TDDFPGLKDLVSRLEMLEGEVSALRDQCSSEQLTGKLGTKPYCSGHGNYSAETCGCICDP
GWRGPNCTEAECPGRCQDRGHCVDGKCVCYKGFDGEDCALETCPVLCGAHGHCVGGVCVC
SDGFFGEDCSQSRCLNNCLGRGRCEEGDCVCDEPWTGFDCSELICPKDCYDRGRCVNGTC
HCDEGFSGEDCGEHSCPNNCRGNGFCVDGKCICTAGYSGEDCSQLTCLNDCNGRGMCFNG
LCICDSGYQGEDCSQLACLNNCNNRGQCINGRCSCDVGFHGDDCAELSCPNNCRLKGRCV
NGQCVCDEGFAGEDCSVRICPSNCYGRGECIKGRCVCHVGFVGDDCSQLSCPNNCRNRGR
CVDGQCVCDEGFSGEDCGKKACPNDCLARGHCVDGKCFCQEGYMGDDCSVLACPDNCNNR
GRCINGRCLCESGYEGESCADLSCINNCHDKGRCVNGQCFCDEGYVGEDCSEVSPPKTLT
VGEVSTETVDLSWNNEMLVTEYLITYVPTSPGGLLMEFTVPGDKTAATVKELEPGIEYLI
SVYAVLSNKRSIPVSARVVTDLPQPEGLRFKSVRETSVEVVWDQLDISFDSWEIYFRNTK
EENGKVVSTLPPSQTDFLQSGLGPGQEYEVSINIVKNNTRGPQTSKTVTTKIDSPGQVEV
KDVTDSSALISWNLPVAPVDRVTMFYMPSSDPSDETTVDVSPPDKQYNTDNLRPDTEYTV
SIISRRGEATSDPVTTTFTTALDPPTDAQAASQTADSITLEWTNSQADVSSYRVKYSPIS
GSAHGEKVFPRGSGHTTQATITGLKPGTEYGVGVTAVKNERESLPATTNAATDLDPPRDF
REVRSTETSLAVAWQKPQAKVGGYRLAYMSRDGQAEQVEIPASESTYVLPNLIPGMSYTL
TLAAERGHRRSKPVSLTASTATFTFYLAASDDREQRTPTGSEGNVTSSVILDPPESQISE
TEAEDERGTLTASSAASDGLDLSWELKTPGASDSVAVRYKDAQISRDGSEVQLPGDSRGA
GVGSPEPTAEYQTELFGIKSSQGPAVPEAVAVTAPPDVLALSIKEASMAPEPAEEQESLK
RVDKVHSESPSENDAMVSGAEIESSGMELISGLAVNVTATSVSLAWSAPDDAFDSFLVEM
VAVSAAAAQPQANELPGSFRKAEIEGLLPSTMYEITLHGLMEGRRSVPLRVFTATAGLEP
ALGNLVLSDITWDSVTASWSPTGGDFDSFVIEVINMEDLAERQNLTLSGDASSLVLSGLN
PNTNYMVGLYGMHQGSYLEPLYREATTVIRPVVGKLYVSNLTSESFTIHWNSTDRQFDGF
VLEIIDSDWLMELKEYNISQNVSAHDVTGLRPSTDYIAYLYGTYKGSRTRPVSIVASTAE
EPDLSNLVVSNVTSDRFSLSWRTREKAFDTFVVEVRESALPSQAMGRTLPGDVRATVMAG
LKANTSYDIKLYASKGGRQNTQPLLAVATTEDVPQLGPIVASSANPHYLSLYWNTLSGHF
DGFVVQVSDSEQKSDTLEFRLPGEARNITIPNLMDDTGYDIEVYGISHDRRTPSMFVHAV
TAPLPKVENLTISNVTPYGFRASWEMRQQPPPPQQEELSPSGGGFSHFHIVVTDSGWLLE
PQEFTVPGDQSHLDIWGLITGIGYEVKLTGVSESGLLSRPLTTVAVTEAEPEVDQLFVSD
ITADGFRLSWTANEDQFDRFVIKIRDSKRLAHPQEYNVRGSERTKVITGLMSGTEYEFEL
YGLTLDQRSQPITGVAQTGLSAPRGLHFTEVTDSTAVVHWSIPRFPVDNYRITYVPFEGG
SPLIVTADGGVSEMVLINMFPGKTYQVTLSSLKGLEESEPSTGTVTTALDSPRGLTVINV
TDTSALLLWQPSVATVDGYVITCSSDAVSPVVEHVSGNIVEFQMNTLVPGTLYTVGVYGV
KEAQRSASTVTKFSTDVDPPRDLMAVNVQTDSATLTWQPPTAAVSGYVLTFFSSDGAIRE
VMLSPTASSYSMSQLTASTEYSVRLQAISGGQRSRYITTTFSTSKAGQMYARPRDCAQIL
SNGETTSGLYTVYIGGEESQPVQVYCDMTTDGGGWLVFLRRQNGKLEFFRNWKSYTAGFG
NMSDEFWLGLSNLQKITSLGHYELRVDLRDNGESAYAQYDKFTLAEPRTRYKVYLGAYSG
TAGDSMSYHQGRPFSTYDNDNDIAVTNCALSYKGAFWYKNCHRVNLMGKYGDSSHSKGIN
WFHWKGHEHSIEFAEMKIRPANFNNLESRKKRS
NT seq
7122 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcacaaagtcttctgggctgccttcttctgtttactttgatgagtttatcaact
gctgggcttgtcaagaaagtcctccgctatcgacgacagactctttctccccatacagaa
cacaatgccacccttcccagtgtaggccacccaatggttttcagccatgtttataacatc
aacgttcctgcaagttccctgtgctcggtggacctggaggcatcagagggcacccaggtc
catcccaaagacgtaacggcggtccctccaggccatcacgtcaccgaacatacgcttaat
ggggaaaaccagattgtgttcacccatcgcatcaacatacctcggcaggcctgcggttgc
accgatgactttccaggcctgaaggacctcgtgagtcgcctggagatgcttgaaggagag
gtttcagctttgagggatcaatgcagcagtgagcagctcacaggtaagttgggaacaaaa
ccgtactgcagtggccatgggaactacagcgctgaaacctgtggttgcatatgtgatcct
ggctggaggggacccaactgcactgaggccgagtgtcctgggagatgccaggaccgtggt
cactgtgtggacggaaaatgtgtgtgctataagggcttcgacggagaagattgtgccctc
gagacctgccctgtgctgtgtggagcccacggccactgtgtgggaggcgtttgtgtctgt
tccgatggtttctttggcgaagactgctctcagagccggtgcttgaacaactgcctgggc
cgcggtcgctgtgaggagggagactgcgtgtgtgacgaaccttggactggctttgactgc
tccgaactcatctgtcccaaagactgctacgaccgcggacgctgtgtgaacggcacctgc
cactgcgatgagggcttcagcggggaggactgcggagaacactcttgccccaacaactgc
cgcggcaatgggttttgtgttgacggcaaatgtatttgcactgctgggtacagtggggaa
gattgctctcagctcacctgcctgaatgactgtaatggcagaggaatgtgcttcaatgga
ctttgcatctgtgactcagggtatcaaggtgaggactgcagccagcttgcgtgtctgaat
aattgcaacaacagaggtcagtgcatcaacggacggtgttcttgtgatgtcgggttccac
ggagacgactgcgccgagctttcctgtccgaacaactgccggctgaaggggcgctgtgtc
aacggccagtgtgtctgtgacgaaggctttgcaggtgaagactgtagcgtgcgcatctgc
ccatcaaactgctacggccgtggggagtgcatcaaaggacgctgcgtgtgccacgtaggc
ttcgtcggcgacgactgcagtcaactgagttgcccgaacaattgcagaaaccgcggtcgc
tgtgtcgatggacaatgcgtttgcgacgaagggtttagcggggaagactgtggcaagaaa
gcttgtcccaacgactgcctggcacgcggtcactgtgtagacggcaagtgcttctgtcag
gagggctacatgggagatgactgctctgtgctggcttgtccggacaattgcaacaacagg
gggcgttgcatcaatgggaggtgtttgtgtgagagtggatatgaaggggagagctgtgca
gacctgagctgcatcaacaactgccatgataagggccgctgcgtgaatggccagtgcttc
tgcgatgaggggtatgtcggagaggactgctctgaagtgtctcctcctaagaccctgact
gtcggggaagtcagcaccgagaccgtggacctgtcctggaacaacgagatgctggtcaca
gagtacctcatcacatatgtccccaccagtcccgggggcctcctcatggagttcactgtt
cctggagataaaactgctgccactgttaaagagctcgaacctggcattgaatacctgatc
agcgtctacgcggtcctgagcaacaagaggagcattcctgtcagcgcacgagtggttaca
gatctcccacaaccagaaggcttaagattcaagtcagtgagagaaacctctgtcgaagtt
gtctgggaccagctggacatttcctttgacagctgggagatttatttccgcaacacgaaa
gaagaaaacggaaaagtcgtgagcacccttccgccctcccaaaccgacttcctccagtct
gggctcggaccaggacaggagtatgaagtctccatcaacatcgtaaagaacaacaccaga
gggccccaaacatccaaaactgtcaccaccaagattgacagtcccgggcaagtggaggtg
aaggatgtcacggactcctcggcgctgatcagctggaatttgccggtggctccggtggac
agggtcaccatgttttacatgcccagctccgacccctcagacgaaaccacggtggacgtt
tccccaccagacaaacagtacaacactgacaatctgaggccggacacggagtacaccgtg
tcgatcatctccaggcgtggagaggcaaccagtgaccctgtcaccaccacgtttactaca
gctctggatccccctacagacgcgcaggctgcgtctcagaccgctgacagcatcactctg
gagtggaccaacagtcaagctgatgtcagcagttatcgggtgaaatacagtcccatctct
ggttccgctcacggcgagaaagtcttcccacgaggatcaggacacaccacacaggctacc
atcactggcctgaagccggggacggagtacggagtgggagtgacagctgtgaagaatgaa
agagaaagcctccctgccactacaaacgcagcaactgacctcgacccccccagagacttc
agagaggtccgctccacggagacgtcgctcgccgtcgcctggcagaaaccccaggccaag
gtcggcggctacaggctggcgtacatgtccagagacggccaggcggagcaggtggagatc
ccagcctctgaaagcacctacgtgctgcccaacctgattcccggtatgagctacacgctg
acgctggcagcagagcggggacacaggaggagcaaacccgtctccctgacggcgtccaca
gccactttcactttttatttagctgcctcagacgaccgtgaacagaggacccctacaggc
tcggagggcaatgtcactagctctgttattttagacccaccagagtcacagatttccgag
acggaggccgaggatgagcgtggaacgctgaccgcctcgagcgctgcgtccgacggactt
gacctctcttgggagctaaaaactcccggcgcctccgacagcgtcgccgtacggtataag
gacgctcagatatcgcgggacgggagcgaggtccagctccctggagattcccgtggggcc
ggagtcggcagcccagagccgacagcagaatatcaaactgagttgtttggaataaagagt
agccagggacctgcagtacctgaagctgttgcggttacagcacccccagacgttctcgcg
ctgagcatcaaagaagcctcgatggccccagagcccgccgaggagcaagagagcctcaaa
cgtgtcgacaaggttcacagtgaatcgccttcagaaaacgatgcgatggtttctggggcc
gagatcgaaagctcgggcatggagctgataagcggcctcgcggtcaacgttaccgccaca
agcgtgagcctggcgtggtcggcgcccgacgacgcgttcgacagctttttggtggagatg
gttgccgtgtcggctgcagcggcgcagcctcaagcgaacgaattgcccgggagttttagg
aaggccgaaatagaggggctgttgccctcgacgatgtatgaaataacactgcatgggctg
atggaagggaggcgatctgtaccgctcagagtttttactgcaacagcggggctggagcca
gcactagggaacctcgtcctgtctgacattacatgggacagcgtcacagcatcctggagc
cccacagggggagactttgacagctttgtcattgaggtaataaacatggaggatctcgca
gagagacagaacctcactctgtccggagatgcgtcgagcctggtcctctccggattgaat
cccaataccaactacatggttggcttgtacgggatgcatcagggctcctacctcgagccc
ctgtaccgtgaagccacaacagttattagaccagtggttggcaaactgtatgtctcaaac
ttaacgtccgaaagctttacgatccattggaacagcactgacaggcagtttgatggtttt
gttctggagataattgactcagactggctcatggagctgaaggagtacaacatttctcaa
aatgtatcggcccatgatgtcacagggctcaggcccagcactgattacatagcctacctc
tatgggacgtacaagggatctcgaacacgacctgtcagtattgttgcatcaacagctgag
gagcccgatttgtccaatctagttgtttccaacgttacctcagacagattctctctgtca
tggcgaacgagagagaaggcctttgatacgtttgtagtcgaagtcagagagtctgctttg
ccgtcgcaggcgatggggcgcactctgcccggagatgttcgcgccacggtaatggcgggg
ctcaaagcgaacacgagctacgatataaagctttatgccagtaaaggcggcaggcagaac
acacagcctctcctggctgtagctactacagaggacgtcccgcagttggggccgatagtt
gcttcgtctgctaacccccattacctcagcttgtactggaacacattgtctggccacttt
gatggctttgttgtccaggttagtgactcggagcagaagtctgacacgttggagttcagg
ctgcccggtgaagcccgtaacattacaatccctaacctgatggatgacacgggctatgat
atcgaagtgtacggtatttctcatgaccgtcgcactccatctatgttcgtccatgctgtc
acagctcctttacctaaagtggaaaacttgaccatatccaacgtaaccccctacggtttc
agagcatcctgggaaatgaggcagcagccaccgccgccgcagcaggaggagttatccccc
tctggtggcggttttagccactttcacatagtggtgacagactcaggctggctgctggag
cctcaggagttcaccgtgccaggagaccagagtcacctggacatctggggcctcatcacc
ggcattggctatgaggtcaagctaaccggcgtgtctgagtcggggcttctctctcggccc
ctgactacggtggctgtgacagaggcagagccggaagtggaccagctcttcgtttcggac
atcacggccgacgggttccgcctgtcgtggacggccaacgaagaccagtttgacagattt
gtgatcaaaataagagacagtaaaagattagctcatccgcaggagtacaacgtccgcggc
agtgagcgaacaaaggtcataactgggctcatgagtggcaccgagtatgagtttgagctc
tacggcctcacgttggaccagcgatcccagcctataacgggggttgctcagacaggtctg
agtgcgccgagaggactgcatttcaccgaggtgacggactccacggctgtagttcactgg
tccattccacgttttccggtggataactacaggatcacctacgtgccctttgaaggagga
agcccattgatcgtgacggcggacggcggcgtgtctgagatggtgctgatcaatatgttt
cccggaaagacgtaccaagtgacgctgagttccctgaagggtctggaggagagtgagccc
agcaccggcacagttaccacagctttggacagtccgcgaggtctgactgtcatcaacgtc
acggacacgtcggctctgctgctgtggcagccatctgtagccactgtcgacggctacgtc
atcacctgcagctccgacgcagtgtccccagtggtggagcatgtttctgggaacatagtg
gagttccagatgaacacattggttccaggaactctctacacggttggggtttatggtgtg
aaagaagctcagaggagtgcgtccactgttactaaattctccacggacgtggatcctcct
cgcgacctgatggctgttaacgttcaaacggacagcgccactctgacatggcaaccccct
accgctgccgtctctggctatgtgctaaccttcttctcttctgatggtgcaatcagagag
gtaatgctaagccccacagcgtcgtcttacagcatgtctcagctcactgcctcgacagag
tacagtgtccgccttcaggccatctccggaggtcagaggagtcgctacataaccaccacc
ttttccaccagtaaagctggacagatgtacgctcgcccccgggactgcgctcagattctg
tcgaatggggagaccacctctggtctgtacaccgtctacataggaggagaggagagccag
cccgttcaggtttactgtgacatgaccacagatggcggaggatggttggttttcctcagg
cgccagaacggaaagctggaattcttcaggaactggaagagctacacagctggcttcggg
aacatgagtgatgagttctggctgggtctctccaacctccagaaaatcacatctctggga
cattacgagctgagggtggacttgcgagacaacggagagtcggcctacgcgcagtatgac
aagttcacgcttgccgagccgagaacacgatacaaagtctacttaggagcttatagtgga
acagcaggcgactccatgtcctaccatcagggccggcccttctccacctacgacaacgat
aacgacatcgctgtgaccaactgcgccttgtcctacaaaggtgccttctggtataaaaac
tgccatcgtgtgaacctcatggggaaatacggtgacagcagtcacagtaaggggataaac
tggttccactggaagggccacgaacactcgatcgaatttgcagaaatgaagattaggcca
gccaacttcaataacctggagagcagaaaaaagcgatcgtaa
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integrated database retrieval system
