Xiphophorus couchianus (Monterrey platyfish): 114152867
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Entry
114152867 CDS
T05908
Name
(RefSeq) transcriptional regulator ATRX-like
KO
K10779
transcriptional regulator ATRX
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
114152867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xco03000
]
114152867
03036 Chromosome and associated proteins [BR:
xco03036
]
114152867
Transcription factors [BR:
xco03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
114152867
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
114152867
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
114152867
NCBI-ProteinID:
XP_027886771
LinkDB
All DBs
Position
11:complement(20495554..20518477)
Genome browser
AA seq
1901 aa
AA seq
DB search
MSALRGTSSNKLNLLVDKLHEYLAHSSIEDRYGIPTSEDYHGQINKQFSVENSRVDNVTE
AGLDTRYSKRKPSVVVKHSGLDESGESNASEDFEMPVSSNGHLDVTRLPKGTVLVRPEPV
DNGRDEFRGPEFRSRKPGVLRKEFSRKRAGGQHVGIVCCTACGRQVNHFRRDFLYQHPVL
KVLICKSCYNYYSSDDISKDRDGMDEQCRWCAEGGNLICCDYCSNAFCKKCILRNLGRKE
LSSILESKWYCYVCSPEPLFDLVMACDTVLENVEPLWPHQRRRNRAEPEKSELYRILSQR
SAQNIPLDKWDHSGMDGNVIFNYNNLQVSKDVTKKAKHLVDSTNALNQTFISFIETVTTN
KPTPSVRAVYLNSFLAVVKGLRKSLTALEDSLKEEFRDLDVGSNWENILRSDCKRLMRNS
DIELDMSDKRCLSNLQKLASEHFEDNDADSKGYIDLTNDCSEKELDSNSENIGLTSSSSE
VDMSKKLIVQLTPVPMEQKESADVPKLDENFPEEENKSKEKDASEEQVVGSPKDERQMSI
DTASTPILLKEKQGNRRSPRLKTTPLRRQSDITIKPSLSGVDSESDSEPEETPDTVPATG
NDEQNLSRSRDDSDSDEVPAALLERAAMTHSSDEPQSDEDRNQAPPDKVAKKCLFWLTKN
SPMSPEKLRRKRKMLDRSSESESGSRVVKARQESGTDFSSDDQDSQKEIQHLNTVRSIGK
PHLMRREEEGVVRKQKRMQASESKGKRHQDVTDSSSSLSDDEQEDDSGSDVSDQKMKPIT
ENVTSLGVAAFQQSSGDEEQSGPSWAAEDDEDPENRIAKQLLLAQIKANLSSDGDISSEG
ETQEDQSESDGDGEPSQGNEDDNAANTRREDLVSETSDSMLDEPKSRHHLLRHKLTLDEG
ASSDKTEPEGEVGMQKSKRRTRRKRLFSGSETCSEGSEETEMSEELSESEDEAAEDEIER
SSKREKEATCIELNKQVPCILLSDSSIEKSDEEDVNEENSESKGTPKGRKKIRKIIDDEN
LRAETQEALREEEERRRRLADRSQQMEDWREITVIPDELSQVECPVTTKLVLDQDEETKM
PLVQVHRNLVTNLKPHQVDGVQFIWDSCCESVKKANSSPGSGCILAHCMGLGKTLQVVAF
LHTVLLSSNLKFRTALVVCPLNTLLNWVSEFKRWQHSLGEDRVKVSEMATVKHLPERLRA
VQTWQRDGGVMIIGYEMYRNLSQNSNATNEECNKELKSALVDPGPDFVICDEGHILRNES
SRISKAMNGIKTQRRLVLTGTPLQNNLVEYHCMVNFIKKNLLGSLSEFRNRFINPIQNGQ
CADSTPRDVRIMKKRAHVLHAVLAGCVQRRDYSELTQFLPPKLEYVLLVRISPLQYKLYR
YYLDHVASEGSATGQKPLKTGANLFKDFQVLSRIWTHPWCLHLSDLGKESRRKTFYKRNQ
LQMINVETIVAESGLKQNEGNEQNVNGQSTMSTDRPQTVRVVEGEKSSSSSRCQSPFEAW
YRHRLSESDARIMEHSGKMVLLFEILRMAENLDDKVLVFSQSLISLNLIEDFLAASHNAR
DPLLSIKEGSWIKNVDYYRLDGSVSATSRKKWADEFNNADNYRGRLFLISTRAGSLGINL
AAANRVVIFDASWNPSYDIQSIYRVYRFGQLKQVFVYRLLAQGTMEEKIYDRQVTKQSLS
YRVVDHQQVERHFTFHELTELYTFEPDLLDDPNSKKSKRPTPILPKDSILAELLKICKDR
IVSYHEHESLLDHKHEEELSEAERKAAWAEYEAESNTVKLPASSSQDRLQKKTNEQLLEI
LNRSRANVSLAFLTLQNMRIPSIEDYKVRLRQQYPFLPEVELQIKAELWRQSDVNRRDIT
QSFYQDSLAQHQSLTFQIQALLNSRRTLVNPITLNTSTQPG
NT seq
5706 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctttaagaggaacctctagcaacaagctgaatttattggtcgacaagcttcat
gaatatttggctcattccagcattgaggacagatatggcattccaacatcagaggattat
catggtcagataaacaaacagttttctgtggagaactcaagagtggataatgttacagag
gctggtttggacactagatattcgaaaagaaaaccttcagtagttgtaaagcactctgga
ctggatgaatctggcgaatcaaatgcaagtgaagactttgagatgcccgtcagctcaaat
ggtcaccttgacgtcactagattgcctaaaggtacagttctggtgagacctgagccagtg
gacaacggaagagatgaattcagaggtccagaatttcgtagtcgcaagccaggggtactt
cggaaagagttttcaaggaaacgtgcaggagggcaacatgtgggaattgtgtgttgtact
gcgtgtggtcgacaagttaaccacttccggagagatttcctttatcaacatccggttctg
aaagtgcttatttgcaagtcatgctacaattattactccagtgacgatataagtaaggat
agagatggcatggatgagcagtgcaggtggtgtgctgaaggaggcaacttgatctgctgt
gactactgtagtaatgctttctgcaagaaatgcattcttagaaatttgggcaggaaggag
ctctccagcatcttggagagcaaatggtattgctacgtgtgcagcccagagccgcttttt
gacctggtgatggcctgcgacaccgtcctggaaaatgtggagcccctgtggcctcatcaa
cggaggaggaaccgagcggagccggagaagtctgaactgtaccgcatactgtcacaacgc
tcggctcaaaacattcctttggataaatgggaccacagtggcatggacggaaatgtgatc
tttaactacaacaatctgcaagtttctaaggatgttactaaaaaggcaaaacatctggta
gactcaacaaacgccttaaaccaaacattcatcagtttcattgagacggtaacaacaaac
aagcctacgcccagtgttcgtgctgtgtatttgaactcctttttagctgtagtgaaaggc
ctgcgaaagtctctcactgcactggaagacagccttaaggaggaatttagggacctggat
gtcgggagcaattgggaaaatatcctcagaagtgactgcaaacgtcttatgagaaattca
gacattgagctggacatgtctgataaaagatgcttaagtaacttgcagaaactggcatct
gagcactttgaagacaatgacgctgactccaaaggatacattgacctcacaaatgactgt
tctgagaaggaactagattcaaattctgaaaacatcggcctgacgtcatcttcaagtgag
gttgacatgtctaaaaagctaattgtacaacttacacctgtacctatggagcagaaagaa
tcagccgatgtcccaaagttggacgaaaacttccctgaggaggaaaataaatctaaggaa
aaggatgcatcggaagaacaggttgttggaagtcctaaagatgagagacagatgagcatt
gacacggctagtacacctatcttgctgaaggagaaacaaggcaacagacgatcccctcgt
ttgaagacgactccgttgcggaggcaaagtgacatcacgatcaaaccatccctttcaggt
gtagacagcgagagtgactctgaacctgaggagacccctgacacagtgcctgccacgggc
aatgatgagcaaaatttgagccggtcaagagatgattcagattcagatgaagtacctgcc
gcccttcttgagcgggcagcgatgacgcacagctcagacgaacctcagagtgacgaagat
agaaaccaagcacctccggacaaggtagccaagaaatgcctgttttggctcaccaagaac
agtccgatgtcgccggagaagctgcggcgaaaacgcaagatgctggaccgctcatctgaa
tcggaatcgggcagcagagtagttaaagctcgacaggaaagtgggacagatttctcaagt
gatgatcaagactctcagaaggaaatacaacacttaaatacggtgaggtcgatcgggaag
cctcatctcatgagaagagaagaggaaggtgtggtgagaaagcagaagagaatgcaagct
agcgagtctaaagggaaacgccatcaggatgtgactgattcgtcatcctcgttgagcgat
gatgaacaagaagatgactctggcagcgacgtaagtgatcagaagatgaaaccgatcaca
gaaaatgttacatcactcggagtagcagcattccaacaatcctcaggagatgaagagcag
tctgggccctcatgggcagcagaagatgatgaagatcctgaaaatagaatcgctaagcaa
ttgctattggcccaaattaaagccaacctctcttcggatggggacatttcttccgaaggg
gaaactcaggaggatcagtctgaatcagatggcgacggggaacctagtcaaggcaatgag
gatgataatgcagcaaatactcgcagagaagacctggtttcagagacatcagacagcatg
cttgatgagccaaagtccaggcaccatcttcttcgccacaaactcacattagatgaggga
gcttccagtgacaagacagaacctgagggtgaagtagggatgcagaagagcaaaagaaga
accaggaggaaacgtctgttttctggtagtgagacttgtagtgaaggtagtgaagagacg
gagatgagcgaggagctaagtgagtccgaggatgaggctgctgaagatgagatcgagaga
tcaagcaaacgagaaaaggaagcaacttgtattgaactgaacaagcaagtgccctgcatt
ttattgtctgactccagtattgagaagagtgacgaggaggatgtaaatgaggagaacagc
gaaagtaaaggcaccccaaaaggacgcaaaaagatccgcaaaattatcgacgacgagaat
ctccgtgctgagactcaagaggccctcagagaggaagaggagagacgtcggcgtttggcg
gatagatcgcaacagatggaggactggagagagataactgtaatcccagatgagttgtct
caagtggaatgtcccgtcacaaccaagctggtcctggaccaggatgaagagaccaagatg
ccgcttgttcaggtgcacaggaacctggttacgaacctgaagcctcaccaagtggacggt
gtccagtttatttgggacagttgctgtgagtctgtgaagaaggccaactcttcccccgga
tcaggctgtatcctggcgcactgcatgggtttgggaaagactctgcaggtggtggccttc
cttcacacagtgctgctgtcatcaaacctgaagttcagaacagccttggtggtttgtcca
cttaataccctcctcaactgggtcagcgagttcaagagatggcagcacagccttggagaa
gatagagttaaggtttcagagatggctactgtgaagcatcttccggaacgtcttagagct
gtgcagacgtggcagagagacggaggggtcatgataatagggtatgagatgtaccgcaac
ctgtcccagaactctaacgccaccaacgaggagtgcaacaaggagctgaagagcgcatta
gtagatccaggtccggactttgtgatttgtgacgagggtcacattcttcgtaatgaatcg
tcacgcatctctaaagccatgaacggcatcaagacccagaggagattggtgctgacgggt
acaccgcttcaaaacaacctcgttgagtaccactgcatggtaaatttcatcaagaagaac
ctcctgggctccctgagtgagttcagaaaccgcttcatcaaccccatccagaacggccag
tgtgccgactccaccccaagagacgtgcggatcatgaagaagcgcgctcatgttctccat
gcggttttggctggatgcgtgcagagaagagattactcagagctaactcagtttctgcct
ccaaaacttgagtatgtgctgctggtgaggatctctccacttcagtataagctgtatcgc
tactacctcgaccatgttgcaagtgagggctcagcaactgggcaaaaacccctgaaaact
ggcgccaacctgttcaaggattttcaggtccttagccgaatctggactcatccatggtgt
cttcacctcagcgatctcggcaaagaaagcaggaggaagactttttataagaggaatcag
cttcagatgatcaatgtagagacgattgtggcggagagtggattgaaacagaacgaagga
aatgaacaaaatgtcaatggacagagtaccatgtctactgacagaccccaaactgtccga
gtggtggaaggtgagaaatcatccagcagctcgaggtgtcagagtccctttgaagcctgg
tacaggcatcggctgtctgaaagtgacgccagaatcatggagcattctgggaaaatggtg
ctcttgtttgaaatcctccgaatggccgaaaacctggatgacaaagtgctggtgtttagt
cagtccttgatctcactgaacctgattgaggatttcctcgcagcttctcacaatgctaga
gacccattattatccatcaaagagggcagctggattaaaaacgtggattactatcgactt
gatggttctgtcagcgccacatcgaggaagaaatgggcggatgagtttaataatgctgac
aactaccgtggcagactgtttctaatttcaacgagagccggatcacttgggatcaacctt
gcggctgctaacagggtcgtcatctttgacgcttcgtggaacccttcatacgacatacag
agcatatacagggtgtatcgcttcggtcagctgaaacaagtgtttgtgtaccgcttgttg
gctcagggaaccatggaggagaagatctacgatcgtcaggtgaccaagcagtctctgtcc
tatcgagtcgtagatcatcagcaggttgaaaggcacttcacttttcatgagctgactgaa
ctctacacatttgagccagacctgctcgatgatccaaactctaagaaaagcaagagaccg
acaccgattctcccgaaggacagcatcttagcagagctgttaaaaatctgtaaagaccgg
atagtgtcttaccatgagcatgaatccctgctggaccacaagcatgaggaggagctcagc
gaagccgagcgcaaagctgcgtgggccgagtacgaagccgagtcaaacacagtgaaactc
ccagccagctcaagccaggacagattgcagaagaagaccaatgagcagctactggaaata
ctcaacagaagcagagcaaatgtatcgctcgctttcctgaccctgcagaatatgaggatt
ccctctatagaggactacaaggtgcgactgcggcagcagtaccccttcctacctgaggtg
gagctgcagatcaaagctgagctttggagacaatctgacgtgaacagacgggacatcaca
cagtccttttatcaagactctctggcgcagcatcagtctctcacgttccagattcaggcc
ttactcaacagtcgacgaactcttgtgaatcccattactctgaacacttcaacccagcct
ggctag
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