Xiphophorus couchianus (Monterrey platyfish): 114153394
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Entry
114153394 CDS
T05908
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04140
Autophagy - animal
xco04148
Efferocytosis
xco05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
114153394 (vps11)
04148 Efferocytosis
114153394 (vps11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
114153394 (vps11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114153394 (vps11)
Membrane trafficking [BR:
xco04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
114153394 (vps11)
Hops complex
114153394 (vps11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
Clathrin
TPR_Vps41
Beta-prop_WDR3_1st
zf-C3HC4_2
Beta-prop_WDR36-Utp21_1st
zf-rbx1
zf-C3H2C3
zf-RING_2
zf-C3HC4
TPR_GEMI5
zf-RING_5
zf-ANAPC11
WD40_Prp19
Rab11-FIP3
TSGP1
Beta-prop_EML_2
Kbp-5
CC_Bre1
zf_RING_Vps8_fungal
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
114153394
NCBI-ProteinID:
XP_027887729
LinkDB
All DBs
Position
11:32209656..32217841
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AA seq
928 aa
AA seq
DB search
MAVFLQWRKFVFFDKDTVKDPADSGKTFILPKGISASDSGRGHVVLGDMEGQIWLMTRSL
QLTSFQAYKLRVTHLFQLKQHSILVSVGQDEHGINPLVKVWNLDKRDSGNPLCTRIFPAV
PGNKPAEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLTLHEGSCPVTGLAFR
QMAKVTHLFVATLEKVFCYTLSNKEYPKVELDTHGCALCCSSLADPSQDSQFIVAGDECV
YLHQPDERGPCFAFDGHKLLTHWHRGYLFLLIKDVKSPNKSGFGSGENSLSEKQVLTIYD
LDNKFIAYSASFDDVIDVLAEWGSFYILTRNGKMFVLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDSDGLSEIFRQYGDHLYLKGDHDGAIQQYIRTTGKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSSENEVHFDVEIAIKVLRQA
GYHSHAVFLAERHQHHEWYLKIQLEDLKNYQEGLRYIGRLPFEQTESNMKRYGKTLMHHV
PEGTTLLLKRLCTNYHPNENSMEKVSLDSSLLNKVWANSEEFIPIFANNPRELKAFLEHM
IEVDPRSSQGVYDTLLELRLQDWAHEQDPEKKKVCQGEALSLLRSDNTVFDKALVLCQMH
NFKEGVLYLYEKGKLYQQIMHYHMQNEEYGKVVDACKRYGDQEGCLWEQALGYFARKEED
CKAYISEVLHHIDQKNLMPPLLVVQTLAHNSTATLSVIKDYLINKLQRESQQIEDDERKI
CQYREETSHLRSEIQELKASAKIFQKTKCNMCNSPLELPSVHFLCSHSFHQHCFESYAES
DAECPTCTPENRKVMDLLRAQDQKRDLHDHFSRQLRSSNDGFSVVADYFGRGVFNKLTLI
TDPPGSKTVGSLEVNLQRDLLIHTKRNC
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcagtatttctacagtggagaaaatttgtcttctttgataaggacacggtgaaggat
cctgcagatagcggaaaaacctttattcttcctaaaggaatctcggcgagtgactccggc
cggggacatgttgttctgggagatatggaaggacagatctggctgatgacacgttccctg
cagttgacgtcgttccaggcgtacaagctgcgggtgactcacttgttccagctgaaacag
cacagtatcctggtatcagtgggacaggatgaacatggcattaatcctctggtgaaggtc
tggaaccttgacaagagagacagtgggaatccactctgcaccagaatctttcctgcagtt
cccggcaataaaccagctgaagtgtcttgtctcagtgtacacgagaacctgaacttcatg
gctataggcttcacagatggcagcgtggttttaaccaaaggggacatcaccagagaccgt
cacagtaaaactctgactctgcatgaggggagctgccccgtcacaggcctggccttccgc
caaatggcaaaagttacacatttgtttgttgccactctggaaaaagtattttgctacact
ctgtctaacaaggagtatccgaaagtagagctggatacccatggctgcgccctgtgctgc
tcgtccctggcagatccatcccaggattcccagtttattgtggctggggatgaatgtgtt
tacctgcaccagcctgatgaacgagggccctgctttgctttcgatggccacaagctgttg
acccattggcaccggggatacttgttcctgctgatcaaagatgtgaagtctcccaacaaa
tcagggtttggcagcggcgagaactcgctgtcagaaaagcaagttttaacaatctatgac
ctggacaacaaattcatcgcctacagcgcctcattcgatgatgtcattgatgtgttggca
gaatggggatccttctacattctgacccgaaacgggaaaatgtttgttctgcaagagaag
gacacgcagacaaaactggagatgctgttcaagaagaacttgtttgtcatggccataaac
ttggctaaaagccagcatctggacagtgacggtctgtcagagatctttcgacagtatggc
gatcatctgtacctgaagggagatcatgatggtgccatccagcagtatattcgcaccact
gggaagctggagccttcgtatgtcattaggaaattcctggatgcccaaaggatccacaac
ctgacggcatacctgcaggcccttcaccgccagtctctggccaatgcggaccacactaca
ctgctcctcaactgctatactaaactcaaagacagctccaagctggaagagttcatcaag
agcagcgagaatgaggtccactttgatgttgagattgccatcaaggttcttcgccaagct
ggataccacagtcatgctgtgttcctggctgaacgccaccagcatcatgagtggtacctg
aagatccagctggaggacctgaagaactatcaggaaggcttgcggtacattggccgtctg
ccttttgaacaaactgaaagcaacatgaagcgctatggcaagacgctcatgcaccatgtt
cctgaaggcaccacattgctcctgaagcgcttatgcaccaactatcatccgaatgaaaac
tctatggaaaaagtcagcctagacagtagtctgcttaacaaggtctgggcaaattctgaa
gaattcatcccaatttttgccaataaccctcgtgagctgaaagccttcctggagcatatg
attgaggtggaccctcgttcatcccagggtgtgtacgacacactgctggagctccgactg
caagactgggcacacgaacaagatcctgagaaaaaaaaggtttgccagggagaagccctt
tcgctgctcagaagtgacaacactgtgtttgataaggccttggtcctttgccagatgcac
aactttaaagaaggtgtcctctacctgtatgagaaaggcaaactttaccagcaaatcatg
cattaccacatgcagaatgaggagtatggtaaagttgtagatgcctgcaaacgatatgga
gaccaggagggctgcctttgggagcaagctctcggatactttgccagaaaagaggaggac
tgtaaggcctatatcagtgaggtcctacatcacattgaccagaagaacctcatgcctcca
ttacttgtcgtgcagacactggcacacaactcaacggccactctgtcggttatcaaagac
tacctcatcaataagctgcagcgagagagccagcagatagaagatgacgagcgtaaaatt
tgccagtaccgtgaggaaacgtctcatctccgctctgaaatccaggagctgaaggcaagt
gccaagatattccagaagactaagtgcaacatgtgtaacagccccttggagcttccatct
gtacacttcctgtgtagccactcctttcaccaacactgctttgaaagttatgcagagagc
gatgcagagtgtccaacatgcactccagaaaaccgcaaagtcatggatctgctgcgcgct
caagaccagaaacgggatctccatgaccatttcagtcgacagctccgaagctccaatgat
ggtttctcggtggtggctgattattttggtcgaggagtgtttaacaaactgacgctgatc
actgaccctccagggagcaaaactgttggaagtctagaagtcaacctgcagcgagacctg
ctaatccacaccaagagaaactgctag
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