Xiphophorus couchianus (Monterrey platyfish): 114153079
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Entry
114153079 CDS
T05908
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04137
Mitophagy - animal
xco04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
114153079 (rabgef1)
04137 Mitophagy - animal
114153079 (rabgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114153079 (rabgef1)
Membrane trafficking [BR:
xco04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
114153079 (rabgef1)
Protein recycling
Other Rab GTPase associated proteins
114153079 (rabgef1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
Zn-C2H2_12
FANCI_S1
NuA4
Motif
Other DBs
NCBI-GeneID:
114153079
NCBI-ProteinID:
XP_027887169
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All DBs
Position
11:complement(7793805..7800273)
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AA seq
507 aa
AA seq
DB search
MSQRTERRGIHVDQSDLLCKKGCGYYGNAAWQGLCSKCWREEYQRVRQKQIQDDWALAEK
LQREEEEAYASSHVAHGAAAPGHAAGHTTLTPFSKFEEKKTNEKTRKVTTVKKFFSPSSR
TATKKEPPEGKSASPSISRRASFDSDQVSKDFVEFLKNLHKPGREIHKQCRAFLVSMSSK
KDLGADELSECVQDFYQSLADRLMSHFKGSSESVDQVMDQVEKYIMTHLYKSVFCPETTD
DEKKDLATQDRIRALHWVTVQMLCVSVEEETAEVSENVVRAITDIIEMDSKRVPRDKLAC
ITRCSKHIFSAIRITKNEPASADDFLPALIYIVLKANPPRLQSNIQYITRFCNPSRLMTG
EDGYYFTNLCCAVAFIEKLDAQSLNLSQDEFERHMSGHASPRRSGSEDGRPDGGPGVSSA
AGPVLARLSHNLQMLSGLSARQEAVTAAALGLRADLLTWTDGVRRDVRHILDRYPLDTKA
SKASAIDANSVDGENLPAPIKPRMFIG
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcggacggagcggcggggcatccacgtcgaccagtcggacctgctgtgcaaa
aaaggatgcggttactatggcaacgccgcatggcagggcctttgctccaagtgctggcgg
gaagagtaccagcgggtccggcagaagcagatccaggacgactgggccttggcggaaaag
ttacagagagaggaggaggaggcgtacgccagcagccacgtggcgcacggcgcggctgca
ccgggtcacgcggcgggtcacaccacgctcaccccgttctcaaagtttgaggagaagaaa
accaacgagaaaactcgcaaagtgacaacggtgaagaagttcttcagcccttcgtctaga
accgccactaagaaagagcctccggagggaaagtcggcgtctccgtccatcagccgccgc
gccagcttcgactccgaccaggtgtccaaagacttcgtggagttcttgaagaaccttcac
aaacccggcagagagatccacaagcagtgccgggccttcctggtcagcatgtccagcaag
aaggacctgggagcagacgagctgtcggagtgcgttcaggatttctaccagagtttggcc
gaccgcctcatgagccattttaaagggtcgtcagagtcggtggatcaggtgatggaccag
gtggagaaatacatcatgacccacctgtacaagagcgtcttctgtccagaaaccacggac
gatgagaagaaggacctggcaacccaggaccggatcagggcgctgcactgggtcaccgtc
cagatgctgtgtgtgtccgtggaggaagaaacggccgaagtgtcagaaaacgtggtcaga
gccataacagacatcatcgagatggactcgaagcgcgttccgcgggacaagctggcctgc
atcactcgctgcagcaaacacatcttcagcgccatcaggatcaccaagaacgagccggcg
tccgccgacgacttcctgccggcgctcatctacatcgtgctgaaggccaacccgccgcgg
ctgcagtccaacatccagtacatcacccgcttctgcaacccgagccggctgatgaccgga
gaggacggatactacttcaccaacctgtgctgcgccgtggccttcatcgagaagctggac
gctcagtctctcaacctctcccaagatgagtttgagcgccacatgtcgggtcatgcctcg
ccccgacgcagcggctcggaggacggacggcccgacggcggtcccggagtcagcagtgcc
gccggcccggtcctggcccggctcagccacaacctgcagatgctgtcgggtctgagcgcc
cggcaggaggccgtgacggcggcagcgctcggcctgcgggccgacctcctgacctggacc
gacggcgttcggcgggacgtccgccacatcctggacaggtatcctctggacaccaaggcc
tccaaggcttccgccatcgacgccaacagcgtggacggcgagaacctgccggcgccgatc
aagccccgcatgttcatcggctag
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