Xiphophorus couchianus (Monterrey platyfish): 114152539
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Entry
114152539 CDS
T05908
Symbol
lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
114152539 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xco03400
]
114152539 (lig3)
Enzymes [BR:
xco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114152539 (lig3)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
114152539 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
114152539
NCBI-ProteinID:
XP_027886257
LinkDB
All DBs
Position
11:complement(11222479..11239485)
Genome browser
AA seq
1001 aa
AA seq
DB search
MQRHLIFLVQKTVCVGRQPFGTLIRFKQASALCRTFPISSTSDQRKSLASHKHHLQKRHA
PWTSIRRCFSEWLDMSEQRFLVEYAKRGTAGCKKCKDKIQKGVVRIGKVVPNPFSESAGE
MKEWYHVKCIFEKLERARATTKKIEDLTELEGWEELQEEDKELINKHVSDLMAKVNASPK
KKVQAKLNTTGQLMAPPADPSVNAPRKFSGFTAAKAGSSSSSSSSSSPGLSTSPAAKAGS
GSALSTQLCDAQHKDCLFREFRKLCAMVAENNSYNSKTQIIEKFLKKGTGGDKFHGDLYL
TVKLLLPGVVKSVYNLNDKQIVKLFSRIFRSNQEDMVRDLEQGDVSETVRIFFEESKCFP
PAAKSLLTIQEVDGFLMRLAQLTKEDEQQSELESIAKKCTSNDLKCIIRLIKHDLKMSAG
AKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQDATSGSGPRKLLTVEASLMTPVQPML
AEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGNTFSYFSRSLKPVLPHKVAHFKEYI
PQAFPGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDAKVGLFVFDCIYFNGVSL
MERPLCERRKFLDDNMVEVPNRILFSEMKHVTRAGDLAEMITRVIREGLEGLVLKDVKGS
YEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPDSKKWCT
VTKCSGGYDDAMLARLQKELDVIKISKEPGKIPSWLKIVKNYYPDFIIRDPEQAPVWEIT
GAEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLHQLRELFRISKENCDFKVTAGPS
TSDDKGSSGGDSGGNSPSSSSSRSAPAKKTSNSTPTKPKAVKSKPRTPTSEASSAKKVKK
SEESVQSNGQNKASSQLLQPKNDKSLLDIFSGVKLFLPVSVQDFDRLRRYFVAYDGDLVP
DYDSASATHTLGDPEGGSRAQRVSPSWIWECIRKRRVVPPC
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgcagaggcatcttattttcttggttcagaagactgtctgtgtgggccgacaacctttt
ggtacactaatccgatttaaacaagcttcagcgttgtgcagaacatttccaatttcatct
acctctgatcagcgaaaatccttagcatcccataaacaccaccttcaaaaaagacacgct
ccctggacttcaattcgccggtgcttttctgagtggctagatatgtcggaacaacgcttc
ctggtggaatacgccaaacgtggcacggcggggtgcaagaaatgcaaggacaagatccag
aagggcgtcgtgcgcatagggaaagtcgtgccaaaccctttcagcgagtctgctggcgag
atgaaagagtggtatcacgtgaagtgcatatttgagaagctggagagggcaagagccacg
acgaagaagatcgaggacctgacggagctggagggctgggaggagctgcaggaggaggac
aaagagctcattaataaacacgtttcagacctgatggccaaagtcaatgcaagtcctaaa
aagaaggtccaggccaagttgaacaccactggtcagcttatggcgccccctgctgaccct
tctgtcaatgctccgaggaagttttctggcttcacagctgcgaaggctggcagctccagc
agctccagcagctccagcagccccggactgtcgacgtccccggcggccaaagccggctcc
ggcagcgccctgtccactcagctctgcgacgcccagcacaaagactgcctcttcagggag
tttcgcaaactctgcgcaatggtggctgaaaacaacagctacaacagcaagacacagatt
atagagaagttcctgaagaagggcacaggaggagataaatttcacggagatctttacctg
acggtgaagctgctgctgccaggcgtggttaaaagtgtttacaacctgaacgataagcag
atagtaaaactcttcagccgcatattcaggtccaaccaggaggacatggtgcgagatctg
gagcagggcgacgtgtcagaaactgtgaggattttcttcgaggagagcaaatgttttcct
cccgctgccaagagcctcctaacaatccaggaagtagatgggttcctgatgcgcctcgct
cagctcacaaaggaggacgagcagcagagcgagctggagagcatcgccaaaaaatgcacc
agcaacgacctgaaatgcatcatcaggctaattaagcacgacttgaagatgagcgctggc
gccaaacacgtgttggacgcggtagatccaaacgcgtacgacgccttcaaggcctcccgt
aaccttggcgacgtgatcgagagggttctgaggaaccagcaggatgccaccagcggttct
ggacccaggaagctcctgaccgtggaggcgtctctcatgacgcccgtccagccgatgctg
gccgaggcgtgtaaatccatcgagtacgccatgaagaaatgtcccaacgggatgtactcg
gagataaaatacgacggcgagcgcgttcaggtccacaagaacggaaacaccttcagctac
ttcagccgcagcctcaagccggtgctgccccacaaggtggcccatttcaaagagtacatc
cctcaggctttccctggcggtcacagcatgattctggacgctgaagtcctgctgattgac
acaaagaccagcaaaccgctgccgtttggcactctgggtgttcacaagaaagctgccttt
caagacgccaaagtgggtctgtttgtgttcgactgcatttacttcaacggtgtgagtttg
atggaaaggccgctctgcgaacgcaggaagttcctggacgacaacatggtggaagtccca
aacaggatcctcttctcagagatgaagcacgtcacgagggcaggagacctggcggagatg
ataactcgcgtcatcagagaaggactggaaggcctggtgctgaaagacgtaaagggaagc
tatgagccggggaagcgacactggctgaaggtgaagaaggattatttgaacgagggagcg
atggccgacacagcagacctggtggtgctcggtgccttctacggaaaaggatcaaacggg
ggcatcatgtctagctttctgatgggctgctacgacccggactcgaagaagtggtgcacg
gtgaccaagtgctccggaggatacgatgacgccatgctggcccgactccagaaggagctg
gatgtgatcaaaatcagcaaggaacccgggaaaattcccagctggttgaaaattgtcaag
aactattatcctgattttattatccgtgaccctgagcaagcgccagtctgggagatcacc
ggcgcagagttttccaaatcagaaatgcacaccgccgacggcatctccatccgcttcccc
cgcatgacgcgaatccgcgacgacaaggactggaagacggccaccaacctgcaccagctc
agggagctgtttcgcatttcgaaggagaactgcgactttaaagtgacggcgggtccttcc
acgtccgacgacaaaggctcatcgggaggagacagcgggggaaactcgccgtcgtcctca
tccagcaggagcgctccggccaaaaagacgagtaacagcacccctaccaaaccaaaggct
gtaaaatcaaaacctcgcactcccacctctgaggcctccagtgccaagaaggtgaagaag
agcgaggagagcgttcagagcaacggacaaaacaaagcgtcttcccagctgctgcagccg
aagaacgacaagtcgctgctggacatcttcagcggggtcaagctcttcctccccgtctcc
gttcaggacttcgacagactgcggcggtactttgtggcgtacgacggggacctggtgccg
gattacgactccgcctcggctacacacacgctgggcgacccggaggggggcagccgggcc
cagagggtctctcccagctggatctgggaatgcatccgaaagcggcgcgtcgttcctccc
tgctga
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