Xiphophorus couchianus (Monterrey platyfish): 114150349
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Entry
114150349 CDS
T05908
Symbol
lsm7
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7 isoform X1
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03018
RNA degradation
xco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114150349 (lsm7)
09123 Folding, sorting and degradation
03018 RNA degradation
114150349 (lsm7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114150349 (lsm7)
03041 Spliceosome [BR:
xco03041
]
114150349 (lsm7)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114150349 (lsm7)
mRNA degradation factors
5'-3' decay
Lsm complex
114150349 (lsm7)
Spliceosome [BR:
xco03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
114150349 (lsm7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
InhA-like_MAM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
114150349
NCBI-ProteinID:
XP_027882502
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All DBs
Position
9:12110503..12112248
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AA seq
108 aa
AA seq
DB search
MKNGFSSDKEKKKKESIFDLSKYIDKTIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYM
RDPDDQLKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq
327 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacgggttttccagtgacaaagagaagaagaagaaggaaagcatcttcgacttg
tctaaatacatcgacaagacaattcgtgtgaagttccaaggaggaagagaggccagcggc
gttctgaaagggtttgatccactgctaaacctggtgttggacggcacgatcgagtatatg
cgagatccagatgaccagctgaagctgacagaagacacccggcagctggggctggtggtc
tgcagaggaacctccgtagtgctgatctgtcctcaggatggcatggaggccataccaaac
cccttcatacagcagcaggatggctaa
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