Xiphophorus couchianus (Monterrey platyfish): 114149242
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Entry
114149242 CDS
T05908
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xco03009
]
114149242 (ddx55)
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114149242 (ddx55)
Ribosome biogenesis [BR:
xco03009
]
Eukaryotic type
Pre-60S particles
Helicases
114149242 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
SLFN-g3_helicase
Helicase_C_2
Cas3-like_C_2
SBF_like
YbjM
Motif
Other DBs
NCBI-GeneID:
114149242
NCBI-ProteinID:
XP_027880720
UniProt:
A0A3B5LRC6
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Position
8:complement(25466344..25474200)
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AA seq
588 aa
AA seq
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MENITDGTWETLSVQLNEKILQTLEEMKFTYMTPVQSACIPLFMNNKDVAAEAVTGSGKT
LAFVIPIIELLLKREEKLKKKQVGALVITPTRELALQISEVMGMFIQKFPEFTQILLIGG
SNPAEDVEKFKEHGGNIVIATPGRLEDMFRRKSEGLELASAVRSLDVLVLDEADRLLDMG
FEASLNSILSYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGQAASATQKTPA
RLSNYYTTCRADDKFNHLVAFLRQHKHEKQLVFFSTCACVEYFGRALESLVKKVTIHCIH
GKMKNNRSSIFSDFRALKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASAFVHRCGRTA
RIGNHGNALVFLLPMEEPYVNFLSINQKCPLQKMSAIKDVVDVLPKVKAMALADRAMFDK
GMRAFVSYIQAYAKHECSLIFRVKDLDFVSLANGFALLRLPKMPELKGKTFPDFVETTVD
TDSIRYKDKNRQKQRQKMLAELKDREKTELPKKNFVKNKAWSKQKCKKERKKKRAAKRKH
DEDSDMDEEYMKELLEDTRLLKKLKKGQISEEDFEQQLTNSKQEAGGP
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggagaacattacagacgggacatgggaaaccttatctgtccaactaaacgagaagatt
ttacaaacacttgaggaaatgaaatttacttacatgacacctgtacagtcggcttgtatt
ccactgttcatgaacaataaagacgtcgctgctgaggcggtcaccggcagcgggaagact
ttggcttttgtcattcctattatagagctgctgctgaaacgcgaggagaaactcaagaag
aagcaggtcggtgctctggtgatcactcccacacgagaactggccctgcagatcagtgaa
gtgatgggaatgtttatccagaagtttccagagttcacgcagattttgctgattggtggc
agcaacccagcagaagacgtggagaagtttaaagagcatggcggcaacattgtgattgcg
acgcccggccgcctggaggacatgttcaggaggaagtcagaggggctggaactggccagc
gcagtccggagcctggatgttctggttctggatgaggctgacaggctgctcgacatgggc
tttgaggccagcctgaacagcatcctgagctacctgcccaaacagagacggacgggcctg
ttctcagccacccagactcaggagctggagaagctggtgagggccggcctcaggaacccc
gtccgcatcaccgtcaaagagaagggtcaggctgcctcggccacccagaagaccccggcc
cgcctctccaactactacaccacttgcagagcagacgacaagttcaaccacctggtggcg
tttctaaggcaacacaagcatgagaagcagctggtcttcttcagcacctgcgcttgtgtg
gagtacttcggccgagccctggagtcgctggtcaagaaggtcacgatccactgcatccac
ggcaagatgaaaaataaccgcagcagcattttttcagacttcagagccttaaagagcggg
atcttggtgtgcaccgacgtcatggccagaggcatcgacatccccgatgtgaactgggtt
ctgcagtacgatccccccagcagcgccagtgcttttgtgcatcgatgcgggagaacggcg
cgtatcggtaaccatggcaacgccctcgtcttcctgctgccaatggaggaaccctatgtc
aacttcttgtccatcaaccagaaatgcccgctgcagaagatgtctgctataaaggacgtg
gtggacgtgctgcccaaggtgaaggccatggccctggctgaccgcgccatgttcgataaa
ggcatgagggcctttgtgtcgtacatccaggcttacgccaaacacgaatgcagcctcatc
ttcagagtaaaagatctggattttgtgtccctggccaacggcttcgcgctgctccgcctg
ccgaagatgcccgagctgaaggggaaaacgtttcccgacttcgtggagacgacggtggac
acggacagcatccgctacaaggacaaaaacagacagaagcagaggcagaagatgctggcc
gagctgaaggacagagagaagacggagctgcccaagaagaactttgtcaagaacaaggcc
tggtccaagcagaagtgcaagaaggagcgcaagaaaaaacgcgccgccaaaaggaaacac
gacgaggactccgacatggatgaagaatacatgaaggagcttttagaagacactcgcctc
cttaagaaactaaaaaaaggccagatcagcgaggaagacttcgagcaacagctcacaaac
tcaaagcaggaagcaggcggaccataa
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