Xiphophorus couchianus (Monterrey platyfish): 114150055
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Entry
114150055 CDS
T05908
Name
(RefSeq) thrombospondin-4-B-like
KO
K04659
thrombospondin 2/3/4/5
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04145
Phagosome
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114150055
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
114150055
09144 Cellular community - eukaryotes
04510 Focal adhesion
114150055
09142 Cell motility
04820 Cytoskeleton in muscle cells
114150055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114150055
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xco04147
]
114150055
00536 Glycosaminoglycan binding proteins [BR:
xco00536
]
114150055
Membrane trafficking [BR:
xco04131
]
Endocytosis
Phagocytosis
Opsonins
114150055
Exosome [BR:
xco04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
114150055
Exosomal proteins of colorectal cancer cells
114150055
Exosomal proteins of bladder cancer cells
114150055
Glycosaminoglycan binding proteins [BR:
xco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114150055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
EGF
EGF_MSP1_1
cEGF
DUF7630
Motif
Other DBs
NCBI-GeneID:
114150055
NCBI-ProteinID:
XP_027882044
LinkDB
All DBs
Position
8:19707409..19724308
Genome browser
AA seq
941 aa
AA seq
DB search
MILWTFFILLSQLLLNLCLHAEAQALAVYNLLTSPDCLPDLLQGGLAEQGVNEAFILTTF
KLQPKTGTTLFGLFNPRDNSKYFEFTVMGKLNRAVLRYLRTDKRMSSVSFNNLVLADGQQ
HRLLFHLKGLQQQGPGGVELHLDCRLVETVRDLPAVFQGLPAGYGMVELKTMQARDQESL
DELKLVVGDSFENVASLQDCHFQQRDSVQTLGVNTKQLSNQMLELTKVINELKDVLIQQV
KETSFLRNTISECQACGLGGTEVVKPRCAPGVCFRDDMCIETANGVECAPCPDGYTGDGF
NCDDVDECQFNPCFPGVKCVNTAPGFRCDACPLGYVGLPVEGVGILFAQTNKQVCDDIDE
CKGPDNGGCTANSICHNSVGSFYCGSCKTGFTGDQVRGCEPELSCGNSLTNPCDINAECI
RERDGTISCQCRIGWAGNGYLCGKDTDIDGYPDEKLKCKDANCRKDNCIFVPNSGQEDAD
RDGQGDACDDDADGDGIPNEQDNCRLKPNVDQRNSDADSHGDACDNCRMVSNPDQRDTDG
DGKGDACDDDMDGDGVRNFLDNCQRVQNRDQLDRDGDGVGDACDSCPDIPNPNQSDVDND
LVGDSCDTNQDSDGDGHQDTKDNCPLVINSSQQDTDKDGLGDECDDDDDNDGIPDILPPG
PDNCRLVPNPDQIDDNNDGVGDICESDFDQDKVIDRIDNCPENAEVTLTDFRAYQTVVLD
PEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTVTDDDYAGFI
FGYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSRSGPGEHLRNSLWHTGDT
NDQVRLLWKDPRNVGWKDKVSYRWYLQHRPQVGYIRVRFYEGTQLVADSGVTIDTTMRGG
RLGVFCFSQENIIWSNLKYRCNDTIPEDFQEFSAQHTVDSI
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgattttgtggacattcttcattctgctctcgcagctgttattaaacctgtgcttacat
gcagaggcccaggctttggcagtctacaatctgctcacctcgcctgactgcttgccagac
ctgctgcagggaggtttggcagaacaaggggtgaacgaggctttcatcttaaccaccttc
aagctgcagcccaagactggaaccacactgtttggcctgttcaacccaagggacaacagc
aagtattttgagttcaccgtaatggggaagctcaaccgggctgtgttacgttacttgcgg
actgacaagagaatgagctctgttagcttcaacaaccttgtgctggcggacggccagcag
caccggctgttgttccacctgaagggtctgcagcagcaggggccaggcggggtggagcta
catctggactgcaggctggttgagacggtccgggatcttcctgccgtcttccagggtttg
ccagcagggtacggcatggtggagctaaagacaatgcaagccagggatcaggagagctta
gacgagctgaaactggtggttggggactcgtttgagaatgttgcatcattgcaagactgt
cattttcagcaaagagattcggttcaaactttaggggtcaacacaaagcagctgtcaaat
caaatgctggagttaacaaaggtgataaacgagcttaaagacgttctcatccagcaggtt
aaggaaacatcttttctccgaaacactatttcagagtgtcaggcttgtggtctgggtgga
acagaggtggtgaaaccgagatgtgctcctggtgtctgtttccgcgatgatatgtgcatt
gagacagcaaatggcgtggagtgtgcaccctgtcctgatgggtacactggagatggcttc
aactgtgatgatgttgatgagtgccagtttaacccctgcttccctggagtgaagtgcgtt
aacactgcccctggcttccgctgcgacgcctgcccgctgggttacgtcggcctgccagtg
gagggtgtgggcattttgttcgctcaaaccaacaaacaggtctgcgatgacattgatgaa
tgcaaaggacccgacaatggtggctgtactgcaaactcaatctgtcacaactctgtgggc
tcattttactgtggcagctgtaagactgggttcacaggagatcaggtgaggggctgtgag
ccagagctcagctgtggaaacagcctgaccaacccctgcgacatcaacgccgagtgcatt
cgagaaagagacggcactatttcttgtcagtgtagaattgggtgggcgggcaacggatac
ctgtgtgggaaagacacggacattgatggatacccggatgaaaaactcaagtgcaaggac
gcaaactgtagaaaggataattgcatctttgttcctaactctggtcaagaggacgctgac
agggatggccagggagacgcctgtgatgacgatgcagatggtgacggtattcccaatgag
caggacaactgccggttgaagcccaacgtggatcagaggaacagtgatgcagacagccat
ggcgatgcctgtgacaactgtcgtatggtgagcaatcccgaccagcgggacactgacgga
gacggcaaaggagatgcctgcgacgatgacatggacggagacggtgtgagaaatttcctg
gacaactgccagcgtgtccagaacagagaccagctggacagggatggagacggcgtggga
gatgcttgcgacagctgccctgacatacccaacccaaaccagtctgatgttgataatgac
ctggttggagactcgtgcgacacaaaccaagacagcgatggcgatggtcaccaggatacc
aaggacaattgtccactagtgattaacagctcacagcaggacactgacaaagacgggctg
ggagacgaatgtgacgatgatgatgacaatgacgggatcccagatattctaccgccagga
ccagacaactgcaggctggtgcccaaccccgaccagatcgatgacaacaatgatggcgtt
ggagatatctgcgagtccgactttgaccaggacaaagtgattgaccggattgacaattgc
cctgagaacgcagaggtcaccctgacagacttcagggcctaccagacagtggtgctggac
ccagagggagatgcacagatcgaccccaactgggttgtcctcaaccagggaatggaaata
gttcagaccatgaacagtgaccctggacttgctgttggatacactgctttcagtggagtc
gactttgaggggacttttcacgtgaacacggttaccgacgacgactatgccggcttcatc
tttggctaccaggactcctcgtccttctatgtggtgatgtggaagcagactgagcagact
tactggcaggcaacccctttcagagctgtggccgagccaggcatccagcttaaggctgta
aagtccaggtcaggccctggggaacacttgagaaactcactgtggcacacaggagacacc
aacgaccaggtccgtctgctgtggaaggacccgaggaacgttggctggaaggacaaagtt
tcctaccgctggtatttgcagcaccgtccacaggtcggatacatcagagtgaggttttac
gagggaactcagctggttgcagattctggtgtgactatcgacacaaccatgagaggagga
cgactcggcgtgttctgcttctcacaagaaaacatcatctggtccaatctgaaatatcgc
tgcaacgacaccatcccagaggatttccaggagttcagcgctcaacacaccgttgactca
atctaa
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