Xiphophorus couchianus (Monterrey platyfish): 114151381
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Entry
114151381 CDS
T05908
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco02010
ABC transporters
xco04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
114151381
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
114151381
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
xco02000
]
114151381
Transporters [BR:
xco02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
114151381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
Motif
Other DBs
NCBI-GeneID:
114151381
NCBI-ProteinID:
XP_027884349
LinkDB
All DBs
Position
9:4858887..4902020
Genome browser
AA seq
2361 aa
AA seq
DB search
MGFFRQLYLLLWKNVTYRRRNKIQLLIELLWPLFLFVILISVRHSHPPYKQGQCHFPNKA
LPSVGTVPWIQSIVCNINNPCFHRPTPGETPGQVGNFDNSILSRLFVDAQTVLSYSGNRS
FSNFQDLMESVRLLGERFGSLPSLPVKEYLRPNETFSSFLLTNGNLSSSAVDQLMDARLN
FQALLTGVQMPLKVLVCNATLLGELLSVDGGAANMAALQNELCELPAGVLRDAERLFLSQ
LDVTKFLTRDRLIGSANELRIVSQAISSVSQELAVLIDDLSSLSSFAEMNAALSLLSPEN
RTALPRESFGAFSRIMCGHPKSGGERIPSLNWYEDNNIKSLLGRNGTEDVVLDTDNNTTP
FCKSLIQTLESNPLSRIVWRGIKPLFIGKLLYTPDTPVVRQVMKEVNKTFEDLQILQDLN
DAWMEVGPEIKNYMETSVEIQLLKELLRRPEIAVLVNMRLENTTWTASRIVRFLSTPSPD
TPRKPGAPPTWLDVYNNIGNTVGTLSQVSKCFSLDKLEGLDSEGQLIGRALELLEDRQFW
AGVVFLLPNASSSQLPPHVTYKIRMDIDDVTKTNKIKDRFWDPGPAADPFDDMRYIWGGF
VYIQDLVERAVNYVLTGVKQTTGIYIQQMPYPCYVDDVFLRVLNRSLPLFMTLAWIYSVA
MIIKGVVYEKEARLKETMRIMGLSTGTLWLSWFISSVVPFLISAVLLIGLLKWGDILPYS
DPTVVFFFLMAFATATIMQCFLISTFFSKANLAAACGGLIYFSLYLPYVLCVAWRDHLTS
THRVLASFLSPVAFGFGCEYFSQYEEQGVGIQWFNLRASPVEGDTYSFTTSISMLYVDAF
IYAIAAWYIEAVFPGQYGIPRPWYFIFQLNYWGGIPLEAGMPIPPAPTDQDEDHIEAEPN
NMNLGVNIRNLVKIYKKGGKIAVNHLNLKFFEGQITSFLGHNGAGKTTTISVLTGLFPPT
SGTVYVKGMDIRYDLDIIRKTLGVCPQHNVLFDILTVEEHVWFYGCLKGLPEEKVMAEMS
ALLEDVGLLHKRHDQTKNLSGGMQRKLSVAIAFVGGSKVVVLDEPTAGVDPYSRRGIWDL
LLKYREDRTIILSTHYMDEAELLGDRIAIISKGKLCCCGSPLFLKSKLGSGYYLTVVKRE
ELSTSTPSYSSICTSASTSTNKLPPLVKDSESSLSEDTGLGSEDTSSYMAALLALVQQHI
PGARLVEESRREAVINLPQAAAKDGSLGIFLSKLDQRLPELGISSYGLSDSTLEEIFLRV
AEETEVDSDPASEQPAEESSGPQPSEQKAEEPEPGRKRLRKKEPKETDPLSEDGRGGTPL
TGWWLTWQQLRALFVKRWLYARRSRRGLFAQIVLPAVFVLIALLFSLIVPPFGKYPALEL
QPWMYGDQYTFFSNDDPGNPAMENLLEALLDQPGFGTKCMQREEQDDNKTNLQCEPERGG
KFMRPQMSFSTWQMLSQGNWTRDRPSPECQCSTEDTRRMLPDCPDGAGGVPPPQMKRATG
DILQNLTRYNITDYLVKTYPQILKKSLKTKKWVNEFRYGGFSLGGTSTQNISQVQHLQDS
IMAIRTRYQVEQNSSLDQLLKKLPGFLGEMHTVNNVKVWYNNKGWHAMVSFVNVMNNGLL
RASLPPGPERRRHGITVYNHPLNLTKEQLTEIAMMTTSVDVLVSICVIFAMSFVPASFIL
FLIEERVSKAKHLQFVSGVKPILYWLANFAWDMLNYSVPAMMVVLIFISFQQQSYVSDTN
LPALILLLLFYGWSITPLMYPASFVFSVPSTAYVVLTSINLFIGINGSIATFVLELFVDK
HLNEVNKILKKVFLIFPHFCLGRGLIDMAKNQALADAFQRLGSKPTLDPFRWDFVGKNLF
AMAAEGVIFFIFTILLQYKFFIHFRPWWNDPQLPPLGPEDEDVARERERVKSGKAHSDIL
TMIDLSKVYKAGKKPAVDRLCLGIPRSECFGLLGVNGAGKTSTFRMLTGDTPITHGEAFL
NQHSVQMEMERVHQLMGYCPQFDAISDLLTGREHLELYARLRGVPEDSVSKVAQWGVKKL
GLTQYAEQEAGGYSGGNKRKLSTAISLIGAPPVIFLDEPTTGMDPKAKRFLWNCILSVTK
EGRAVVLTSHSMEECEALCTRMAIMVNGRFQCLGSVQHLKNRFGDGYTIILRLADTKPDA
ESCPIDAYMRTSFPVIELKERHQSILQYQLPSHACCLARVFDVLANNYEELGVVDFSVSQ
TTLDQVFVNFAKEQTDDDCLTDVMIGNGAAQLNLPARINPPAVKPQQPPTPPQLRKSPQL
PAKSPDSNPKETKPKKAKARKVSSNGEMSGGMPMSRSPQGEEVGPEAGSSKPHRSKHREE
SSSKDPAALFIVGSNSQESSL
NT seq
7086 nt
NT seq
+upstream
nt +downstream
nt
atggggtttttcaggcagctctacctcctcctctggaaaaatgtcacataccgcaggagg
aataagatccagctgttgatcgagctcctctggcctctcttcctctttgtcatcctcatc
tctgttcgtcattcacaccctccttacaaacaaggccaatgccacttcccaaacaaagca
ttgccgtcggtaggcaccgttccctggattcaaagcatcgtctgcaacatcaacaacccc
tgcttccaccgcccgacgccgggggaaacgccgggccaagtgggaaacttcgacaactcc
atactgtctcgtctttttgtggatgctcagacggttttgtcctacagtggaaatcggagc
ttctctaattttcaggacctgatggaaagtgtccggctcctgggagaaagatttggatcg
ctgccaagtctccctgttaaagaatacctgaggcccaatgagacgttctccagttttctt
ctgaccaacggaaacctgtcgtcttcagctgtggaccagctgatggacgctcgccttaat
tttcaggctttgctgactggagtccagatgccactgaaggtcttggtgtgcaatgcaacc
ctgctgggagagctgctgtctgtggacggaggagcagccaacatggcggctcttcagaac
gagctttgtgagcttcctgctggtgtcctgcgtgacgctgagcgccttttcctctctcag
cttgatgtgaccaagttccttacaagagaccgtctaattggcagcgccaatgagctcagg
attgtcagccaggccatcagctcggtttcccaggagctcgctgtcctcatagatgatttg
tcctccctttccagttttgcagaaatgaacgcagctcttagtcttctgtctcctgaaaac
cgcacagctctgcccagagaaagctttggagctttttcaaggatcatgtgcggccatccc
aaaagtggcggtgaacgcatcccgtcgctcaactggtatgaagacaacaatatcaagtcg
ttgttgggcagaaacggcacggaggacgtggtcctggacaccgacaacaacacaactcct
ttttgcaaaagtttgattcaaacactggaatcaaatcctctttctcgcatcgtatggcga
ggaattaaacctctgttcatcggaaaattgctgtacacaccggacactcctgtagttcga
caagtcatgaaagaggtgaacaaaacatttgaagacctccagattcttcaggatctgaat
gatgcctggatggaggtgggaccagaaatcaagaactacatggagaccagtgtggagatt
cagctgctgaaggaattgctgaggcgtccagaaattgcggtcttggtgaacatgcgtttg
gaaaacacaacatggacggcgtcacggatcgttcgtttcctgtccacgccgtcaccggac
acgccgaggaaacctggagcaccgccgacctggctggacgtctacaacaacattggaaac
accgtcggcacactttcacaagtctccaagtgtttcagtttggacaagctggaggggctg
gactcggagggtcagctgattggcagagctctggagctgctggaggacaggcagttttgg
gcaggtgtggtttttctgctgcccaacgcgtcctcatcgcagctcccgccccacgtcacc
tacaagattcgaatggatatcgatgatgtgaccaagaccaataagattaaagacaggttt
tgggatccgggtccagctgccgacccgttcgacgacatgcgctacatttggggaggtttt
gtctacatacaagacctggtggagagagctgtgaattatgtcctaactggagttaaacag
accactggcatctacatccaacagatgccatatccctgttatgtggacgatgtcttcctt
cgagtgctgaaccgctccctacctctcttcatgactctggcttggatctactcagtggcc
atgatcattaaaggtgtggtgtatgagaaggaggcccggctgaaggaaaccatgaggatt
atgggtctcagcacaggaacgctgtggctcagctggttcatcagcagcgtcgtcccgttc
ttgatttctgctgtgctgctcattggtctccttaagtggggggatattttgccttacagc
gaccccactgtcgtcttttttttcctcatggcgtttgccaccgccaccatcatgcagtgt
ttcctcatcagcacctttttctccaaagccaacctggctgctgcctgtggagggctcatc
tacttcagcctctacctgccctatgtgctgtgtgtggcctggagagatcacctcacgtcc
acacacagggtcttagctagcttcctgtctcctgtggcctttggttttggctgtgagtat
ttctctcagtatgaggagcaaggcgtggggatccagtggttcaacctgcgggccagccct
gtggaaggagacacgtacagcttcaccacctccatatctatgctttacgtggacgccttc
atctacgctattgcagcctggtacattgaagcagtgtttcctggtcagtatggcatcccc
aggccttggtacttcatctttcagctcaactactggggtgggattcctttagaagcaggc
atgccgatccctccagctcccaccgaccaggatgaagatcacattgaagcagaacccaac
aatatgaatcttggcgtgaacatcagaaatttggtaaaaatctacaagaaaggagggaag
attgctgtcaaccatctaaatctgaagtttttcgagggacagatcacctccttcctcggc
cacaacggagccggcaaaaccaccaccatatccgtcctaactgggctgttccctcccacc
tctgggaccgtgtacgtgaaaggcatggacatccgctacgacctggacatcatccgtaag
acgctgggagtttgtccacagcacaatgtcctctttgacatactcacagtggaggagcat
gtgtggttttatggctgtctgaagggtttgcctgaagaaaaggtgatggctgaaatgagc
gctttgttggaggacgtcggcctcctgcacaagcgtcatgatcagaccaaaaacctctct
ggtggaatgcagaggaagctttctgtcgcgatcgcttttgttggcggctccaaagtggtc
gtcctggatgagcccacagctggcgtcgacccgtactcccgcagagggatctgggatctg
ctgctcaaatatcgtgaagatcgaaccatcattctgtccactcactacatggatgaggcg
gagctgcttggtgaccggatcgccatcatctccaaggggaaactctgctgctgcggatcg
ccgctctttctcaaatccaagctgggatctggttactacctgaccgtggtgaagagggag
gagctaagcaccagcactcccagttattccagtatctgcaccagtgccagcaccagcacc
aacaagctacctcctttagtaaaggacagtgagtcgtcactcagtgaagacaccggactg
ggaagtgaggacaccagttcctacatggcagctttgctggcactggtccagcagcatatt
cctggcgcaaggttagtggaggagtctagaagagaagccgtgatcaacctgccgcaagca
gccgccaaggacggcagtctgggtatcttcctctccaaactggaccagaggcttccagag
ctgggcatcagcagctacggcctgtcagatagtacactggaggagatctttcttcgagtg
gcagaggaaactgaagtggattctgatccagcatcggagcagccagcagaagagtccagt
ggcccgcagccatcagagcaaaaagctgaggaaccagaaccaggaaggaaaagacttcgt
aagaaagaaccaaaggagacggacccactaagtgaagatgggcgaggcgggacgcccctg
actggctggtggctgacatggcagcagctccgagcgctcttcgtcaaacgctggctgtat
gctcgacggagccgccgggggctcttcgctcagattgttctgccggctgtgtttgtgctg
atcgctctgctcttcagcctcatcgttcctccgttcggaaagtaccctgccctggagctg
cagccctggatgtacggggatcagtacaccttcttcagcaacgacgatcctggcaaccca
gccatggagaacctgctggaggctctgctggaccagccaggttttggcaccaagtgcatg
cagagagaagagcaggacgacaacaaaacgaatcttcagtgtgaacctgagagggggggt
aaattcatgcggccccagatgtcgttctccacctggcagatgctgagccaaggcaactgg
accagagacagaccttccccagaatgccagtgcagcacggaggacacccgccggatgctt
ccagattgcccggacggcgctggtggggttcctcctccacagatgaagagagccactggg
gatattctccagaatctgacgaggtataacatcacagattacctagtgaagacctacccg
caaatcctcaagaaaagcctaaaaaccaagaagtgggtaaacgagttcagatatggaggc
ttctctctcggaggcaccagcacccagaatatctctcaggtccagcatcttcaagactcc
atcatggcaatcaggacgcgataccaagtagaacagaacagttcactggatcagctgctg
aagaagctgccggggtttttgggagaaatgcacaccgtaaataacgtcaaggtgtggtac
aacaacaagggctggcacgccatggtgtcgtttgtgaatgtgatgaacaacgggctgctg
agagccagtctgccgcccggaccggagcggaggagacacggcatcaccgtttacaatcac
ccgctcaacctcaccaaggagcaacttactgaaatagcaatgatgacgacctcagtggac
gttctggtttccatctgtgtaattttcgccatgtcctttgtgccggccagttttattctc
ttcctgattgaggagcgagtgagcaaagccaaacatttgcagtttgtcagcggagtcaaa
ccaatcctctactggctggccaacttcgcctgggacatgttgaactattctgtcccggcc
atgatggttgtgctgatcttcatcagttttcagcagcagtcctacgtctctgacaccaac
ctgccggctctgatcctcctgctgctcttctacgggtggtctatcactcctctgatgtac
ccagcatcctttgttttctccgttccaagcacggcttatgttgttctgacttccatcaac
ctctttatcggcatcaacgggagcatcgccaccttcgtcctggagttgtttgtagataag
catctgaacgaggtcaacaagatcttaaagaaagtgtttttgattttcccacatttctgc
ctgggtcgaggtctcatcgacatggctaaaaaccaagccctggctgatgctttccagaga
ctgggaagcaaaccgactcttgacccttttcggtgggactttgttgggaagaatctgttt
gcgatggcagctgaaggtgtcatcttcttcatcttcaccatactcctgcagtataagttt
ttcattcacttcaggccgtggtggaacgatcctcagcttcctcctcttggtccagaggat
gaagatgtagcgagagaacgtgaacgagtgaaaagtggcaaagctcattctgatatcctc
accatgattgatctaagcaaggtttataaagctggaaaaaagccagctgtggatcgactt
tgcctcgggattccccgcagtgagtgtttcggcctgcttggtgtgaacggagcagggaag
acgtccacgtttcgcatgctgactggagatacaccgatcacacatggagaggctttcctc
aaccagcacagtgtgcagatggagatggagcgcgtccaccagctgatgggttactgtcca
cagtttgatgccatcagtgacctgctgacgggtcgggagcatctggagctctacgctcgg
ctcaggggggtgccagaggattctgttagcaaagtggcgcagtggggggtgaagaagctg
gggttgacccagtacgcagagcaggaggctggaggatacagcggaggcaacaagaggaaa
ctttccacggcaatctccctgatcggagcgcctcctgttatattcctggatgagcccaca
actgggatggacccaaaggccaaaagatttttgtggaactgcatcctgagtgtcacgaaa
gaaggcagagctgttgtcctcacttctcacagcatggaggagtgcgaggctctttgcacc
aggatggccatcatggtgaacggcagatttcagtgtctgggatccgtgcagcacctgaag
aaccgattcggagacggatacaccatcattctccgtctggcggacaccaaaccggacgcc
gagtcctgtcccatcgacgcctacatgaggacatcgtttcccgtcatcgagctgaaggag
agacaccagagcatcctgcagtaccagctgccatcgcacgcctgctgcctggcccgcgtc
tttgacgttctggccaacaactacgaggagctcggcgtcgtggacttctccgtctcgcag
accaccctggatcaggtgtttgtcaactttgcgaaggagcagactgatgacgattgcctc
actgacgtgatgatcggtaacggcgcggcgcagttaaaccttcccgccagaataaatccc
cccgccgtcaaaccccaacaacccccaacgccacctcagctgaggaaatccccacagctt
cctgcgaaatcacccgacagcaacccgaaggaaaccaagccgaaaaaggccaaagccaga
aaggtcagttcaaacggagagatgagcggcggcatgcccatgagcagatcacctcaggga
gaggaagtcggtccagaggcgggcagcagcaaacctcacaggtcgaaacacagagaggag
agctccagcaaagatccggctgcgctcttcatagtcggcagcaactcacaggaaagctcg
ctgtga
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integrated database retrieval system
