KEGG   Xiphophorus couchianus (Monterrey platyfish): 114150719
Entry
114150719         CDS       T05908                                 
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03018  RNA degradation
xco03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    114150719 (lsm4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    114150719 (lsm4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xco03019]
    114150719 (lsm4)
   03041 Spliceosome [BR:xco03041]
    114150719 (lsm4)
Messenger RNA biogenesis [BR:xco03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     114150719 (lsm4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     114150719 (lsm4)
Spliceosome [BR:xco03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    114150719 (lsm4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 114150719
NCBI-ProteinID: XP_027883152
LinkDB
Position
9:27125981..27128605
AA seq 188 aa
MHVFSSRGQHYKIRSPTIRRRGRSVGGKSRVIYRRRQEIETNITIMLPLSLLKTAQNHPM
LVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEI
IDMVKEEVLSKGRGRGGSQQNKQQGKGRGGPGRGVFGSRGRGMSGPGRGQQPPTDKKTGK
PQGMKNQH
NT seq 567 nt   +upstreamnt  +downstreamnt
atgcatgttttcagcagcagggggcagcactataagatacggtcccctaccattaggaga
cgaggaagaagtgtaggtgggaaaagccgtgttatttatcgcaggagacaagaaatagaa
acaaatataaccataatgcttccattgtctctgttgaaaactgcccagaaccatcccatg
ctggttgagcttaaaaatggggaaacctacaacggccacctggtgagctgcgacaactgg
atgaacatcaacctgagagaagtcatctgcacatccagggatggagacaagttctggagg
atgcctgagtgctacatccgaggaagcacgatcaagtacctgcgaatcccagatgagatc
atcgacatggtgaaggaggaggttctgtcgaaggggcgcgggcgtggcggctcccagcag
aacaagcagcagggcaaaggaagaggtggacccggccgaggtgtgtttggcagccgcggc
agagggatgtccggtcctgggcggggccagcagccgccgaccgataagaaaacaggcaaa
cctcagggaatgaagaaccagcactga

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