Xiphophorus couchianus (Monterrey platyfish): 114153478
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Entry
114153478 CDS
T05908
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03440
Homologous recombination
xco03450
Non-homologous end-joining
xco04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114153478 (rad50)
03450 Non-homologous end-joining
114153478 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xco03032
]
114153478 (rad50)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114153478 (rad50)
DNA replication proteins [BR:
xco03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
114153478 (rad50)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
114153478 (rad50)
BRCA1-C complex
114153478 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
114153478 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
ABC_tran
zf-met
AAA_29
AAA_13
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
114153478
NCBI-ProteinID:
XP_027887856
LinkDB
All DBs
Position
11:2777921..2802674
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQIISFFTPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFSDVNGEKVTIQRSMSCTQKAKNYSFKSLEQVITR
IKDGEKVSLSSKCGELDREMISALGVSKPVLNHVIFCHQEDSNWPLSEGKALKDKFDSIF
AATKYIKALETMRQLRLKQSQTVKECQVELRYLKQNKEKAQQLRETVATKEAQLMASKDS
VQQTESHIEPLENRLMEFDQKLGKVMKLDNDIKALDSRKKQMEEDNKELEETMEQVFQGS
DEELQDIYQNHQRTVKEKERRLTDCQKELERAGWECQRLNRVKADLLVEQGRLQLEADRH
TQNVKSRDTLVRSLSSHLEMEGYDRPPFTSLQLESFHRHVTQRLEQEKETLSQIIAGLQE
KEQQKQQSIDEMRDKKTGLERTVELKRDMQGKKQQELRNIRADLQKLEGSSNRLQELENE
LAKNERELERAVQSSNVEELKTEIEELQREKTELDQAQRRLDQEMQILNTHTTARTQMDM
LKKDKTEKEEQVRKTKARHGEDLMLLLGHFPNKRELEDWIYSKSKEINSTRDKLAKLNKD
LASSEQNKSHIAAELRKKEQQLSSDEEKFFSVCGSQDLEQDLGRLQEDLEKVSKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSESDLQEVISDMQSKLRLVPDKLKNTEQDLK
RKERKKDEMMALKPVRQAIVQSQEKELPELRNRLQTVNREIERLKAEVEEQETLLGTLMS
EEETAKACLQDISLMDRYLMDLKELDRKIAQQAAKLQGVDLTRNIQQVSQEKQETQHKLD
ITSSKMELKRKLIQDQQDQIQILKSAVNETRAEKLQLSSDMQKQQQLEEQCIDFTAEIQA
LTRDIREAKEQLSPLSAALEKLQQEKQELMEHKRKKQEEGQEKINGIKERVKSVSSLERD
IKKYMDDGREEYKEQKESELQETNTQLHEAEKQKEKINKEMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVVAKRETLMKEMGNMQVLQLRQERRDAERKLEELKKNRSIALGRQKG
FEEEILHYRKELREDQYDKAEERYKNKMITMRTTELVIKDLDLYYKALDQTIMRFHSMKM
DEINKIIRDLWRNTYRGQDIEYVEIRSDVDENSSAGVKRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIENFYRIRKNQDQNSEINKCSISSLSSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagatagacaaaatgagcatcctcggagtgaggagctttgggattgaggataaa
gacaaacaaatcatttctttttttactcctttgactgttctggtgggacccaacggagca
gggaaaacgactattattgaatgcctcaagtatgcaacatcgggggaacttccccctgga
tctaaaggaggagcttttgttcatgatccaaaggatgcccatgagacggatgtacgagct
cagattcgactcttgttctcagatgtgaatggagagaaagtcaccatccagcgctccatg
tcctgcacacagaaagcaaagaactattcattcaaaagcttagagcaggtcattactaga
ataaaagatggtgaaaaagtaagcctttcttctaagtgtggtgagctggatcgggagatg
atttctgctttaggagtctccaagccggtgctgaatcatgtcatcttttgtcaccaagaa
gattccaactggccacttagtgagggcaaagcactcaaagacaaatttgactccatcttt
gctgcaaccaaatatattaaggcactggagacaatgcgtcagctgcgtctcaaacagagt
cagacagtcaaagaatgccaagtggagttacgctatctgaagcaaaacaaggagaaggct
cagcagctcagagagactgtggccaccaaggaggctcagctgatggcctccaaagacagt
gtccaacagacggagagccatattgagccgcttgagaatcgactgatggagttcgaccag
aaactggggaaggtaatgaagttggacaatgacattaaggctttggacagcaggaagaaa
cagatggaggaggacaacaaagaactggaggaaaccatggaacaggtgtttcagggttca
gatgaggagctacaagacatttaccagaaccaccagaggacagtgaaggagaaggagcgc
aggttgacagactgccagaaagagctggagagagccggttgggaatgtcagagactcaac
agagtgaaggccgatctcttggtcgagcaaggtcgtcttcagctggaagctgatcgtcat
actcagaatgtcaagagccgtgacactctggttcgctctttgtcatcccatctggagatg
gagggttacgaccgcccccccttcacctctctgcagcttgaaagctttcatcgtcacgtc
actcaaagactggagcaggagaaagagacactcagtcagattatagcaggtctgcaggaa
aaggagcaacagaagcagcagtctatcgatgaaatgagggataagaagactggcctggag
agaaccgtagagctgaagagggacatgcagggaaagaagcagcaggaactgaggaacatc
agggcggatctgcagaaactcgaagggtcatccaatcgactgcaagagctggaaaatgaa
ttggccaaaaatgagcgtgagctggaacgtgccgttcagagctccaatgtcgaagagctg
aagactgagattgaggaactccagagagaaaagactgagcttgaccaggcgcagagacgg
ctcgatcaagagatgcaaattcttaacacgcacacaactgcacgcacgcagatggacatg
ttgaagaaagataaaacagagaaagaggagcaggtacggaaaaccaaggctcgtcacggc
gaggatctcatgctcctcctgggtcattttcccaacaagagagaactggaagactggatc
tattccaagtccaaggaaatcaatagcacaagggacaaacttgccaaattaaataaggac
ttggcatcaagtgagcagaacaaaagccatattgctgctgagttgcggaagaaggaacaa
caactaagcagcgatgaagagaagttcttcagcgtgtgtggcagtcaggatctggagcag
gatttgggcagactgcaagaagatctggagaaagtatccaaacaaagagccatgttagca
ggagccacagcagtgtacactcagttcatcagccagctgacagaggagagggagccctgc
tgtcctgtgtgccagcggacctttccttcagaatctgacctgcaggaagttatcagcgac
atgcagtccaagctacgcctggtgcctgacaaactgaagaacacagagcaggacctgaag
aggaaggagaggaagaaggatgaaatgatggcactcaaacctgtgagacaggccattgta
cagtctcaggagaaggagttgcctgagctgagaaaccgacttcagactgtgaacagagaa
atcgagaggctcaaggcagaagtagaagaacaggaaacgctgcttggtaccttaatgtct
gaggaggaaacagccaaggcctgtctacaagacatctctctgatggacagatacttgatg
gaccttaaagagctggacagaaaaattgctcagcaggcagctaaactccagggagtagac
ctgactagaaacattcagcaagttagtcaggagaaacaagaaacccagcacaagctggac
atcacctctagcaaaatggagctgaaacgtaagctgattcaagaccaacaggaccagatt
cagatcctgaaaagtgccgtaaatgaaacaagagcagagaagctgcagctaagcagcgac
atgcagaaacagcagcagctggaggagcaatgtattgactttactgcagagattcaggct
ttaaccagagacattagggaagcaaaggaacaactgtcacctctgtctgctgctttggaa
aagctgcaacaagagaaacaagagttaatggagcataaaagaaagaaacaggaagaaggc
caagagaagatcaatggcattaaagagagggtaaagtctgtctccagtttggaacgagat
attaaaaaatacatggatgatggaagagaggaatataaagagcaaaaggaatctgagctt
caagaaaccaacactcagctccatgaggctgagaagcagaaagaaaagattaataaggag
atgggaaacatccgtcaggacatagatacccaaaaggtccaagagcgctggttacaagac
aatctgacattaaggaaacgagttgaggaactgaaggaggttgtagctaaacgagaaact
cttatgaaagagatgggcaacatgcaggtgttgcagctgcgccaagaacgtcgtgatgca
gaacgcaagttagaagagttgaagaagaaccggagcatcgcactcggtcggcagaaaggc
tttgaagaagagattctgcattacagaaaagagttgagagaagatcagtatgacaaagct
gaggagcgctacaaaaacaagatgatcaccatgaggaccacggagttggtcattaaagac
cttgatctctactacaaagcccttgatcaaaccatcatgagattccacagtatgaagatg
gatgagatcaataaaattattagagacctgtggcgcaacacctacaggggtcaagatatt
gagtatgtggagatcaggtcggatgtggatgagaattcatcagctggagtcaagaggagg
gtttacaactacagagtagttatggtgaaaggagacacagctctggatatgagaggacgc
tgcagtgctggccagaaggtgttggcgtccctgatcatccgtcttgccctggcagagact
ttctgtctgaactgtgggatcttggccttggatgagcccaccaccaacctggacagagag
aacatcgagtccttagcacatgcccttgtagaaatcatcaagagtcgttctcgtcagcgc
aatttccagctgctcatcatcacccacgatgaagactttgtagagctcctgggccgctct
agctacatcgagaacttctaccgaatccgcaagaaccaggaccagaactccgaaatcaac
aagtgcagcatctcctctctctcgtcttatctccattaa
DBGET
integrated database retrieval system
