Xiphophorus couchianus (Monterrey platyfish): 114152905
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Entry
114152905 CDS
T05908
Symbol
cnot10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114152905 (cnot10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114152905 (cnot10)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114152905 (cnot10)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_14
TPR_12
ARM_TT21
TPR_8
TPR_7
SRP_TPR_like
APOBEC4_like
Motif
Other DBs
NCBI-GeneID:
114152905
NCBI-ProteinID:
XP_027886845
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Position
11:6307387..6324514
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AA seq
732 aa
AA seq
DB search
MAENSELNEAKHNGSPSSGMTDQEKEMATSAYEAFLAGKYDESLKQLEALQELNKEDYKI
SLNKAVLEFYRSGQTATGSLKQTLSAMKNQLHTATEDVDGLDDVENSLLYYNQAIIHYHM
RQYSEAISIGEKLYQFLEPFEEKFAQSVCFLLVDLYLLTFQPEKALHLLAILDKIAVQGS
NKNGKAESNNSGSNQKVEFVAMMEAAKSKIHQYKVRAYIQMKSSKACKREIKSVMNTAGN
SAPSLFLKSNFEYQRGNYRKAVKLLNSSNMAEHPGPIRTGECVRCMFWNNLGCIHFAMGK
HNLGIFYFKKALQENDHTCAQLGDGGNNQCKRLSGVPMCALLFNKRYELLYNCGVQLLHA
ARPLAAFECLMEAVQVYHSNPRLWLRLAECCISANKGGSEQESKSLPSKKGIVQSVIGQG
YHRKIVLASQSSQNTNYSEGQSAAIPVASMEFAAICLRNALLLLPEHQQPEAKAESGSKN
SSQSGSTESGSENSDPCSGKSQEADKFFSATPSSPLRKQEVENLRCSILACSAYVALALG
DNLLALHHADKLLHQIKVSGSLRFLGHLYAAEALISLDRISDAITHLNPENISDVSLGVL
SSEQDQGHEKGDEPIEPSAKKMPLFYPSSVAAAQAMMLFNLGSAYCLRSEYDKARKCLHQ
AASVMNSKEIPPEAILLGVYLELQNGNTQLALQIIKRNQLLPSTLNRSSPDPRKKPSQPL
QLPSSFTHVQRK
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacagcgaattaaacgaggcaaaacataacggctcgccgtccagtgggatg
acggaccaggagaaggagatggcaacgagtgcatatgaagcttttctggctggaaagtat
gacgagtctctgaaacagcttgaagccttgcaggagctcaacaaagaggactacaaaatt
tctttgaataaagctgtgttagagttctacagaagtggccagactgcgacaggttcattg
aagcagaccctttcagcaatgaagaatcagcttcacacagccacagaagatgttgatggc
ttggatgatgtggagaatagtttgctgtactataaccaggccatcatccactaccacatg
cgccagtactctgaggccatctctataggagagaagctctaccagttcctcgaaccattt
gaagagaaatttgcccagtcagtgtgcttcctgttggtggatctctacctgctgacattc
cagccagagaaggcgctccacctgctggctattctggacaagatcgctgtacaaggaagc
aacaagaacggcaaggcagagagcaacaactcaggatcaaaccaaaaggtggagtttgta
gcaatgatggaagcagccaaatccaaaatccatcagtacaaagtgagagcgtacattcag
atgaagtcttccaaggcctgtaagagagagattaaatcagtgatgaacacagcagggaat
tctgccccctctctcttcctcaagagtaactttgagtatcagagaggaaactaccgcaaa
gcggtgaagctgctgaacagctccaacatggcagagcatcctggacccattagaaccggt
gaatgtgttcgctgtatgttctggaacaatctgggctgcatccactttgcaatggggaaa
cacaacctgggcatcttctacttcaagaaggcgctgcaggagaacgatcacacttgtgca
caactgggagacggcggcaacaatcagtgtaaaagactgtcaggtgtccctatgtgtgcc
ctgctgttcaacaagcgttatgagctgctgtataactgcggcgtccagctgctgcacgcc
gccaggccgctggcagccttcgagtgtctgatggaggccgttcaggtttaccactccaac
ccgcgcctgtggctgcgcctggctgaatgctgcatctctgctaacaaagggggctccgag
caggaaagcaagagtttacctagtaaaaagggaatagtccagtctgtaattggacaagga
taccatcgcaagattgttctggcatcacagtcttcacagaacaccaactacagtgaaggc
caatctgctgccatccctgtagccagtatggagtttgctgccatctgtctgcggaacgcc
ctgctgctgctgcctgaacaccagcagccggaagccaaggctgaaagcggctccaagaac
tccagccaatcaggaagcaccgagagcggcagtgagaacagtgacccctgcagtggaaaa
agtcaggaagctgataagtttttttctgcaactccatcgtctccacttcgaaaacaggag
gtggaaaacctcaggtgttccatcctggcttgtagtgcctatgtggcgctggccctggga
gacaacctgctggctctgcaccacgctgacaaactgcttcatcaaatcaaggtgtctggc
tccctcaggtttctgggtcacctgtatgctgctgaagctctcatctcattggacagaata
tctgatgcaatcactcacctgaacccagagaacatcagcgacgtgtcactaggcgtgctt
agcagcgagcaggaccagggacatgagaaaggagatgagcccatagagccatcagctaag
aagatgccgctgttttaccccagcagtgtggcagcagcgcaggccatgatgctcttcaac
ctgggcagcgcctactgcctgaggagcgaatatgacaaggcccgcaaatgcctgcatcag
gctgcatctgtgatgaactccaaagagattccgcctgaagccatcttgctgggcgtctac
ctggagctacaaaacggaaacactcagctggctctacagatcatcaagaggaaccagctt
ctaccctcaacccttaacaggtcctcgccagaccctcgcaagaaaccttcccagcccctc
cagctgccctcatcctttacacatgttcaacggaaataa
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