Xiphophorus couchianus (Monterrey platyfish): 114150585
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Entry
114150585 CDS
T05908
Name
(RefSeq) transcription factor SOX-6-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xco03000
]
114150585
Transcription factors [BR:
xco03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
114150585
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Activator_LAG-3
Motif
Other DBs
NCBI-GeneID:
114150585
NCBI-ProteinID:
XP_027882888
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Position
2:27751408..27896786
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AA seq
777 aa
AA seq
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MMSSMRATPPFHPPPSEEADATDQDNNAAWAGDERDGLTETVPGTTPPRDRPCPDEPPLA
GKKTPADIIEWETAVMDNDSSKGCSGYPYRTNSTSPSKPEECSRDRGESVIGLAFGTPER
RKGSLADVVDTLKQKKLVELTKSEQDEPSCMVRLLSKDWKDHVEGLNAGELLGEVKGTPE
SLEEKERQLSTMIGQLISLREQLLAAHDEQKKMAASQLEKQRQQMELARQQQEQIARQQQ
QLLQQQHKINILQQQIQVQGHMPPLMIPLFPHDQRSLAAAAVAQQGFLFPPGMSYKPGEN
YPMQFIPSTMAAAAASGLSPLQLQQLYAAQLASMQISPGAKMAPLPQAPNSSGPLSPSNL
KSEKRASSPVTQIKEEGSTQPLNLSARPKMTEPYRSPTSPTQSLLPGNKTSPGGLGKGRI
PSPIPSMGRNASLDILSSLSSTALFGDQDAVMKAIQEARSMREQIQREQLLHQQQQPGHQ
SLEAKLSALSSMNLNNSNKERLHYETLSQHLGKLGEDTGKMVHRVIDLTRPEDLDGNNIT
EARVFREARGRNSSEPHIKRPMNAFMVWAKDERRKILQTFPDMHNSNISKILGSRWKAMT
NQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQLMRSRRQEMRQ
FFVGPQPQISLGNSSGGVGVYPGAITMATTATPSPHLTSDCSSTSASPEPNIPVIQSTYG
VKSEPGGGSNGTGVGAMDLPGDPANGDDDMDMYEDFEDEPKSDYSSEHETREVVSAN
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttccatgcgagcaacgcctcctttccacccaccgccatccgaggaggcggac
gccacggatcaggataacaacgcggcctgggccggagacgagcgggacggcctgacggag
acggtccccggcacgaccccgccacgcgaccggccctgcccggacgagcccccgctcgcc
gggaagaaaacgccggccgacatcatcgagtgggagacggccgtgatggacaatgatagc
agcaaaggctgctctggctacccttaccggactaactctacctctccttccaagccggag
gagtgttccagggatcgaggggagtcggtgatcggcctcgccttcgggactcccgagcgg
cgtaaaggaagtctggcagacgtggttgacacactgaaacagaagaagctcgtagagctg
accaagtcggaacaagacgaaccgtcctgcatggtgaggttactttccaaggactggaag
gatcacgtcgaaggcctcaacgccggcgagctgctgggggaggtcaaaggtacgcccgag
tcgctcgaggaaaaggagcgccagctgtccaccatgatcggtcagctgattagtctgcgg
gagcagctgctggccgcccacgacgagcaaaagaagatggccgcctcacagctagagaag
cagagacagcagatggagttggccaggcagcagcaggagcagattgccagacaacagcag
cagcttttgcagcagcagcacaagatcaacattctccagcaacagattcaggtccagggt
cacatgcctcctctgatgatccccctgttcccacacgaccagcgctctctggctgccgcc
gccgtcgcacagcaaggcttcctcttcccgcccggcatgtcctacaagccaggtgagaat
tacccaatgcagttcattccgtcaacaatggcagccgcggcggcctctggactcagcccg
ctacagctgcagcagctgtacgccgcacagctggcaagcatgcagatctcgccgggagcc
aagatggcgcccctcccgcaggctcccaactcctccggtccgctttcaccctccaacctc
aagagcgagaagcgagcgtccagccccgtgactcagattaaggaagaaggatccacacag
ccattgaacctctccgccagaccgaagatgaccgagccgtatcgctctccgacgtcgccc
acgcagagcctgctgcccggaaacaagaccagcccaggtggcctgggcaagggtcgcatc
ccgagccccatccccagcatgggccgaaacgcctccctggacatcttgtccagccttagc
tcgacagcgttgtttggggaccaagacgcggttatgaaagccatccaggaggcgcggagc
atgagggagcagatccagagggagcagctcctccatcagcagcagcagccgggccaccag
agtctggaggccaagctgtccgcactcagcagcatgaacctcaacaacagcaacaaggag
cggcttcactacgagactctcagccagcatctggggaagcttggggaggacacagggaag
atggtccatcgagtcatcgacctgacaagaccagaggatctggatgggaataatatcaca
gaggcacgagtgttcagagaggcacgaggcaggaacagcagcgagccccacatcaagagg
cccatgaacgccttcatggtttgggctaaagacgaaaggaggaagatcctgcagactttc
cccgacatgcacaactccaacattagcaagatcctgggttctcgctggaaagccatgacc
aatcaggagaagcagccgtactatgaggagcaggcccgcctcagcaagatccacctggag
aaatatcccaactacaagtacaagccgcggcccaagaggacctgcatcatcgacggcaag
aagctgcgcatcggggagtacaagcagctgatgcgctcgcggcgtcaggagatgaggcag
ttctttgtggggcctcaaccccagatttctctgggcaacagctcaggaggcgttggagtt
taccctggcgctatcaccatggcgacaacggcgacgccctccccgcacctgacctcggac
tgctcgagcacgtcagccagccccgagcccaacatccccgtcatccagagcacgtacggg
gtgaagtccgagcccggcggcggcagcaacggtacgggcgtcggcgccatggatctcccc
ggtgaccccgcaaacggagacgacgacatggacatgtacgaggactttgaggacgagccc
aaatcggactatagcagcgaacacgagacgcgggaagtggtcagcgccaactga
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