Xiphophorus couchianus (Monterrey platyfish): 114151056
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Entry
114151056 CDS
T05908
Symbol
vps4a
Name
(RefSeq) vacuolar protein sorting-associated protein 4A
KO
K12196
vacuolar protein-sorting-associated protein 4
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03250
Viral life cycle - HIV-1
xco03272
Virion - Hepatitis viruses
xco04144
Endocytosis
xco04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
114151056 (vps4a)
03272 Virion - Hepatitis viruses
114151056 (vps4a)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
114151056 (vps4a)
09143 Cell growth and death
04217 Necroptosis
114151056 (vps4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114151056 (vps4a)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114151056 (vps4a)
Membrane trafficking [BR:
xco04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-III complex
114151056 (vps4a)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
Check point factors
Other check point factors
114151056 (vps4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Vps4_C
MIT
AAA_lid_3
TIP49
AAA_16
AAA_22
AAA_5
AAA_14
IstB_IS21
RuvB_N
AAA_25
DUF815
AAA_17
AAA_2
AAA_18
RNA_helicase
AAA_33
nSTAND3
NPHP3_N
PhoH
AAA_24
AAA_28
ResIII
Mg_chelatase
AAA_7
Parvo_NS1
NACHT
YhdB
bpMoxR
Viral_helicase1
AAA_30
TPR_2
Motif
Other DBs
NCBI-GeneID:
114151056
NCBI-ProteinID:
XP_027883757
UniProt:
A0A3B5MTW2
LinkDB
All DBs
Position
2:24027564..24037760
Genome browser
AA seq
436 aa
AA seq
DB search
MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC
MQYLDRAEKLKDYLKNKDKQGKKPVKEAQSNDKSDSDSEGENPEKKKLQEQLMGAIVMEK
PNVSWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVA
TEANNSTFFSVSSSDLMSKWLGESEKLVKNLFDLARQHKPSIIFIDEVDSLCGSRNENES
EAARRIKTEFLVQMQGVGNNNDGILVLGATNIPWVLDAAIRRRFEKRIYIPLPEEPARAQ
MFRLHLGNTPHSLSDADLRELAHKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGP
SRSNNQVMVDDLLTPCSPGDPAAIEMTWMDVPSDKLLEPIVCMSDMLRSLSTTRPTVNTE
DLMKVKKFTEDFGMEG
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgtcgacactacagaaagcgattgatctcgtcaccaaagccacagaggaggac
aaagcgaagaattatgaggaggctttgcgattgtaccagcatgctgtggaatacttcctg
catgccatcaaatatgaggcccacagcgacaaagccaaggagagcatacgagccaagtgt
atgcagtacctggacagagcggagaaactcaaagactatctgaagaacaaagacaagcag
ggcaagaagcctgtcaaggaggcacagagtaatgacaagagcgacagcgacagtgaggga
gaaaacccagagaagaagaaactgcaggagcaacttatgggtgccattgtgatggagaag
cccaacgtaagttggaatgacgttgccggcctggagggagcaaaagaagcattgaaggaa
gctgttatcctgcccatcaagttccctcacctcttcacaggcaagcggactccgtggaga
ggcatccttctgttcggtcctccagggacggggaagtcctacctggccaaggccgtggcc
accgaagccaacaactccaccttcttctccgtgtcctcctctgacctcatgtccaagtgg
ctgggagagagcgagaagctggtgaagaacctgttcgatctggcgcgtcagcacaaacct
tcgatcatcttcatcgacgaagtggactcgctgtgcggctccaggaacgagaacgagagc
gaggcggcgcgccgcatcaagacagagtttctggtccagatgcaaggtgttggcaacaat
aacgatggtattttggtgcttggagccaccaacatcccctgggtgctggacgctgccatt
cgcagaagattcgagaagaggatctacatccctctcccggaggagccggcccgggcccag
atgttccgacttcaccttggcaacacgccgcacagcctgagcgacgccgacctccgcgag
ctcgcgcacaaaacggacggctactcgggcgccgacatcagcatcatcgttcgggacgcg
ctcatgcagccggtcaggaaggtccagtcggctactcactttaaaaaggttcgtggtccg
tcccgaagcaacaaccaggtgatggtggatgacctcttgaccccgtgttcccctggagat
cctgcagccatagaaatgacctggatggatgtgcctagtgataagctactggagcccata
gtttgcatgtcggacatgttgcgctctctgtccaccacgcgtcccacagtcaacactgaa
gacctgatgaaggtgaagaagttcacagaggactttgggatggagggttga
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