Xiphophorus couchianus (Monterrey platyfish): 114149460
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Entry
114149460 CDS
T05908
Symbol
clstn1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xco04515
]
114149460 (clstn1)
Cell adhesion molecules [BR:
xco04515
]
Cadherins
Cadherin related
114149460 (clstn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
CDC45
Laminin_G_2
EphA2_TM
V_ATPase_I
Cadherin_C_2
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
114149460
NCBI-ProteinID:
XP_027881147
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All DBs
Position
1:complement(12552501..12588291)
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AA seq
981 aa
AA seq
DB search
MRFRGNKQFASAVGLVLGLLCAVEAAKVNKHKPWIETTYHGIVTENDDKVILDPPLIALD
KDAPLRYAESFEVTLTEEGEICGFRIHGQNVPFEAVVLDKSTGEGVIRAKEKLDCELQKE
HTFTIQAYDCGEGPDGANMKKSHKATVHIQVNDINEYSPVFKEKTYKATVIEGKKYDNIL
KVEAVDADCSFQFSQICSYEIVTPDVPFTIDKDGFIKNTEKLSYSKERMYKLTVTAYDCG
KNRASEDVLVKISIKPTCRPSWQGFNKRTEYEPGTGSLALFPSMHLETCDVPITSVRASI
ELETNHIGKGCDRDTYSEKSLHKLCGASSGTVELLPAPSSSANWTVGLPTDNGHDSDQVF
EFNGTQAIKVPDGLVNTNLKEPFTLSVWMRHGPGSHEKETILCNSDKTDMNRHHYSLYVH
NCRLILLLRQDPSEAENYKPAEFHWKLDQVCDKEWHHYVLNVEFPTVSLFVDGTAFEPFM
VTEDYPLHPSKIETQLTVGACWQENSGHDNDTEAGPETTSGGNARMAQFFRGNLAGLIIR
SGKLENKKVIDCLYTCKEGLDVQLPEEVASAVKVDFNPNQSSLTVEGDDIGAFDKVMQHI
SYLNSRQFPTPGIRHLRISTTVKCLNEDACVAVPDAEGYVMVLQPEEPKISLSGIDHFAR
SAAEFESQEGVTLFPELRIVSTITREMEADAESEAAEGTDDDPTVQETVVSEEIMHNLDS
CEVSVVGDELDGEHESLEVDVSQLQQRALEMSSSNLGLVITGVNTMANYEQVLHLIRYKN
WHTEALFDRKFKLVCSELNGRYISNDFKVEVNVIHTSNPVEHANNAMVQPNFINPVHHAS
VDLSGHNLVNAHQASVVPSAATIVIVVCVSFLVFMIILGVFRIRAAHQRSMRDQESGKEN
EMDWDDSALTITVNPMETYEDQHSSEEEEEEEEESEDGEEEDDITSAESESSEDEEGGEP
EDQQRTSRQQQLEWDDSTLTY
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgcggttccgagggaataaacaatttgcatccgcagtcggactggtcctcggactatta
tgcgcggtggaggcagctaaagtcaataagcacaagccgtggatcgagacgacgtaccat
gggattgtgacggagaacgatgacaaagttattctggacccccctctaattgcgctggac
aaagacgctcctttacgctacgcagagagttttgaggtgaccctcaccgaagaaggtgag
atttgcggcttcaggatccacgggcagaacgtccccttcgaggcagtggtcctggacaag
tccactggcgagggggtcatcagggccaaggagaagctcgactgtgagctgcagaaggag
cacaccttcaccatccaggcctatgactgtggagagggtcctgatggcgccaacatgaag
aaatcacacaaggcgaccgtccacatccaggtgaacgacatcaacgagtattccccagtg
ttcaaggagaagacgtacaaagccaccgtgatcgaggggaagaaatacgacaacatcctg
aaggtggaggcggtggatgccgactgctccttccagttcagccaaatctgcagctacgaa
attgtcacgcccgatgttcccttcaccatcgacaaagacggctttattaagaacactgag
aagctgagctacagcaaagagcgcatgtacaagttgaccgtgaccgcctacgactgcggg
aagaaccgagcttctgaagatgtgttggtcaaaatcagcataaagcccacctgcagaccc
agctggcaaggcttcaataagaggactgagtatgaaccgggcaccggtagcctggctctt
ttccccagcatgcacctggagacctgcgatgtgcccatcacctctgtccgggccagtatt
gaactggaaaccaaccacatcggaaagggctgtgaccgtgacacgtactctgagaagtca
ctgcacaagctgtgtggagccagctccggcaccgtggagctccttcctgctccgagcagc
tctgccaactggacggtgggactgcccactgataatggacacgatagtgaccaggtgttt
gagttcaacggcacccaggccatcaaggtgcccgatggtttggtgaacaccaacctgaag
gagcccttcaccctctctgtgtggatgaggcacggacccggctcccacgaaaaggagacg
atcctctgcaactcagacaaaacagatatgaacagacatcactactccctctacgttcac
aactgcaggctaatccttctcctccgccaggatccgtccgaggcggagaactacaaacca
gcagagttccactggaaactcgaccaggtgtgtgacaaagagtggcatcattatgtgctc
aacgtggagttccccactgtttctctgtttgtggatgggacggccttcgagcccttcatg
gtcacagaggactacccactgcacccctctaagatcgagactcagctcacagttggcgcc
tgctggcaagaaaactcgggacatgacaatgacactgaggcgggccctgagaccacctca
ggcgggaatgcccgaatggctcagtttttccgaggaaaccttgcaggcctgatcatccgc
tccggcaagctggagaacaagaaggtgatcgactgtttgtacacctgcaaagaaggcctg
gatgtgcagctgcctgaggaagtagcttcagcggtgaaggttgatttcaaccccaaccag
tcctctctgacagtggaaggcgacgacatcggcgcctttgacaaagtcatgcagcatatc
tcctacttaaactcccgccagttcccaaccccaggcattaggcaccttcgcatctccacc
actgtcaagtgtttgaacgaggacgcctgcgtggcggtgccagacgctgaaggctacgtg
atggtgctgcagcccgaggagccgaagatcagcctgagcggcattgaccacttcgcccgc
agcgccgctgaatttgagagccaggaaggcgtgactctgttccccgagcttcgcattgtc
agcaccatcacccgggaaatggaggccgacgcagagtctgaagcagcagaaggcactgac
gatgaccccacagttcaagagacagttgtgtcagaggagatcatgcacaatttggactcg
tgtgaagtgtctgtggtgggagatgagctggacggcgagcatgagagcctggaggtggat
gtctctcagctgcagcagcgcgccctggagatgagctcatctaacctgggcctcgtcata
actggtgtgaacactatggccaactatgagcaggtcctgcacctcatccgctacaagaac
tggcacaccgaagcgctctttgacaggaaattcaagctggtctgctctgaactcaacggt
cgctacatcagcaacgacttcaaggttgaggttaatgtgatccacacgtccaatcctgta
gagcacgccaacaatgccatggtgcagcccaacttcatcaatcctgtccatcatgcctct
gtcgatctgtctggtcacaacctggtcaatgctcaccaggcttcggtggttcccagcgct
gccaccattgtcattgtggtgtgtgtgagcttcctggtgttcatgataatcctgggcgtg
ttccgcatccgagctgcacaccagcgctccatgagagaccaggagagcggcaaggagaac
gagatggactgggacgactcggccctcaccatcacagttaaccccatggagacgtacgag
gaccaacacagcagcgaggaggaggaggaagaggaggaagagagcgaggacggggaggag
gaagacgacatcacaagcgctgagtcagagagcagcgaggacgaggagggcggtgagcca
gaagaccagcagcggaccagcagacagcagcagctggagtgggacgactccaccctcacc
tactga
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