Xiphophorus couchianus (Monterrey platyfish): 114149471
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Entry
114149471 CDS
T05908
Name
(RefSeq) zinc finger BED domain-containing protein 1-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xco03000
]
114149471
04121 Ubiquitin system [BR:
xco04121
]
114149471
Transcription factors [BR:
xco03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
114149471
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
114149471
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
zf-BED
HP1454-like_C
XPG_I_2
Phasin_2
Motif
Other DBs
NCBI-GeneID:
114149471
NCBI-ProteinID:
XP_027881175
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Position
8:4580211..4582365
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AA seq
592 aa
AA seq
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MWEHVDLISPNKVRCLLCSKELGYNNNTSSMLRHYRALHENREETGASPSQATRKQELDE
VLVSMIVKDTQPFTIVDDVGFGTFVSKLDPKYVLPTRQALKAMVEAKYEFAKEHAKAKVE
KVVAVSLTSDMWTSINIDAYLAVTCHFVEENEKLSSVLLGVQAFPQSHTAENIACVKASL
MEEWGISGKVTCMVTDGAPNMVACVRELKLRHHICVAHTLNLVVKRAFDQHPVLSGLRAK
ARKLVGYFRSSTTAKVCSFLLFQYIMLIVCLYSYCSDLMAYSSVSLKEKLKRVQLQLGMQ
ATKLMQEVETRWNSTYLMLQRLVELREPVGAALAGLHTDIPFFTASEFDIVVACLSSLSP
FYDASTELSAEEHVSASKVIPLLKMIAKALQEEDTKSAPAVAVEIGEQLIRQLREKLHML
QSMSILSLATLQDPQFKLIAFFSNTKAAEAVKRLTSECATVIRRNTEENTHEIPQASTSQ
EFTGGSRLWQRLDTSVMEAKRTQNVSEDATVEIQRYLSEANISRLENPLEYWANHRSLYP
NLYKLALIYLCTPASSVPCERVFSKAGEVVSKKRNRLKPKTVEKLLFLNKNA
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgtgggaacatgtcgatttgataagccctaacaaggtgaggtgtttattgtgctccaag
gagttggggtacaataataacacctcatccatgctaaggcactaccgtgccttgcatgag
aatagggaggaaactggagcttcacccagccaagccaccagaaaacaagagctggatgaa
gttctagtctccatgatagtgaaggatacccagcctttcactattgtggatgacgttgga
ttcgggacatttgtgtctaagctggatcccaaatatgttctccctacaaggcaggctctg
aaggccatggtggaggccaaatatgagtttgctaaggagcacgctaaggctaaagtagag
aaggtggttgctgttagccttacatcagatatgtggacatccatcaacattgatgcctac
ctggcagtgacatgccactttgtggaggagaacgaaaagctgagttcggtgttgttggga
gtgcaggcattcccccagtctcacactgctgaaaatattgcttgtgtgaaagcctccctg
atggaggaatggggaatctcaggcaaggtgacatgcatggtcaccgatggtgctcctaat
atggtggcatgcgtgagagagctgaagcttcgccaccacatttgtgttgctcacaccctc
aatcttgttgtgaagagggcgtttgaccagcaccctgtgctctctggcctccgggccaaa
gcaaggaagctggttggctactttagaagcagcaccactgctaaggtatgctcttttctt
ttattccaatatataatgttaatagtttgtctgtactcctactgcagtgacttaatggcc
tactcttctgtatctttaaaggagaagcttaaacgagtgcagcttcagctgggcatgcaa
gcaaccaagctgatgcaggaggtggaaacaagatggaacagcacctacttgatgctgcaa
cgtctggtggagttgagggagccagtaggagcggcattggctggattacacactgacatt
ccctttttcactgccagtgagtttgacattgttgtagcgtgcctttcttcactctctcct
ttctatgacgcctccacggagctctctgcagaagaacacgtgtcggcatcaaaagttatc
cccctcctgaagatgatagcgaaagcccttcaggaggaagacaccaagtcggcacctgca
gtagcagtggaaataggagagcagctcatcagacagctcagggagaagctgcacatgctc
cagtcaatgagcatcttgtcgctggctacactccaagacccacaatttaaacttatagca
tttttcagcaacacaaaagctgctgaagcagtgaagcgcttgacttcagagtgtgccacc
gtcatccgacggaacacagaagagaacactcacgagattccccaggcttccacctctcaa
gaattcactggaggtagcagactttggcaaagattggacactagtgtcatggaggcaaag
aggactcaaaatgtgtcagaagatgccaccgtagagatccagcgctacctgtcagaggca
aacataagcaggctggagaaccccctggagtactgggctaatcatcggtcactgtacccc
aatctgtacaaacttgcacttatttatttatgcaccccggcatcatctgtgccatgtgag
cgtgtcttttcaaaggctggagaagtagtgtcaaaaaagagaaatcgtttgaaaccaaaa
actgtggagaaattgttgtttcttaataaaaatgcatga
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