Xiphophorus couchianus (Monterrey platyfish): 114153001
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Entry
114153001 CDS
T05908
Name
(RefSeq) protocadherin-16-like
KO
K16507
protocadherin-16/23
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xco04515
]
114153001
Cell adhesion molecules [BR:
xco04515
]
Cadherins
Cadherin related
114153001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
RET_CLD1
Cadherin_4
TMEM154
CADH_Y-type_LIR
Motif
Other DBs
NCBI-GeneID:
114153001
NCBI-ProteinID:
XP_027887009
LinkDB
All DBs
Position
11:28452517..28542561
Genome browser
AA seq
3298 aa
AA seq
DB search
MPKTSKGSRRRAQVGRPCLLSSIGQHKLLCYIFIILFRSTLVYGALELQLDEGQPAGTIV
GDISAGLPPGETATLYFISDHEGTGVGSDLHIDETTGIITTARSLDREERDHYNFIAVTM
TGTTIQVSITVNDVNDHAPVFPKKKSVLKIPEHTAVGTRFSLDPATDADKDQLTTQGYTI
REGNVGQTFRLETKRGANKVLYLDLVVNGLLDREKRSSYTLVIEGFDGGSPRRIGSMTLE
VTVTDINDHAPVFNQSRYHAIISENLPQGSSILQVFATDEDEGDNGLVLYEINRRQSDPD
RYFVIDLKSGVITLNKPLDFELKRVHELVVQAKDNASQPEVTNAFVTIHVRDFNDNQPTM
TIIFLSEDGSPRISEGAQPGQYVARISVTDPDYGEYANVNVSLEGGDGKFALTTKDSIIY
LIYVDQILDREERDSYDLRVMATDSGTPPLRAESSFTIQVTDVNDNPPLFDQQAYRQTIP
EVVYPGSFVLQVTARDKDQGPNGDVRYSLLKGKNSRSDWFSIDPITGIITTATALDFESE
PAPSVTVVAMDGGRPPLSSTAKVDIVLQDVNDNTPVFSKSFYNASIKENTSAGTCFLEVS
ATDGDRGSFGTIAYTLGSNSGGTLPFTINKETGQLCTSTALDRDEGLDKFDLIVTATDGG
GLSSVSRVRVTVVDINDNRPTFYPVVYTVSLSTHSAPGTSVVKVTANDPDAGQNGKVTYR
TVPGGGSTFFTLNKDTGVISLSRSLHGKSNTVISMVISAEDGGGLTAPVNARVNVSVVGG
SVASPIFEQAQYFFTVSEDVLRGTAVGVVRAATKAGVSKGILYSISSGDPDGYFTVDSTS
GTIRTALPLDHETCSSLDLEIQARSGSPPAYANSHVRITISDVNDNAPTFLPSSSESLLL
PEITKMGTVIYRIQATDKDSGHNGQLSFDLISAGAAGSSGQRTFGVDRGSGEVRLIGSLS
YESVPRYDLQVIAKDGGAPQLSSTFTLVVHIQAQDAQGPTFDTLTYRVELRENTLLNTRF
LQVRALNKEASGNSGSSPSSSSVSYRLRPDGDAAGFGIMPDTGWLFVRSSLDREVKDMFL
LTVLATSGPGGAGRTGSATVRVTVTDENDNSPRLSQERVFLAVRENLLAGTGFGRVSATD
RDAGLNARLTYRLLHSDRHFQINSQTGEISTRLALDREQQSSYQLVVVVQDGGTPPRSAT
GTAHITVLDENDNAPNFTHVRPERELLFQVTEGLLSGTVVGTLSAKDPDEGENGTLHYSL
SGPRAERFSLNPTSGELRTDSPLRWADRAEYGFTVTAVDHGTPGLSSTCQIRIQVLSNSR
SSPTPNVLSMTLNTVEGTAPGSIIGSLQPPDHQDSTVQEGQVTYLVVGGTDRDGTFMVDR
LEGDVYLVRELDYEKGSRYTLHIEVSDFSQAFPSSHLVKLDINVQDSNDHAPEFSEDPVT
IVIQENIDPGASVYTFQAVDGDGSGPNSELRYSIEHHWPDTSDLLILDPVTGVLTLGKTL
DRETTPSLYLVVRATDQAVNPSQRHWGSVTARLFVTDENDNAPTFSSPSAVSVMEDQPVG
FVILYVVARDKDEGENGRVSYRIQAGNSAGRFTLNPNTGSLSILKALDREEQEVFNLTVV
AEDHGVPQLSTSQVLCVQVIDVNDEAPVFHQAEFEAQIMENRGPGTTVYTITATDRDQGS
NGHITYGGVTEDGFVINPLTGVIITTKELDTEVQDHYTLTVYARDGGLPANFAKAVVRVE
VQDVNDNIPIFAKSLYELEVPENQDPVELCFIKATDPDSGPGGELEYRIAAGDFDGAFQL
HPSTGALSTSRGLDRETIAEYNLEVVAKDRGSPPLSATATVRVKVLDVNDNSPVFKRNSY
NTEVSEDAAEGFQVLQVSATDADDDLNGKILYFLSQEAHGAFTVDEESGRITTSAPLDRE
KLASYSFQVFAVDLSPAMPRNSSAQVMVTILDVNDNAPFFIQDPLIIEVSNRRSQRVLAT
MKAEDKDFGANGSVFYRFATSVKGFSINSLTGEIQATEPLRDLTQAQRTLIVEAMDQGSP
AQSAQGVVVIFVKEVEYNGIRFSRNARDVSIQENAAKGTAVAQTQAQYPDGTRMGISYSL
FSGNKKQAFSISSSSGEIWVHSSQGLDFEDSPRLRLVVKAETVSSTSFMAINLVLQDVND
NLPRFQLQNYVAYMKEAQGYEMPIIQVVAEDVDQGQNGQVTYSIQSSSMSGLFKIDPMTG
SITTAAIMDREIFTKTKLVVTATDRGSPRLAGSSTLTVIIVDQNDNSPTIPLPQEVHIPE
NTLIGTEITLVTGNDVDSSPALSYSLQLDPTALGKFGIHRYSGGVSLTGPLDFEEKTWYT
LTVRATDSQHQTEANITIVVEDINDNAPTFTQGLYQITLPEHTPPGSAVITVTATDKDSG
DNGKITYRVMSSTQEGYYINPSNGTLFINHRAEFDPECPAVNIVIEARDGGSPPLFTLTT
VQVQISDVNDNSPVFHQSEYRATVSEDAIPGSTVLTFEAFDSDLSRENCGFDFAIASGNE
GNAFQIESSVRFLEGRGFQTVGTLLLAERLDFEIKPLYNLTVVVSDRGVPQRSSNVAAMI
TITDVNDNPPVFTRAEYTVSLSEGAASGTEIIRLTATDPDSTPNAEVQYTISSGDEVNLF
SIDQWTGAIKLEQTLDREHQSMHIIIIQATDGNGHFALAPVIVEVKDVNDNHPFFPVDVL
TASIQENQPANSAVTVLHAIDHDTGVFGQLKYYMVERSGKGKDNFVVDQNSGEIRSKFTF
DYEKINSFNFEALAVDSGNHSATVTVQVFVTGEDEYDPLFTSSEFSFEVPEGAKKGQSIG
QVQAQDEDEGVDGVVLYSITSNSPYFDVNKTTGVIFLKLDSSSSSSGGSGRAKRETRVMT
LDVKAHSPLDASRSTSTQISIDVTNTNFGLAADVNILLIIIIAVSLGVIILLVVLAVVVF
LVKSHRRKKGLDTEDRTLASGTALKKLDECTSGPGGDNIYHQTLPGYVADQGGAGGGPYP
RGGSLDPSHSSGRGSAEAAEDDEIRMINEYPRVASITSSMQEHISARGPDSGIQQDADQL
SDISCEPAALEGSTWFKGKKLGGSLSGTLLSGQLPVYRDEGGGYLGVGRGLNISLPKDYA
FPEDGKPSVDGSLTAIVASDEELRGSYNWDYLLNWCPQFQPLANVFTEIARLKDETTQQN
QNPRQPFQPKPKMDPKPRIDPPPLITSVAHPGAMTVPPKVPVIGRTFPHLSSLRRSPISH
EGSISSAAMSPSFSPSLSPLAARSPAVSPFGVNQGPSASMISTREPSLEQSPDHEMRI
NT seq
9897 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaacaagtaaagggtctagacgtagggctcaggtcggcagaccctgtctgctt
tcaagcattggccaacacaagctcctttgttatattttcattatcctatttcgatcaaca
cttgtttatggagcactagaactccagctggatgaagggcagccagcagggaccattgtt
ggtgacatcagtgcagggctgccacccggtgaaacagcgactctttacttcatctctgac
catgagggcacaggcgtcggcagcgaccttcacattgatgagaccactggcatcattacc
actgcacgcagcttggaccgagaggagagagaccactataacttcattgcggtgacaatg
actggcacaactattcaggtgtctatcaccgttaacgatgtcaatgaccatgcacctgtg
ttccccaaaaagaaatctgttctgaaaatcccagaacacacagcagttgggacaagattt
tccctggatcctgccactgatgctgacaaggatcagctgactacccaaggctatactatt
cgcgagggcaatgttggtcaaacatttagacttgagaccaagaggggtgcaaacaaggtt
ctctatctagacttggtggtcaatggactgctggacagagagaagcgctcatcgtacacc
ctggtgatagagggctttgatggaggctcaccaagaaggataggatctatgactctagaa
gtgacagtgacggacatcaatgaccatgcaccagtctttaatcagagcagataccatgca
atcatctctgaaaatcttccacaagggagtagcattttacaggtgtttgcaactgatgaa
gatgaaggtgataatggtttggtcctttatgaaatcaaccgtcgccagagtgatcctgac
cgttactttgtcattgatcttaagtcaggagtcatcactctcaataaaccactggacttt
gagctgaagagagtccatgagctggtggtacaggccaaagataatgctagccagcctgag
gtcaccaatgcatttgtgacaattcatgtccgtgatttcaatgacaaccagcctaccatg
actatcatcttcctcagtgaggatggctccccgagaatctcagaaggagcccaaccaggc
cagtatgtagctcggatttctgtcactgatccagactatggagagtatgcgaatgtcaat
gtctccctggaggggggcgatgggaaatttgctctaacaaccaaggacagcataatttac
ctgatatatgtggaccagatcttggacagagaggagcgggattcctatgatctcagggtg
atggccacagactcaggcacacctccccttagagcagagtcatctttcactatccaggtg
acagatgtcaatgacaaccctccactgtttgaccagcaggcctacagacaaaccattcct
gaggtggtctacccaggatcgtttgttcttcaggtaacggccagggacaaggaccagggt
cccaatggagatgtgcggtacagcctgctaaagggtaaaaactctcgctctgattggttt
tcaattgatccaataacggggataatcaccacagcaacagctcttgactttgaatcagag
ccagccccgagtgtaactgttgttgcaatggatggaggccgaccgccactgtcttccaca
gcgaaggtagatattgtgctacaggacgttaatgataacacgcctgtgttttccaagagt
ttctacaatgcttcaatcaaggagaacacctcagctggaacatgcttcttagaggtgtcg
gctacagatggggaccgaggttcttttgggaccattgcctacaccctgggttcaaattct
ggaggcacacttccctttaccattaacaaggagacgggccagctatgtaccagcacagct
ctagacagagatgagggattggacaagtttgatctaattgtgacagcaacagatggaggt
ggtctgagctctgtgtctcgcgtgagggtcactgtggtggacatcaatgacaaccggccc
accttctatccagttgtgtacacggtcagtctcagtacccacagtgctccgggaacctcc
gtggtgaaggtgacagccaatgaccctgatgctggacaaaacggcaaggtgacctaccgc
acagttcctggaggaggctccactttcttcactctcaacaaagacacaggtgtaatttct
ttgtcccgttcactccatggtaaatccaacacggttatttccatggtgatatcggccgag
gatggcggcggtctaacagcaccagttaatgccagagtcaatgtgagcgtggtgggaggt
tctgtggcatctcccatttttgaacaggcacagtatttcttcacggtttctgaggacgtt
ctgagaggcacggcggtgggagtggtccgtgctgcaacaaaagcaggggtttctaaaggc
atcttatactccatctcttctggagaccctgatggctactttacagtggacagcacctct
gggaccattaggacagctcttcctcttgaccatgaaacctgctccagtcttgatctagag
atccaggcacgctccggttctcctcctgcctacgcaaacagtcatgttcgaataactatt
tcagatgtcaacgacaacgcccccacctttctcccctcctcatcggagtccctccttttg
cctgaaataaccaaaatgggaacagttatctaccgtattcaggccacagacaaagactcc
ggtcacaacggtcagctcagctttgacctcatctctgccggggctgcaggcagcagtggc
cagaggacatttggtgttgaccggggcagcggggaggtacgcttgattggaagtctttcg
tatgaaagtgtcccacgctatgatcttcaggtgatagcgaaggatggtggagcacctcag
ctcagttccaccttcactcttgtggtccacatccaagcacaggatgcacaaggccccacc
ttcgacaccctcacctacagggtggagctacgggagaacacgcttctcaacacacgtttc
ctgcaggttcgagcactcaacaaagaggcttcagggaattctggaagctctccatcttca
tcctcagtttcctaccgcctgaggcctgatggtgatgcggctggatttggcatcatgcca
gacactggatggctgtttgtgcgaagctctctggaccgagaggttaaagacatgttccta
ttgaccgtcctagctacctcaggcccaggtggagcaggaaggaccggcagcgccactgtc
agggtgaccgtaactgacgaaaatgacaattccccgaggctgagccaggagagagtgttc
ttggcagtccgagagaatttattggcaggaaccgggtttgggagagtgtctgcgacagac
agagatgcaggactaaatgctcgactcacgtacagactgctccactcagacagacacttt
cagatcaactcccaaacaggggaaatcagcacccgcctcgcccttgacagagagcagcag
tcgagttatcagcttgtggtggtcgtgcaggatgggggtacccctcctcgaagtgccaca
ggcactgctcacataaccgtgctggatgaaaatgacaatgcccccaatttcactcatgta
agacctgaacgggagctgctatttcaggtaacagaggggcttctatcagggactgtggtg
ggaactctgtcagctaaggacccagacgaaggggagaatggtaccctgcattactctttg
tcaggacccagagcagagcgtttctccttgaaccccaccagtggtgagctgagaactgat
tcacctctgcgatgggcggacagagccgagtacggatttaccgtgaccgcagttgaccac
ggcactccaggcctcagctcaacctgccaaatccgtatacaggttctcagcaactccagg
tcatccccaacacccaatgtcctttctatgaccctgaacactgttgaaggcactgctcct
ggctccattatcggctccctacagccacctgaccatcaggattctactgtgcaggaaggc
caggtgacctacctggtggtgggaggaaccgaccgggacggaacctttatggtggaccgc
ctggagggcgatgtttatctggtgcgcgagctggactatgagaaggggtcaagatacact
ctgcacattgaggtgtctgatttctctcaggcgtttccaagcagccatctagtcaagctc
gacatcaacgttcaggatagtaatgaccatgctcctgagttttcagaagacccagtgaca
attgtgatccaagaaaacatagatccaggggcttctgtatacacattccaggctgtggat
ggggatggcagtgggcccaacagtgagctacgttattccattgaacatcactggcctgac
acatctgacctcctgatccttgatcctgttactggcgtccttacattggggaagacgtta
gaccgtgagactaccccgtccctctatcttgtggtgcgagccacggaccaggcagtgaat
ccatctcagcggcactggggctcggtcacagcacggctgtttgtgacggatgaaaacgac
aatgctccaacatttagctctccatctgcagtgagtgtcatggaggatcaacctgtcggg
tttgtgattttgtatgtggtggcacgcgataaagatgaaggtgaaaatggcagagtatct
tacagaatccaagcaggcaatagtgcaggtcgtttcactctcaatcctaacacaggctcc
ctctctatccttaaagccctggaccgggaagagcaggaggtcttcaatctaactgtcgta
gcagaggatcatggggtaccgcagctctccacctcccaggtgttgtgtgtgcaggttatt
gatgtgaacgacgaagcgccggtgtttcatcaggctgagttcgaggcccaaataatggaa
aatcgaggaccaggaaccactgtatatactataacggccacagatcgagatcaaggttct
aatggtcatataacatatggaggtgttacagaagatggttttgtcataaatcctttgaca
ggagtcatcatcaccacaaaggaacttgacacagaggttcaggatcattacacactcact
gtgtatgccagagatggaggactgcctgcaaattttgccaaagctgttgtccgtgtggag
gtccaggatgtgaacgacaacattcctatatttgcaaagtcgttgtatgaactcgaggtg
ccagaaaaccaggatcctgtagagctttgctttatcaaggccacagatccagactctggt
cctggtggagaactcgaatacagaattgcagcgggagactttgatggagccttccaactc
caccctagcacgggagctctgtccacctcacgcggacttgacagggagacaattgcggaa
tataacttggaggtggtggccaaggaccgagggagtcctcctctcagtgctactgccaca
gttagagtgaaagtgttagatgtcaatgacaacagcccagtttttaaaagaaacagctat
aacacggaggtctctgaggatgctgcagagggttttcaagttctgcaagtgtcagcaaca
gatgctgatgatgatcttaatgggaagatcctgtattttcttagccaggaggcacatgga
gcattcacagtcgatgaagagagtggtcgtatcaccacgtcagcacctttggatcgggaa
aaattggcgtcatacagctttcaggtgtttgctgtggacctttctcctgctatgcccaga
aactcttctgctcaggtgatggtcaccattcttgatgtcaatgacaatgctcccttcttc
atacaagacccgttgatcatcgaagtttccaacaggcgttcccagcgtgttttagccact
atgaaggctgaggataaggactttggtgccaacggttctgtcttttatcgctttgccaca
tctgtgaagggcttcagcatcaattcactgactggggagatccaggccactgaaccgcta
agagaccttactcaggctcaaaggaccttgatagtggaggccatggaccaagggagccca
gcacagtctgcacaaggagtggtggtaatttttgtaaaggaagtggagtacaatggcatt
cgattctcaaggaatgctcgagatgtcagcatacaggaaaatgctgcaaaaggcacagca
gtggctcagactcaggctcagtatcctgatggcacacgtatggggatcagctatagtctt
tttagtgggaacaaaaagcaggctttcagtatcagctcctcatcaggtgaaatttgggtg
catagctcccagggactagattttgaggacagtccccgactccgtcttgttgtgaaagct
gaaactgtgtcctccacatcattcatggctattaatttggtgcttcaggatgttaatgac
aaccttcctcgcttccagttgcagaattatgttgcctacatgaaagaggcacaaggatat
gaaatgccaattatacaggtggtggccgaggatgtggatcaagggcaaaatggtcaggtg
acctactccatccagtcatcaagcatgagcggcctgtttaagatcgacccgatgacagga
agcatcacgacagctgccatcatggaccgggagatctttacaaaaaccaagctagtagtt
actgcaacagacagaggaagtccaagattggctggttcatctacactgacagtgataatt
gttgatcagaatgacaacagtcctactatccccttacctcaggaggttcacatcccagaa
aatacattaatcggcacagagattactcttgtgacgggcaacgacgttgactccagccct
gccctgtcctactccttgcagcttgacccaacagctttaggaaaatttgggattcaccgt
tacagtgggggtgtatcactcactggcccgctggactttgaagagaaaacatggtacacc
ctaactgtcagagccacagacagccagcaccaaactgaggcaaacattacaattgtcgtg
gaggatattaacgacaatgcacctacattcacccaaggtctctatcagattaccctgcct
gagcacacaccacctggaagtgcagttatcacagtaacagctactgacaaggactctgga
gataatggaaagatcacctacagagtgatgtcgtccactcaggagggttattatattaac
cccagcaatggaaccttgtttatcaatcaccgagctgagtttgaccctgaatgcccagca
gtaaacattgtcattgaagctcgagatggaggctcacctccactcttcactcttactaca
gtccaagttcaaatatctgatgtcaatgacaattctcctgtgtttcaccagtcagagtac
agggctacagtttctgaagacgccatcccagggtcaacagttttgacctttgaggccttt
gacagtgacctgtcacgagaaaactgtggctttgactttgccattgccagcggaaatgaa
ggaaatgcatttcagattgagagcagcgtacgtttcctggaaggacggggctttcagaca
gtcggaactctgctattggctgagaggcttgactttgaaatcaaaccactttataacctc
actgtggtggtgtcagaccgaggtgtcccccaaaggagttctaatgttgctgcaatgata
accatcactgatgttaatgacaaccctccagtgttcactagagcagaatatactgtgtca
ctcagcgagggagcggcctctgggactgagattatacgactgactgcaacagacccagac
tcaactcccaatgccgaagtccaatataccatcagctctggagatgaggtgaacctattt
tccattgaccagtggactggagccattaagcttgagcaaacacttgaccgcgaacaccaa
tctatgcacattatcattattcaagccacagatggcaatggccattttgcactagctcca
gtcattgttgaagtaaaggatgtaaacgacaaccatccattctttcctgtggatgtccta
acagccagtattcaggaaaaccagccagcaaactcagctgtgactgttctccatgccata
gaccatgacacaggggtttttggccaactgaagtactacatggtggagaggtctggaaaa
ggaaaggacaactttgttgtggaccagaattcaggagaaattcgaagtaaatttacattt
gactatgaaaagatcaactccttcaattttgaagccttggctgtggattcaggcaaccat
tcggcaactgtaaccgtacaggtgtttgtcacaggtgaagatgagtatgacccactgttc
acttccagtgaattctccttcgaagtgccagagggcgccaagaaaggccagagcattggc
caggttcaagcacaggatgaggatgaaggagtggatggtgttgttctctactctataact
tccaactcaccatattttgatgtaaacaaaactactggtgtgatttttcttaagttagat
agttccagcagcagcagtggtgggtcaggccgggctaaacgggaaaccagagttatgacc
ctggatgtaaaagctcacagtccacttgatgcctctcgttctacatccacccagatctcc
attgacgtcactaataccaactttggcttggctgctgatgtaaacatactgcttattatt
atcattgctgtatctctgggagtcatcatattacttgtagttttggctgtggtagttttc
cttgtcaagtcacacagaaggaaaaaaggtctagatacagaagacaggactcttgcatca
ggaactgccttaaagaaattggatgaatgcacctcgggacctggaggagacaatatttac
caccagactttgccaggttatgttgctgatcagggaggagctggtggtggtccctaccct
agaggaggctctttggacccctctcattccagtggtagaggatcagctgaggcagcagag
gatgatgaaatccgaatgattaatgagtaccctcgcgttgcctctattacctcgtccatg
caggaacacatctcagccagaggaccagattctggaattcagcaggatgctgaccaactt
tcggacatatcctgtgaacctgcagctttggagggaagcacgtggttcaaaggaaagaaa
ctgggtggcagtctgagtgggaccttgctttctggccagctcccagtctacagggacgaa
ggaggtggttacctaggagtaggtcgtggtttaaatatttccctccccaaggattatgcc
ttccctgaggatggtaaaccatcagttgatggttcgctcactgctattgttgcgagtgat
gaggagcttcgtggaagctataactgggattacctgctcaactggtgtcctcagttccaa
cctctcgccaatgtcttcactgagattgccaggctaaaagatgaaaccactcagcaaaat
cagaaccctcgccaaccctttcaacccaagcccaaaatggatcccaaacctagaatcgac
cctcctcctctcatcacatcagtggctcaccccggggctatgaccgtgccccctaaagtc
cctgtaattggacggacattcccccacttgtcctctcttcgtaggtctcctattagtcat
gaaggatcaatttcctcagcagcaatgtcgccaagcttctctccttccctgtcacctttg
gctgctcggtctccagctgtttctccatttggagtcaaccaagggccatctgcatcaatg
attagcaccagagagccttcacttgagcaaagtcctgatcatgagatgagaatatga
DBGET
integrated database retrieval system
