Xiphophorus couchianus (Monterrey platyfish): 114152846
Help
Entry
114152846 CDS
T05908
Symbol
ltn1
Name
(RefSeq) E3 ubiquitin-protein ligase listerin
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xco03009
]
114152846 (ltn1)
04121 Ubiquitin system [BR:
xco04121
]
114152846 (ltn1)
Enzymes [BR:
xco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114152846 (ltn1)
Ribosome biogenesis [BR:
xco03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
114152846 (ltn1)
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
114152846 (ltn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
LTN1_E3_ligase_5th
zf-RING_2
HEAT_GCN1
FANCL_C
zf-ANAPC11
zf-rbx1
RINGv
zf-RING-like
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
114152846
NCBI-ProteinID:
XP_027886733
LinkDB
All DBs
Position
11:complement(16638136..16653502)
Genome browser
AA seq
1767 aa
AA seq
DB search
MGGKNKQRTKGNVRPSSSGRAAEVLAREGGAIPGFVGFDTTVTSELSYVPAVHGAEEIDN
LVDADFRLVLRKLSKRDVVTRLKAVQDFGAMCQERDAEEVKGVLPYWPRIYCKISVDPDR
RIREATQQAFEQLVLKVRRSLAPFLKSLMGHWILSQCDTYTPAASAACQAFQAAFSPAKQ
PEALSFCKDEILTVLQDVLLKETADTLSDSQSVTEEERETKYFRMLTSSLLGVKKLLSLL
LQDDRAALQQRLALLVNSGKFWKYSKHKTPQIRGAFFEMQCALCEFTPDMVQSEAARLCP
AVLLSIDDTDPVVLPHVWEAVLHVMSTIPDCWTHVNAKKGFLPKLWALLKEGGKGMAKGL
HPNLMPLLSKLPQQITDPDLDFYTTFYTAFLQGLSSERAATSPSESAVIVTSFVECLRYS
ITQNAGDEQSQEKIRSMLISQQLLPLIEKAIRNPSLQNGPLFLLITEMLISWEKRAGLHC
EGEKNNNKDVFKRLLADFWEELGLLCVRFVDDEDVDLQALEGVATLLQVMRNPERISKKQ
TQKKKSVRLCLTKTEEEEKSVIQGEGVEKFAQTVSEPVQEKALGSLQTQHFEDAVCQLAQ
LCLAHVNEKNSEKHLVFLSLLLQSFHTPRIFSTLLEFDEIKPGDDKWTGEKNPAVQFLLR
RVVVWLAEVGRSDTEHLVEMVFSSLSCCSQEETTQILNHITTMGLEWRIILQIIQRAGKD
PKTRASCRNWLKGSILGEQLLGLTAELCKMEHNSTAPKTPTSNNSWTLIGLVLSQNNNNE
SLIGEVYMEKMLEKLHTTLSETKSLSDAGNMEPLISFICDVASSFFCSVQDCLLLLSAEE
LLLTVFQLTAQDQRHTHLSESLLDKLKKVCAAGVRSLVQHCECEVRQGGFLHSAAVWVMK
QLLTSNLDIKGLQVLVRAVQSLVETIVSVGGQASSVLSQFFALLTPSQTEWTRIRHALSP
QWVKSPLLSNRHRGVCEKPSKDMWKSRDSNRLPAHLCVCAVLGIVAQTAAVLASGQKEAP
CSSFLPNLTGTVSEVLYALQWCKELDFRPPVASAYRNLLAEWGLSAGLHSKVPMKSLLET
LYSRSVTDGGLWTLTLENYIHTNNLAATCSGALKRLYDSADSLFPVNLSKLSTLQVLCPL
MAKEDRETLIALATAGIINWQEEENVYGSLAVLLCCLNANTPVEDEVIQAVLATLMEWRN
SREDWFLFSCDLSDTTSEQLNLNVEMIRFLCWSVTHCPAVLGGNQWDFLLCSMLAWLETA
SENVSCLWNPWVQLFVCENAALIVTLNQFFAAPSSDVLEKLPTELAGEWKDFFIEGIYNL
LLPLPVRITEAFPEPDDPVFPMAVLQSVGLALTCVPVQQLNQNSLPPRFIADQKTNLPEP
LQTLLNTLCPLLLFKARPLQVTVHHMLEKVMPQLPECDGEGDSNRSDDDRDEPCLSPPAA
LMAILSTCEELCDSILAALQVGEFAVVQPLSVEYSCILAYLLAWKLLLTFFKSSPSHLRA
HYAQYLKRSCSLNKLLLHLFKLMPENPICPGQGTETKESKTFFTESLLLTVDKNVGVEWE
LPHLACSVYYSTVQDLPAMVRLWWNSQEKRVSSAVEKFTSKYVSPVLSAQEISSVHDSTQ
MFDSMTVKARSAAREVIAIYSVDDIYIELVIQLPQNYPLGSITVESGRRVGVAVQQWRNW
MLQLSTYLTHQNGSIMEGLALWKNNVDKRFEGIEDCMICFSVIHGSNYSLPKKACRTCKK
KFHSACLYKWFTSSNKSTCPLCRETFF
NT seq
5304 nt
NT seq
+upstream
nt +downstream
nt
atggggggaaagaacaaacaacgaacaaaaggaaatgttcggccgtccagcagcggccga
gctgctgaggttctggcccgggaagggggtgccatcccgggcttcgtgggcttcgacacg
acggtcacctctgagctgagttatgtcccagctgtccacggagcggaggaaatagacaac
ctggtggatgctgatttccgcctggtgctgaggaaactctcaaagagggatgttgtcacc
agactgaaagcagtgcaggactttggggccatgtgtcaggaacgggatgcagaagaggtg
aagggagttctgccatactggccaagaatttactgcaagatatcagtggaccctgaccgc
cgtatcagggaggccactcagcaagcttttgaacagctggtgctaaaagtgcgtcgcagc
ctggctccctttctgaagagtttgatgggccactggattctgtcgcagtgtgacacgtac
acacccgcagcctctgccgcctgccaggcctttcaggctgcgttctcgcctgctaaacaa
cctgaagctctcagcttctgcaaggacgagatccttactgtgcttcaagatgttctgtta
aaggaaaccgcagacactctaagtgattcacaaagtgtgacagaagaggaaagagaaacc
aaatattttcgcatgctgaccagttcgttgttgggggtgaagaagctactttccctgctg
cttcaggatgacagggcagcactgcagcaaagattggctctactggttaactctgggaag
ttctggaaatacagcaagcacaagacgccacagatcagaggagccttttttgagatgcag
tgtgctctgtgtgaattcacaccagatatggttcagagtgaagcagcacgactgtgccct
gctgttctcctcagtatcgatgacacagaccctgttgtgcttcctcacgtgtgggaggca
gttcttcatgttatgtccactattcctgattgttggacacatgtaaatgccaagaaaggc
tttcttcctaaactctgggctttgttgaaagaaggaggtaaaggcatggctaaagggctc
catccgaatctcatgcctctcctcagcaaactgccgcagcaaatcacagatcctgacttg
gacttctacaccacgttttacaccgcattcctgcaaggcctgtccagtgagcgtgcggcg
acgagcccgtcggagagcgcagtcatagtgacgtcgtttgtcgagtgcttgaggtacagc
ataacgcagaacgccggggacgagcagtcccaggagaaaataaggagcatgctcatttcc
cagcagctcctaccgttgatagaaaaggctattagaaatccttcccttcagaatgggcct
ctttttctgctgatcaccgaaatgctcatttcctgggagaagagggcgggtttacactgt
gaaggcgagaaaaataacaacaaggatgtcttcaagagacttttagctgacttctgggag
gaactcggtctcctgtgtgtgcgttttgtcgacgacgaggacgttgatcttcaggctttg
gaaggcgtagccactttgctgcaggtcatgcgtaatcctgagagaataagcaaaaaacaa
acccagaagaagaaatctgtcaggttgtgtctcacaaagacagaagaggaagagaaatca
gtaattcagggagagggagtcgaaaagtttgcgcagactgtgtcggagcctgtgcaggag
aaggcgcttgggtccctacagactcagcattttgaagacgccgtgtgccagctggctcag
ctgtgcctcgcgcatgtgaatgagaaaaactcagagaaacatcttgtttttctgtccctt
ctcctacagtcttttcacacgcccaggattttcagtaccttacttgaatttgatgaaatt
aaacctggagatgacaaatggacgggggagaaaaatccagcagttcagtttctgctgagg
cgtgtggtcgtgtggctggcggaggtgggccgcagcgataccgagcacctggtggagatg
gtcttcagctcactgtcctgctgcagccaggaggagaccacacaaattcttaatcacatc
accacgatgggtttggagtggagaattatcctgcaaattattcagagagcaggtaaagat
cccaagactcgggcaagctgcaggaactggctgaaaggttcgattctgggcgagcagctc
ctgggattgactgcagagctctgcaagatggaacacaactcgactgctcccaaaaccccc
accagcaacaacagctggacgctcattggcctcgttctctctcagaacaacaacaatgag
tctttaataggagaggtgtacatggagaaaatgttggagaagctccacactacgttgtcc
gagaccaagagtctgtcggacgcgggcaacatggagccactcatctccttcatctgcgac
gtggcttcctctttcttctgctccgtccaggattgcctgctgctcctctctgctgaggag
ctcctgctgaccgtcttccagctgactgcgcaagatcaaagacacactcacctgtctgaa
tcactgttggataagctgaagaaagtgtgtgcagctggagtcaggtcactggtgcaacac
tgtgaatgcgaggtccgccaaggcggcttcctgcacagtgcagccgtctgggtcatgaag
cagcttctgaccagcaatctcgatattaaaggcttgcaggttttagtcagagctgtccaa
agcttagtggaaacaatcgtctccgttggcggccaagcatcctccgtcctcagccaattc
tttgctcttctgacaccgagccagacggagtggaccagaatcagacacgccctgtctcct
cagtgggtcaaatctcctttgctgtccaaccgtcacagaggagtttgtgaaaaaccctct
aaggacatgtggaagtccagagactcaaacaggctgccagctcacctctgtgtctgtgcc
gtcttgggaattgtggcccagactgctgcagttctagcttctggccaaaaggaggcgcca
tgttcttcattcctcccaaaccttacaggcacagtttcagaagtgttgtatgcgctgcag
tggtgtaaggagctcgatttccggcccccagtagcatctgcttatcgcaacctgttggct
gaatggggactatcagctggactccatagcaaagttccaatgaaatctctactagagacc
ctctactcaaggtctgtgacagatggaggtctgtggactctgactctagaaaactacatc
cacaccaacaacttggcagccacttgcagtggagctctaaaaagactttacgatagtgca
gatagtcttttcccagtgaatctgagcaaactcagcacactgcaggtgctctgcccactt
atggctaaagaagacagagaaactctgattgctttggctactgctggaataatcaactgg
caagaggaagaaaatgtttatggcagtctggcagtgctgctgtgctgcctgaacgccaac
acgccggtagaagacgaggtcattcaggctgttcttgccactctgatggaatggaggaac
agcagagaggattggtttctctttagctgtgacttgtccgatacgacatctgaacagctg
aacctcaatgtggagatgattcgattcttgtgttggtcggtgactcactgtccagctgtt
cttgggggaaaccagtgggactttctgctctgctctatgttggcctggttggagactgcc
agtgagaatgtgagctgtctgtggaacccctgggtgcagctgtttgtgtgcgagaacgct
gcgttgatcgtgacgctgaaccagttcttcgcggcgccatcctctgacgtcctggagaag
ctgccaacagagctggccggcgaatggaaagatttcttcatagagggaatctacaacctc
ctgttgcccctgccagtgagaatcactgaggcttttcctgaaccggatgatcctgtgttc
cccatggctgttctccagtcggttggtttggctctgacttgtgttccagtccagcaacta
aaccaaaattccctgccgccacgatttatagcggaccaaaagaccaacctgccagagcct
ctgcagaccctgctgaacactctgtgtcccctgctgctgttcaaggccaggcctctgcag
gtgactgttcaccatatgctggagaaagtgatgccacagctgcctgaatgtgatggcgaa
ggcgatagcaataggtctgatgatgacagagatgagccatgtctatctcctccagctgcg
ctcatggccattctgtcgacctgtgaagagttgtgtgacagcatcctggcagcgcttcag
gtgggagagtttgcagtggtccagcctctcagcgtggaatactcctgcatactggcttac
cttcttgcgtggaaactgctccttacttttttcaaatcctccccctcccatctgcgtgcc
cattatgctcagtatttgaagagaagctgctctcttaacaagctgctcctccatctcttc
aaactgatgcctgagaacccgatttgcccgggccaggggacagagacaaaggagagtaaa
actttcttcacagagagtctgcttctcacagttgacaagaacgttggcgttgagtgggag
ctcccccacctggcttgcagtgtgtactacagcacagtgcaggacctgcccgccatggtg
cgtctgtggtggaacagccaggagaagagagtgagctctgcagtggagaagttcaccagt
aaatacgtcagtcctgttctgtcggcccaggagatctcctcggtccacgacagcactcag
atgtttgacagcatgactgttaaagcccgctcagcagcgcgagaggtgattgccatatac
tccgtggatgatatctacatcgagttggtgattcagttgccgcagaactaccctctgggc
tctatcactgtggagagtgggagacgtgtgggcgtcgccgtgcagcagtggaggaactgg
atgctgcagctcagcacctacctcacacatcagaacggcagcataatggagggcctggct
ctgtggaagaacaacgtcgataagcgcttcgagggcatcgaggactgcatgatctgtttc
tctgttattcacggctccaactactccctgccaaagaaagcttgtcgtacctgcaagaag
aagttccattctgcttgtctgtacaaatggttcacttccagcaacaagtccacctgcccg
ctctgcagagaaaccttcttttag
DBGET
integrated database retrieval system
