KEGG   Xiphophorus couchianus (Monterrey platyfish): 114150828
Entry
114150828         CDS       T05908                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 4B-like
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03250  Viral life cycle - HIV-1
xco03272  Virion - Hepatitis viruses
xco04144  Endocytosis
xco04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    114150828
   03272 Virion - Hepatitis viruses
    114150828
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    114150828
  09143 Cell growth and death
   04217 Necroptosis
    114150828
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xco04131]
    114150828
   03400 DNA repair and recombination proteins [BR:xco03400]
    114150828
Membrane trafficking [BR:xco04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    114150828
DNA repair and recombination proteins [BR:xco03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    114150828
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_5 AAA_22 AAA_14 AAA_25 RuvB_N IstB_IS21 DUF815 AAA_18 AAA_2 AAA_17 NPHP3_N RNA_helicase nSTAND3 AAA_33 PhoH TPR_1 nSTAND_NTPase5 AAA_24 Mg_chelatase ResIII AAA_28 AAA_7 TPR_2 Parvo_NS1 NACHT bpMoxR Sigma54_activat MCM Spore_III_AF
Other DBs
NCBI-GeneID: 114150828
NCBI-ProteinID: XP_027883346
LinkDB
Position
9:complement(19998282..20003368)
AA seq 435 aa
MAGGNLQKAIDLASKAAQEDKAKNYEEALRCYEHAIQYFLHVIKYEAQGDRAKQSIRAKC
ADYLDRAEQLKVYLKQKEKSPPAKPVKESGDKGSESDEGEDQEKKKFKNQLSGAIVMEKP
NVKWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT
EANNSTFFSVSSSDLVSKWLGESEKLVKNLFALAREHKPSIIFIDEIDSLCGSRSENESE
AARRIKTEFLVQMQGVGNDNDGILVLGATNIPWTLDSAIRRRFEKRIYIPLPEEHARSFM
FKLHLGSTPNGLTDDNFVTLGKKTDGYSGADISIIVRDALMQPVRRVQSATHFKKVRGSP
FSNPDVVVDDLLTPCSPGDPDAVEMTWMEVPGEKLLEPVVSMADMLRSLSNTKPTVNEQD
LDKLKKFTEDFGQEG
NT seq 1308 nt   +upstreamnt  +downstreamnt
atggcgggcggaaatttacagaaagctatcgacctggccagcaaggcggcacaggaggac
aaagccaagaactacgaggaggccctcagatgttatgagcatgccatacagtacttccta
catgttatcaaatacgaggcgcagggcgaccgagcgaagcagagtatccgggcgaagtgt
gccgactacctggaccgagccgagcagctgaaggtttacctgaagcagaaggagaagagt
cctccggccaaacccgtcaaagagtccggggacaaagggagtgaaagcgatgaaggggaa
gatcaggagaaaaagaaattcaaaaatcagctctcaggtgccattgtaatggaaaaacca
aatgtgaagtggaacgatgttgcgggactggaaggagccaaggaagccttgaaagaagct
gtcatcctcccaatcaaattccctcatctgttcacaggcaagcggactccatggcgggga
atcctcctgtttggtcctccgggaacagggaagtcctacctggccaaggcggtagcgaca
gaagccaacaactccaccttcttctccgtctcctcctctgacctggtgtccaagtggctg
ggggaaagcgaaaaactggtgaagaacctgttcgctctagcgcgggaacacaaaccgtcg
atcattttcatcgacgagatcgactccctctgcggctcgaggagcgaaaacgagagcgag
gccgctcgcagaatcaagacggagttcctcgttcagatgcaaggcgttggaaatgacaac
gatggaatcctggtgctcggagccacaaatattccttggacgctagactcggccatcagg
agaaggtttgagaagcggatctacattcctctgccagaggagcacgcccgctccttcatg
ttcaagctgcacctgggctccacccccaacgggctgacggacgacaacttcgtcactctg
ggcaagaagacagacggctactccggggcagacatcagcataattgtcagggacgccctc
atgcagcccgtcaggagggttcagtcagcgactcacttcaaaaaggttcgcggatctccg
tttagcaaccccgacgttgtggttgacgacctgctgacgccgtgctcacctggagatccc
gacgccgtagagatgacgtggatggaggttcctggggaaaagctgttggagcctgtggtg
tccatggccgacatgctccggtctctgagcaacaccaagcccacagtcaacgagcaagac
ctggacaagctgaagaagtttacggaagattttggtcaagaaggctaa

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