Xiphophorus couchianus (Monterrey platyfish): 114152173
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Entry
114152173 CDS
T05908
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
114152173 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xco03400
]
114152173 (msh2)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
114152173 (msh2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
ENT
Motif
Other DBs
NCBI-GeneID:
114152173
NCBI-ProteinID:
XP_027885764
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Position
10:5855721..5874629
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AA seq
937 aa
AA seq
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MAVQPKQNQNLSLDSAAEHGFLNFIFSMPEKPDTTFRIFDRNDYYTVHGKDAIFAAKEVF
KTNGVIKYLGSGSRKLESVILSKLNFEAFAKDLLLVKQYRVEVYRNQSKSSKEHDWRIEY
KASPGNLTQFEDILFGGGSGGEGCAGVVAVRFATGADGQRVVGVGYVDAAQRTMGVCEFP
DNEIFSNLESLLVQISPKECLLAQGECSAEGNKLREVVQRGGVLVSDRKRAEFSSKDIVQ
DLNRLLRSKRGETVASNTLPELDKQVAMSCLAAVVRFLELLSDDSNFNSFSLTTLGLGQY
MRLDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEER
LDLVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRHTATLQDCYRVYQAVSHIPALIT
ALESYSGSYKVLLHAVFTSPLTDLQTDFIKYQEMIETTLDVNQVEHHEFLVKASFDPALS
ELREKMDALEKSMQAVLSSAARELGLEAGKTVKLESNAVLGFYLRVTCKEEKSLRNNKKF
TTLDVQKNGVRFTNSKLSSLNEEYTRNREEYEEAQNAIVKEIINIASGYVDPLQTLSDVI
AQLDAVASFAVASVSAPVPYVRPRLLDDGRRRLELLQARHPCMETDADTAFIPNDISFVQ
GEKSFYIITGPNMGGKSTFIRQVGLIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQV
KGVSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHISSKINCFCL
FATHFHELTALAAQQPAVHNLHVTALTTHNTLTMLYRVKPGVCDQSFGIHVAELACFPLS
VLAVAREKAEELEEFQEPVGDDSKRDEEPEVKRRRTDKQVGEKLIQDFLEKVKALPVVTM
TEEEVKAELRRIKQDLVAKNNTYISEILARCAPVKTA
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaagcagaaccagaacctgtccctggacagcgcggccgaacacggc
tttctgaacttcatattctctatgccggagaaaccggacacaaccttcaggatattcgac
cggaacgactactacaccgtccacgggaaagacgccatatttgctgccaaggaggttttt
aagactaacggagtcatcaagtatctgggctcagggagccgtaagctggagagcgtgatc
ctgagcaagctgaacttcgaggcctttgcgaaggatctgttgctggtgaagcagtaccga
gtggaggtatacagaaaccaaagcaagagcagcaaggagcacgactggaggatcgagtac
aaggcctctccaggaaacctgacccagttcgaggacattctgttcggcggaggaagcgga
ggcgagggatgcgcgggagtggtcgccgtgcggtttgcgacgggagccgacggacagcga
gtggtcggggtcggctacgtggacgcagcccagaggaccatgggggtgtgtgagtttccg
gacaacgagatattctccaacctggagtctctactcgtccagatcagccccaaagagtgt
ctgctggctcagggagaatgcagcgctgaggggaacaagctccgggaggtggtgcaacgt
ggcggcgttctggtctctgacaggaagagagcagagttcagcagcaaggacatcgtccag
gatctcaacaggctactgcgatctaagagaggagagacggtggcgagcaacacgctgcct
gaactggacaagcaggtggccatgtcatgtttggctgctgtggttcgattcctcgaactt
ctctccgatgactcgaacttcaactctttcagcctcacaacgctggggctggggcagtac
atgaggctggacaacgccgccgtcagggctctcaacctcttccagggttcgcctgacgac
accagtggagctcattcattggccggtttgttgaacaagtgccgcactccgcagggtcag
cggctggtcaaccagtggatcaaacaaccacttatggacaaaaccaaaatagaggaaaga
ctggaccttgtggagagttttgtgtgcgactcggagctgaggcagacttgtcaggaggat
ctgctgcgacgctttccagatctccaccgccttgccaaaaagtttcaccgtcacacagcg
acgctgcaagactgttaccgcgtctaccaggccgtgagtcacatccccgctctgatcacg
gctctggagagctactcaggcagctacaaggtgttgctgcacgcggtgttcacctcgcct
ctcactgacctgcagacggatttcatcaagtaccaggagatgattgaaaccactctggac
gtgaatcaggtcgaacaccatgagttcctggtgaaggcgtcgttcgatcccgctttgagt
gagctcagggagaagatggacgccctggagaaaagcatgcaggctgtgctgagcagtgca
gccagagaactaggtctggaagccggtaagacggtgaagctggagtccaacgctgttctg
ggcttctacctgcgggtcacatgcaaggaggagaagagtctgaggaacaacaagaagttc
accacgctggatgttcagaagaacggcgttcgcttcacaaacagcaagctgagctctctg
aacgaggagtacaccaggaacagggaagagtacgaggaggcccagaacgccattgtcaaa
gagatcatcaacatcgcctcaggttacgtggatccccttcagacgctgagtgacgtcatc
gcgcagctcgacgcggtggcgagcttcgccgtggcgtcggtgtccgctccggttccgtac
gtccggccccgactgctggacgacggccgcaggcgtctggagctgctgcaggccagacat
ccctgcatggagacggacgcggacaccgccttcatacccaacgacatcagcttcgtccag
ggggagaagagcttctatattataacaggaccaaacatgggagggaagtccacatttatc
cgtcaggtgggtctgatcgcgctgatggctcagatcggctgcttcgtgccgtgcgagaag
gctgagctcagcgtgatcgacagcgttctggcccgagtgggagcaggagacagccaggtg
aagggagtgtccaccttcatgtctgagatgttggaaactgctgccatcctccgctctgcc
acggaaaactcgctcatcatcatcgatgagctcggcaggggaacctctacgtacgacggc
ttcgggctggcctgggccatcagtgaacacatctcctccaaaatcaactgtttctgcctc
ttcgccacgcacttccacgagctgacggccttggcggcacagcagccggccgtccacaac
ctgcacgtcaccgccctgacgacccacaacacgctcacaatgctgtaccgagtcaaacca
ggtgtgtgcgaccagagttttgggatccacgtcgctgagctggcctgcttccccctgtcg
gtgctggccgtggcgagggagaaggcagaggagctagaggagttccaggaacctgtgggg
gacgattcgaagcgggacgaagagcccgaggtcaagagacggcggacagataagcaagtg
ggagaaaagctgatccaggacttcctggagaaggtgaaggcacttcccgtcgtcaccatg
actgaggaggaggtgaaggcagagctcaggagaataaagcaggacttggtggccaaaaat
aacacgtacatcagtgagatacttgcccgctgcgctcctgtaaaaactgcctga
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