Xiphophorus couchianus (Monterrey platyfish): 114153216
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Entry
114153216 CDS
T05908
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04270
Vascular smooth muscle contraction
xco04625
C-type lectin receptor signaling pathway
xco04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
114153216
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
114153216
09153 Circulatory system
04270 Vascular smooth muscle contraction
114153216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114153216
Membrane trafficking [BR:
xco04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
114153216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
RhoGEF
PH_16
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
DUF1456
Motif
Other DBs
NCBI-GeneID:
114153216
NCBI-ProteinID:
XP_027887411
LinkDB
All DBs
Position
11:complement(11452696..11497738)
Genome browser
AA seq
1330 aa
AA seq
DB search
MNVVILVPNQIESTGLSGPRAFSQTKTQSMGNPLKHEFDPTGLVQRCVIIQRDKNGFGLT
VSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKVNGTLVTRSNHKEVVKLIKSGSYVALTVL
GRPPGLSQMPLEEAQEQEEHEEVSMPLPLSAPNSPALSGVERSSFLSGSPQNHNKCTLSD
GDGASGPRIRDEDEQDDGSLLKEQTGEEAPPTSSNATHSTPVPEASGKRESPLQSPDVCR
RDDLNSCSSPDTEDAPDTDSSPHSSVASPPYTVNPQIIGAEDDYFDYQQEQINGECSCFQ
SIDLLKSRPAHLAVFLHHVVSQFEAAPLLCYLYAEMHKQTSSKESRRFFMEFHSLFLDRT
ANLKVPVPETIAAELEKRRLELIPEDLCKQYTQVLQDSLLSDLLKNLEDFRQKRSMGLTL
AEDELSKLDSERGKDQPALEKECACAEHILAKIEDILPTTQASEEEKCQAMQYVILTYMK
HLGVKVKEPRGLEQKRARITFLPKIKRGSKPEKDGDWKKPRFPNLLVPPRRLSRVDSTLV
VKSVELNKQRSPKFSQPAFVIPEPADHPASNPGRSRANQLSQGSDTSTQSTISVASLGPS
SADSTGQETDTSVSPFCIQSRLSDGLQAAEHQDSLSSPISTQFDFSPSSVDHREDDQDAF
RMEIQPTVGSADFQSEDDQAGEVESEEDPLNWQKLVPRGVLASLTSKEIKRQEVINELFI
TERAHLRKLRVLDGVFCQRLSRHGILPPDDIKHIFTNLEEIIQLHVSITEQMTAIRKRSE
TSVIGQIGDDLLAWFSEEEEKIKRAIGMFCSNQPSALELIKTRQKKDQRFNLFMQEAESN
RLCRRLQLKDIIPVEMQRMTKYPLLLDNIAKYSEDGEEREKVKKAGECCKKILNHVNQAV
KEAENKQRLVEYQRRLDVSSLKQSENPMILELRNLDLTKREMVYEGPLSWKVNKDKTIEL
YTLLLEDIMVLLQKQDERLVLKFHGKNLTSIPDAKHSFSPVIKLSTVLVRPVATDNKAFF
VLSMSENGVQMYELMAQKVSDRRTWQCLITQCADAMKAKAHPSDRPPAQAEAERVAVEIL
NQEMPKQSETLTESIHSADKDAPCSLDIQSPINPFDGLKSEDEEEELAAIVRQEEDGEEE
EVDEAELEAFLDGQLTDRLLQEGSRQGIALPAEDMESNFPSSKAEEALRTLAMLKETLYS
HMMSREVEEETEENKPSSAGPTNDLQLSSAPTGASESAQPNGGFAGLDFEAGSGESSTDD
DVAIDMRKLLSSSSQAGGDGPDLSRQLMTHLRLLQADLQYLQEVEMKYNELQQIHNNRST
DSDDNNEGLQ
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atgaatgttgtgattctggtccccaatcaaattgagtccactggactatcaggacccaga
gcgttctcacagacaaaaacacaaagcatgggaaatcctcttaaacacgagtttgaccca
acaggtctggtccagcgctgtgtgattatccaaagagataaaaatggctttggtctgaca
gtaagtggagacaaccctgtgtttgtgcagctggtgaaggaagatggagctgcaatgaga
gccggtgtccaaacaggagatcggatcattaaggttaacgggactttagttactcgttca
aaccacaaagaggttgtaaaattaatcaaatcgggttcctatgtagcgctgacggtgctg
gggaggcctccaggcctttcccaaatgcccctggaggaggcgcaggagcaggaagaacat
gaagaagtcagcatgcctcttcctctatcagcccccaactcacccgcactgtccggcgtg
gagcggagcagctttttgagtgggagcccccagaaccacaataaatgcactctgtctgat
ggggacggagcttcggggcccaggatccgtgatgaagatgagcaagatgatgggagtctc
ctgaaggagcagaccggtgaagaagcgccaccgaccagcagcaatgctacgcacagcact
cccgttccagaggcatctggaaaaagggaatcgccacttcagagtccggacgtttgccgc
cgagatgacctgaattcctgctcgtcccccgacactgaagacgctcctgacactgactcc
agtcctcattcttctgtggcaagccctccatacaccgtaaacccccagataatcggagcg
gaggacgactactttgactatcaacaagaacagattaacggcgagtgcagctgttttcag
agtattgacttgcttaagtctcgacctgctcatctggctgtgttcctccatcatgtggtg
tcccagttcgaggcggctcctctgctttgttatctctatgcagaaatgcacaaacaaacc
agctccaaggagagtcgacgcttctttatggagttccactctctcttcttagatagaaca
gcaaatctaaaagtaccagttcctgaaacaatagcagcagaattagagaagcgacggttg
gagctgatcccagaggatctgtgtaaacaatacactcaggtgttacaagactctcttctg
tcggacctgctcaagaacctggaggacttcagacagaagcgcagcatgggtctgaccctg
gctgaagacgagctgtctaagctggactcggagcggggcaaggaccagccggcgctggag
aaggaatgcgcctgtgcagaacacatcctcgccaagattgaggatatcctgccaacgact
caagcctccgaagaggagaagtgccaagctatgcagtatgtgattctgacctacatgaag
catcttggggtgaaagtgaaggagcctcgcggtcttgaacaaaaacgtgcacgcatcacc
ttcctgcccaagattaagagaggaagcaaacctgagaaagatggtgattggaagaagcct
cggtttcccaacctccttgttcctcctcgacgtttgagcagagtggactccactttggtg
gttaagtctgtggagctcaataagcagcgctctccaaagttctctcagccggccttcgtc
atccctgaaccagccgaccatcctgcctcgaaccctggacgcagccgagccaatcagctc
agccaggggtcggacaccagcacccagtccaccatctctgtcgcctccctgggtcccagc
tccgccgactcgactggacaagaaacagacaccagtgtctctccattttgcatccagtcg
agactcagtgacggcctgcaggctgcagaacaccaggacagcctctctagtccaatcagc
actcagtttgacttcagcccgtccagtgttgaccaccgagaggacgaccaggatgccttc
aggatggaaattcagcccacggtgggttcagctgacttccagagcgaggacgaccaggca
ggagaggtggagagtgaggaggaccctctgaactggcagaaactcgtccctcgaggcgtc
ttggcgagtctcacttcaaaggagatcaaacggcaggaagtcatcaatgagctgttcatc
actgagcgcgctcacctgcgtaagctgcgggtgctggacggcgtcttctgccagagattg
agcagacacggcatccttccgcccgacgacataaagcacatcttcactaacctggaggaa
atcattcaactgcatgtttcaataacagagcaaatgaccgccatcaggaagaggagtgag
acctctgtgattggtcagattggagatgatctcctggcatggttcagcgaggaagaggag
aagataaagagagcgataggaatgttctgcagcaaccagccgtctgcgctggagctcatc
aagaccaggcagaaaaaagaccagaggttcaacctatttatgcaggaagctgagagcaac
cgcttgtgtcgcaggctgcagctaaaagacatcattcctgtagaaatgcagcgaatgaca
aagtacccgctcctcctggacaatattgcaaaatactctgaggatggtgaggagagggaa
aaggtgaagaaagctggagaatgctgcaagaagatcctgaaccacgtcaaccaggccgtg
aaagaggctgaaaacaaacagagactagtggagtatcagcgtagactcgacgtctcgtct
ctgaaacaaagtgaaaaccccatgatcctggagctcaggaatctggatttgaccaagagg
gagatggtatatgagggcccgctctcctggaaagtcaataaggacaagactattgagctc
tacacgcttcttttggaggacatcatggttctacttcaaaaacaggatgagcgtttggtt
ctcaagttccatgggaagaacctgaccagcattccggatgccaagcatagtttcagcccc
gtcatcaagctcagcaccgtcctggttcgccctgtagcaaccgacaacaaggccttcttt
gtcctgtccatgtcagagaacggggtccagatgtacgagctgatggcgcaaaaggtgtcc
gacaggagaacgtggcagtgtctgattacgcagtgcgctgacgccatgaaggccaaagct
caccccagcgacaggcctccagctcaggcagaagccgaacgggttgcagtcgagatcctg
aaccaagagatgcccaagcagagcgagacgctgactgagagcatacattcagcagataaa
gatgctccatgttctcttgatattcaatctcccatcaacccctttgatggcttgaaatca
gaagatgaggaagaggagctggcggctatagtcaggcaggaggaagacggggaggaagaa
gaggtggacgaagccgagttggaggccttcctggacggccagctgactgacagactctta
caggaaggatcccgccagggcatcgctcttccagctgaggacatggagtcaaactttccc
tcctccaaagccgaagaggctctgcggacgctggccatgctgaaggagacgctttactcc
cacatgatgagcagagaagtagaggaggagacagaggagaacaaaccgtcttctgcagga
ccaacaaatgacctgcagctctcttctgcccccaccggggcgtctgaatcagcacaacct
aacggtggttttgcgggtctggactttgaagccggttctggggagagcagcaccgacgac
gacgtcgcgatcgacatgaggaagctgctgtcctcctcctcacaggcagggggcgacggc
cccgacctgagcaggcagttgatgacccacctgcgcctcctgcaagccgacctgcagtac
ctgcaggaagtagagatgaagtacaacgaactgcagcaaatccacaacaaccgatctaca
gactcagatgataacaacgagggactgcagtga
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