Xiphophorus couchianus (Monterrey platyfish): 114153358
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Entry
114153358 CDS
T05908
Symbol
scaf4
Name
(RefSeq) splicing factor, arginine/serine-rich 15 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xco03021
]
114153358 (scaf4)
03041 Spliceosome [BR:
xco03041
]
114153358 (scaf4)
Transcription machinery [BR:
xco03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114153358 (scaf4)
Spliceosome [BR:
xco03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
114153358 (scaf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
114153358
NCBI-ProteinID:
XP_027887657
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All DBs
Position
11:complement(28316064..28330030)
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AA seq
1218 aa
AA seq
DB search
MEAVNAFNQELFSLMDSKPPISRAKMISITKSAIKAMKLYKHVVQIVEKFIKKCKPEYKV
AGLYVVDSIVRQSRHQFGPDKDVFGPRFTKNITGTFENLCLCPIEDRSKIVRVLNLWQKN
GVFKIEVIQPLLDMAAGSGSGAASITHTEEPGSPPSPAKEPVTVVTANSIPTAAPPLHNS
DAFAAVAQLFQSSQGQQLQQMLQNFQQQAVKPETNTQPLLLTAQMPVQSAPTGLAAVAAQ
PHLSSPQRPPPVHSTQPVQQKTTFDMKLLDRFDYDDEPDVGEETKKDEASSQPPFMQQPP
AFPQHMEHFNTQMMNISQDITQQVSVPPNGQLQAGVVLPGQGYPVTMPTMGHSLPGHHIP
GSTGLPGFPGIYPPQNAAQQQQDSSVDMDHSLMRDGRHGRRSHSGSRSPKRRRSRSSSRS
RRSRHRRSRSRSRDRRHHSPRSRSQERRERERERERRQKGLPPPKSETLSICSTTLWVGQ
LDKRTQQQDVASLLEEFGQIESINMIPPRGCAYIVMIHRQDAYRALQKLSRGSSKVNQKA
IKIAWALNKGIKPDFKQYWDVELGVTYVPWSKVREDQLEELKEGGMLDMDTLSPDWSSMR
KTFDHLEEPTHNGRSEQQQPEETQVLPMAVAASHPVQVPSLQQPMVAMGSLQPPVFPGPI
GMPPPGFAPGIPLPPFIRPGFNPLQMPPGFPASGPMSLGPLPPSKGGVDDPPQDPPGQGA
KKKDEVLEGPNLFNHQMGHMGPPGGFPGGPLTNSTGGHPVGLLVGHPGGPPVGHPGGPPV
GHPGGPPVGHPGGPPVGHPGGPPVGHPAGPPVGHPAGPPVGHPGGPPVGHPGGPPVGHPS
GPRVGHPGGLQVGPPGPGGHPGNIQSPLGGLLGARPGMMPLQRPQGPPPSHMQRFPPPQG
QRPPHPNVPPGPPQLIPRGPHPQMMRHELPQPKGGFGMPPLHNMRGPFPRGHGPPHQGPA
PFTRPGGPRSFEGQEEMDDRPLRGDRPGFRDREQERDRDWDRDRDRERDRGFGGGRRFGD
GGRGGGSDKMDGRDRLGGWQEDVGNSRGGGWERDRDRDRDRDRRDWRERRGSLDKDRDRG
RSDDGERDRGRAEGGERSRGEGGSRDKTRAPEVKADKPRRSERRERTSRWDKDDRLAELE
NMDKFRSSNSTEQPGGTPLVTVETRKEPNGEATKKKEESEHLLAGPIPAAENAQSSESKE
LAQNESTATKEEKDAAAS
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaacgcctttaatcaggagttattctccttaatggactccaagcctcct
atatctcgagcaaagatgatctccatcaccaaatcagccataaaagctatgaaactctac
aaacacgtggtccagattgtggaaaagtttatcaaaaagtgtaagcccgagtataaagtt
gctggcttgtatgtggttgattccattgtgaggcagtccaggcatcagtttggaccagac
aaagacgtgtttggtccaaggttcaccaaaaatatcacaggaaccttcgagaacctttgt
ctctgtcccatagaggaccggagtaagattgtgcgggttttgaacctgtggcagaagaac
ggagtgtttaagattgaggttattcagccgctcttggatatggctgcaggttctggcagt
ggtgctgcttccatcacacacacagaagagccaggttcaccaccgtctccagccaaagag
cctgttaccgtagtaacagccaactccatcccaacagccgctcctccactacacaactct
gacgcctttgctgccgtagcacagctcttccagtcttcgcagggtcagcagctacagcag
atgctccagaactttcagcagcaggcagttaagcctgaaaccaacactcaacctcttctg
ctgactgctcaaatgccggttcaaagcgcgcctactgggctggctgcggttgctgctcag
cctcacctctcctcacctcagcgtcctccacccgtccactccacccagccggtccagcaa
aagacgacttttgacatgaagttgctggaccgttttgactacgatgatgaaccagatgtt
ggagaggaaactaagaaggatgaagcctcctcacagcccccttttatgcaacaacctcca
gcctttcctcagcacatggagcactttaatacacagatgatgaatatctcacaagatatc
acacagcaggtttcagtgcctcctaacggccagctgcaggctggtgttgttctgccagga
caaggctaccctgttaccatgccaacgatggggcactctcttccagggcaccacattcca
ggttcaactgggcttccaggcttcccagggatataccctcctcaaaacgctgcccagcaa
caacaggactcctcagtggatatggaccattcattaatgagagatggccggcatggtcga
cggtcccactcaggctcaagatctccaaagaggagaaggtctcggtccagttcccgctcc
cgacggtccaggcacaggcgatctcgctcccgctccagagatcgtcgccaccactcacct
cgctctcgctcacaggagcgccgggagagagagagagaaagagagcggcggcagaaaggc
cttccgccgcccaagagcgagactctgagcatttgtagtactacactgtgggtgggtcag
ctggacaagagaactcaacagcaagacgttgcctcgttgcttgaagagtttggacagatt
gaatctataaatatgattcctccaagaggctgtgcttacattgtcatgatacacaggcaa
gatgcttacagagcactgcagaaactcagtagaggatcgtcaaaagttaaccagaaagca
attaagattgcttgggctttgaataagggtataaagcctgattttaaacagtactgggat
gtggagctgggtgtcacctacgtaccctggtctaaagtcagagaggaccagttagaggag
ctgaaggagggaggaatgctggatatggataccttatcaccagactggagcagcatgaga
aagaccttcgaccaccttgaggaacccacacacaatggccgttctgagcaacagcagcca
gaggagacacaagtgttaccgatggctgttgcagcttctcatcctgtacaagtcccttca
ttgcaacagccaatggttgctatgggttccctccaacctccggtctttcctggtcccatt
gggatgcctccacctggctttgctccaggcattccccttcctcctttcatcagacctggc
tttaacccgttgcaaatgcccccaggttttcctgcctcaggacctatgtccctcggtcca
ctacctccttccaaaggtggagttgatgacccgcctcaagacccaccaggtcagggcgcc
aagaaaaaggatgaggtcctggagggtccaaatttatttaaccaccaaatggggcacatg
ggacctccaggaggttttccaggtggacctctaactaattctactggtggtcaccccgtt
ggtcttcttgtaggacatcccggcggtcctccggttggacatcccggtggtcctccggtt
ggacatcccggcggccctccagtcggacatcccggcggccctccagtcggacatcccggg
ggccccccggtcggacatcccgccggccccccggtcggacatcccgccggccccccggtc
ggacatcctggcggccctccagtcggacatcccggcggccctccagtcggacatcccagc
gggccccgagtcggacatcccggcgggctccaagtcggacctccaggtccaggtggacac
cctggaaacatccagtcgcctcttgggggtctactaggtgcccgacctggaatgatgcca
ctccagcgcccccagggtccaccgccatcacacatgcaacgtttccctccaccccaaggg
caaagaccacctcaccctaacgtgccccctggcccgccacagttgatacccagggggcca
catcctcaaatgatgcgccacgagctgccacaacctaaaggaggatttgggatgccccct
ctacataacatgagaggtcccttccctcgaggacatggcccgccccatcaaggtcctgcc
ccgtttacaagaccaggtggtcctaggagctttgaagggcaggaggaaatggatgacaga
ccgctcaggggtgacaggccaggattcagggatcgagaacaggagagggacagagactgg
gatcgagacagagacagagagagggacagagggtttggagggggaaggcgttttggtgat
ggaggcagaggagggggtagtgacaaaatggatgggcgggacaggcttggaggttggcag
gaagatgtagggaattcccgtggaggaggatgggagagagacagagaccgagatcgggac
agagatagacgggactggcgagagaggcgaggcagccttgataaagacagagatcgaggc
cgcagtgacgatggggagagggatcgaggcagagcggagggaggagaaagaagcagagga
gaaggaggcagccgggacaaaaccagagcgcctgaagtcaaagcagacaaaccgagacgg
tcggagcgacgagagaggacgtcgcggtgggataaagacgatcgactggccgaactggaa
aacatggacaaattccggagctctaacagcacggaacaacctggtgggactcctctggtt
acggtggaaaccaggaaagagccaaatggggaagccactaaaaagaaggaagagtcagaa
catttacttgccgggccgattccagctgctgaaaatgcccaatcctccgagtctaaagag
ctggctcaaaatgagtccacagcaacaaaagaagaaaaagatgcagcagcatcatag
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integrated database retrieval system
